Wall clock time and date at job start Mon Mar 30 2020 04:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 120.00447 * 2 1 4 4 N 1.34776 * 119.99659 * 179.97438 * 2 1 3 5 5 C 1.47750 * 125.82502 * 355.00123 * 4 2 1 6 6 C 1.54901 * 104.84195 * 204.24974 * 5 4 2 7 7 C 1.55154 * 101.58530 * 322.90580 * 6 5 4 8 8 C 1.47022 * 125.64875 * 175.00481 * 4 2 1 9 9 H 1.09002 * 109.88203 * 59.32063 * 8 4 2 10 10 C 1.53002 * 109.87949 * 298.31266 * 8 4 2 11 11 N 1.46907 * 109.47000 * 175.51337 * 10 8 4 12 12 C 1.46899 * 111.00246 * 293.76458 * 11 10 8 13 13 C 1.46897 * 110.99848 * 169.80647 * 11 10 8 14 14 C 1.50699 * 109.47130 * 190.00333 * 13 11 10 15 15 H 1.07999 * 119.99865 * 359.97438 * 14 13 11 16 16 C 1.37887 * 120.00046 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99499 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99738 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47042 * 89.99966 * 18 16 14 20 20 H 1.48499 * 109.47096 * 209.99357 * 18 16 14 21 21 H 1.48494 * 109.47428 * 329.99808 * 18 16 14 22 22 H 1.09004 * 109.47071 * 240.00716 * 1 2 3 23 23 H 1.09007 * 109.46946 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47557 * 120.00108 * 1 2 3 25 25 H 1.08997 * 110.42940 * 85.36959 * 5 4 2 26 26 H 1.08996 * 110.38260 * 323.10267 * 5 4 2 27 27 H 1.09000 * 111.00551 * 204.83554 * 6 5 4 28 28 H 1.09002 * 111.03742 * 80.99537 * 6 5 4 29 29 H 1.08999 * 110.72357 * 277.14321 * 7 6 5 30 30 H 1.09003 * 110.87695 * 153.93409 * 7 6 5 31 31 H 1.08997 * 109.47406 * 55.51790 * 10 8 4 32 32 H 1.08996 * 109.47517 * 295.51539 * 10 8 4 33 33 H 1.08997 * 109.46571 * 292.42828 * 12 11 10 34 34 H 1.08996 * 109.46949 * 52.42465 * 12 11 10 35 35 H 1.08994 * 109.46821 * 172.43062 * 12 11 10 36 36 H 1.09003 * 109.47090 * 70.00362 * 13 11 10 37 37 H 1.09004 * 109.47622 * 310.00159 * 13 11 10 38 38 H 0.97006 * 119.99239 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5796 -2.5128 0.1055 6 6 2.7074 -3.4078 0.6770 7 6 3.9582 -2.8227 -0.0305 8 6 3.6400 -1.3143 -0.1034 9 1 4.1248 -0.7928 0.7218 10 6 4.1267 -0.7438 -1.4370 11 7 5.5940 -0.7972 -1.4862 12 6 6.1873 0.1027 -0.4881 13 6 6.0872 -0.4865 -2.8345 14 6 7.5617 -0.7878 -2.9118 15 1 8.0806 -1.1713 -2.0458 16 6 8.2486 -0.5728 -4.0880 17 7 7.6167 -0.1053 -5.1423 18 14 10.0765 -0.9455 -4.1835 19 1 10.2728 -2.3525 -4.6162 20 1 10.7173 -0.0324 -5.1636 21 1 10.6925 -0.7482 -2.8468 22 1 -0.3633 -0.5137 0.8901 23 1 -0.3633 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 1.2729 -2.8702 -0.8775 26 1 0.7276 -2.4959 0.7851 27 1 2.5553 -4.4514 0.4016 28 1 2.7834 -3.2984 1.7588 29 1 4.0675 -3.2425 -1.0304 30 1 4.8568 -2.9990 0.5607 31 1 3.7975 0.2910 -1.5313 32 1 3.7140 -1.3324 -2.2564 33 1 5.9796 1.1369 -0.7626 34 1 5.7571 -0.1067 0.4912 35 1 7.2653 -0.0544 -0.4527 36 1 5.9203 0.5693 -3.0481 37 1 5.5535 -1.0938 -3.5656 38 1 8.1000 0.0463 -5.9696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:46 Heat of formation + Delta-G solvation = -32.713224 kcal Electronic energy + Delta-G solvation = -17811.811028 eV Core-core repulsion = 15075.171218 eV Total energy + Delta-G solvation = -2736.639810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06816 -37.52487 -36.04498 -32.60716 -31.86869 -30.29841 -28.91631 -27.01300 -26.00468 -23.93099 -22.44412 -21.12572 -20.02904 -18.72191 -16.98979 -16.50581 -16.08947 -15.17085 -14.66620 -14.54432 -14.16333 -13.96615 -13.45945 -13.30887 -12.87509 -12.59839 -12.52154 -12.29080 -12.04683 -11.86593 -11.36055 -11.18047 -11.01708 -10.86467 -10.73633 -10.55711 -10.42268 -10.31815 -9.86567 -9.69211 -9.20588 -8.49362 -8.39163 -7.16760 -5.98375 -3.99555 2.71052 3.05352 3.34727 3.40343 3.44341 4.45509 4.49428 4.56122 4.89896 4.96302 5.11178 5.18140 5.26043 5.30057 5.36219 5.39197 5.52679 5.71459 5.72192 5.81819 5.95308 6.10863 6.18865 6.22027 6.32531 6.50626 6.56005 6.65993 6.83556 7.33904 7.42567 7.62171 7.84350 8.12376 8.24664 8.27224 8.59924 9.08161 9.64275 11.12727 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.005427 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.614791 B = 5158.035745 C = 5495.012357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.521 3.479 3 O -0.541 6.541 4 N -0.618 5.618 5 C 0.101 3.899 6 C -0.137 4.137 7 C -0.110 4.110 8 C 0.138 3.862 9 H 0.075 0.925 10 C 0.047 3.953 11 N -0.535 5.535 12 C 0.038 3.962 13 C 0.194 3.806 14 C -0.505 4.505 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.900 5.900 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.014 0.986 34 H 0.043 0.957 35 H 0.071 0.929 36 H -0.010 1.010 37 H 0.028 0.972 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.018 -6.394 11.438 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.310 3.690 3 O -0.418 6.418 4 N -0.354 5.354 5 C -0.022 4.022 6 C -0.175 4.175 7 C -0.148 4.148 8 C 0.035 3.965 9 H 0.093 0.907 10 C -0.082 4.082 11 N -0.260 5.260 12 C -0.111 4.111 13 C 0.069 3.931 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.727 3.273 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.102 0.898 23 H 0.108 0.892 24 H 0.105 0.895 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.008 0.992 37 H 0.046 0.954 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.570 -6.161 11.356 18.737 hybrid contribution 0.657 0.638 -0.485 1.037 sum -12.913 -5.523 10.871 17.760 Atomic orbital electron populations 1.21900 0.91881 1.05151 1.03867 1.20442 0.90189 0.82271 0.76057 1.90748 1.70737 1.30681 1.49677 1.48755 1.08016 1.05771 1.72812 1.22365 0.96597 0.82408 1.00842 1.22827 0.95166 0.99109 1.00428 1.22542 0.97294 0.92863 1.02144 1.21660 0.79092 0.96982 0.98773 0.90735 1.22309 0.90953 0.99398 0.95553 1.62105 1.02867 1.52300 1.08720 1.22228 1.00745 0.93872 0.94227 1.19729 0.95743 0.94612 0.83053 1.21160 0.93313 1.42526 0.97322 0.91835 1.25002 0.98588 0.95443 0.95685 1.69972 1.36195 1.45730 1.02044 0.86489 0.85015 0.78053 0.77787 1.20661 1.21369 1.19868 0.89799 0.89165 0.89540 0.91254 0.90903 0.89923 0.90948 0.89845 0.89824 0.94742 0.91650 0.96774 0.93783 0.91028 0.99176 0.95414 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 9.42 36.01 0.34 -1.23 16 2 C 0.52 7.68 7.69 -10.99 -0.08 7.59 16 3 O -0.54 -10.66 16.27 5.55 0.09 -10.57 16 4 N -0.62 -8.42 3.07 -162.76 -0.50 -8.92 16 5 C 0.10 0.94 6.67 -2.35 -0.02 0.93 16 6 C -0.14 -1.26 7.08 -24.59 -0.17 -1.44 16 7 C -0.11 -1.44 6.27 -24.90 -0.16 -1.60 16 8 C 0.14 2.19 2.81 -66.95 -0.19 2.00 16 9 H 0.07 1.28 6.22 -51.93 -0.32 0.96 16 10 C 0.05 0.94 4.35 -3.82 -0.02 0.93 16 11 N -0.54 -12.08 4.54 -244.37 -1.11 -13.19 16 12 C 0.04 0.80 9.19 60.06 0.55 1.36 16 13 C 0.19 5.28 4.72 -4.98 -0.02 5.26 16 14 C -0.50 -14.51 8.56 -34.44 -0.29 -14.80 16 15 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 18 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.08 0.57 7.78 -51.93 -0.40 0.17 16 23 H 0.09 0.84 8.12 -51.92 -0.42 0.41 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.50 7.53 -51.93 -0.39 0.11 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.19 7.78 -51.93 -0.40 0.78 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.78 6.88 -51.93 -0.36 0.42 16 32 H 0.07 1.30 7.82 -51.93 -0.41 0.90 16 33 H 0.01 0.31 8.10 -51.93 -0.42 -0.11 16 34 H 0.04 0.81 6.09 -51.93 -0.32 0.49 16 35 H 0.07 1.56 6.96 -51.93 -0.36 1.19 16 36 H -0.01 -0.29 8.09 -51.93 -0.42 -0.71 16 37 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 305.66 15.07 4.61 4.61 Total: -1.00 -33.73 305.66 -7.61 -41.34 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -6.26 Total: -4.03 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.16 Total: 0.47 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.87 Total: -48.80 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.73 -7.61 -41.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.632 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds