Wall clock time and date at job start Mon Mar 30 2020 04:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 120.00447 * 2 1 4 4 N 1.34776 * 119.99659 * 179.97438 * 2 1 3 5 5 C 1.47750 * 125.82502 * 355.00123 * 4 2 1 6 6 C 1.54901 * 104.84195 * 204.24974 * 5 4 2 7 7 C 1.55154 * 101.58530 * 322.90580 * 6 5 4 8 8 C 1.47022 * 125.64875 * 175.00481 * 4 2 1 9 9 H 1.09002 * 109.88203 * 59.32063 * 8 4 2 10 10 C 1.53002 * 109.87949 * 298.31266 * 8 4 2 11 11 N 1.46907 * 109.47000 * 175.51337 * 10 8 4 12 12 C 1.46899 * 111.00246 * 293.76458 * 11 10 8 13 13 C 1.46897 * 110.99848 * 169.80647 * 11 10 8 14 14 C 1.50699 * 109.47130 * 190.00333 * 13 11 10 15 15 H 1.07999 * 119.99865 * 359.97438 * 14 13 11 16 16 C 1.37887 * 120.00046 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99499 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99738 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47042 * 89.99966 * 18 16 14 20 20 H 1.48499 * 109.47096 * 209.99357 * 18 16 14 21 21 H 1.48494 * 109.47428 * 329.99808 * 18 16 14 22 22 H 1.09004 * 109.47071 * 240.00716 * 1 2 3 23 23 H 1.09007 * 109.46946 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47557 * 120.00108 * 1 2 3 25 25 H 1.08997 * 110.42940 * 85.36959 * 5 4 2 26 26 H 1.08996 * 110.38260 * 323.10267 * 5 4 2 27 27 H 1.09000 * 111.00551 * 204.83554 * 6 5 4 28 28 H 1.09002 * 111.03742 * 80.99537 * 6 5 4 29 29 H 1.08999 * 110.72357 * 277.14321 * 7 6 5 30 30 H 1.09003 * 110.87695 * 153.93409 * 7 6 5 31 31 H 1.08997 * 109.47406 * 55.51790 * 10 8 4 32 32 H 1.08996 * 109.47517 * 295.51539 * 10 8 4 33 33 H 1.08997 * 109.46571 * 292.42828 * 12 11 10 34 34 H 1.08996 * 109.46949 * 52.42465 * 12 11 10 35 35 H 1.08994 * 109.46821 * 172.43062 * 12 11 10 36 36 H 1.09003 * 109.47090 * 70.00362 * 13 11 10 37 37 H 1.09004 * 109.47622 * 310.00159 * 13 11 10 38 38 H 0.97006 * 119.99239 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5796 -2.5128 0.1055 6 6 2.7074 -3.4078 0.6770 7 6 3.9582 -2.8227 -0.0305 8 6 3.6400 -1.3143 -0.1034 9 1 4.1248 -0.7928 0.7218 10 6 4.1267 -0.7438 -1.4370 11 7 5.5940 -0.7972 -1.4862 12 6 6.1873 0.1027 -0.4881 13 6 6.0872 -0.4865 -2.8345 14 6 7.5617 -0.7878 -2.9118 15 1 8.0806 -1.1713 -2.0458 16 6 8.2486 -0.5728 -4.0880 17 7 7.6167 -0.1053 -5.1423 18 14 10.0765 -0.9455 -4.1835 19 1 10.2728 -2.3525 -4.6162 20 1 10.7173 -0.0324 -5.1636 21 1 10.6925 -0.7482 -2.8468 22 1 -0.3633 -0.5137 0.8901 23 1 -0.3633 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 1.2729 -2.8702 -0.8775 26 1 0.7276 -2.4959 0.7851 27 1 2.5553 -4.4514 0.4016 28 1 2.7834 -3.2984 1.7588 29 1 4.0675 -3.2425 -1.0304 30 1 4.8568 -2.9990 0.5607 31 1 3.7975 0.2910 -1.5313 32 1 3.7140 -1.3324 -2.2564 33 1 5.9796 1.1369 -0.7626 34 1 5.7571 -0.1067 0.4912 35 1 7.2653 -0.0544 -0.4527 36 1 5.9203 0.5693 -3.0481 37 1 5.5535 -1.0938 -3.5656 38 1 8.1000 0.0463 -5.9696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:46 Heat of formation + Delta-G solvation = -57.098835 kcal Electronic energy + Delta-G solvation = -17812.868467 eV Core-core repulsion = 15075.171218 eV Total energy + Delta-G solvation = -2737.697249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22232 -38.89469 -37.67260 -34.75357 -32.98073 -31.55257 -29.96344 -29.00711 -27.60145 -25.54382 -23.78972 -22.50049 -21.54205 -19.91066 -18.57302 -18.12553 -17.32888 -16.74031 -16.21858 -16.15224 -15.68388 -15.45095 -14.97459 -14.55222 -14.16953 -13.89416 -13.72438 -13.42251 -13.35724 -13.22689 -13.03425 -12.79372 -12.58967 -12.53977 -12.34012 -11.99331 -11.94923 -11.83497 -11.51382 -11.29884 -10.94287 -10.63989 -9.69239 -9.13819 -8.22831 -6.34134 1.40638 1.43216 1.54355 1.59916 2.01410 2.39812 3.09511 3.28834 3.57002 3.70081 3.89153 4.00274 4.24919 4.29140 4.38604 4.47033 4.49871 4.61448 4.63009 4.66101 4.72875 4.87685 4.96094 5.03047 5.06841 5.09284 5.11099 5.19027 5.21800 5.38735 5.47794 5.61874 5.97698 6.20452 6.49288 6.59995 6.81301 7.15741 7.35851 8.89222 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.005427 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.614791 B = 5158.035745 C = 5495.012357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.507 3.493 3 O -0.606 6.606 4 N -0.619 5.619 5 C 0.095 3.905 6 C -0.123 4.123 7 C -0.109 4.109 8 C 0.142 3.858 9 H 0.059 0.941 10 C 0.055 3.945 11 N -0.529 5.529 12 C 0.044 3.956 13 C 0.208 3.792 14 C -0.523 4.523 15 H 0.069 0.931 16 C -0.002 4.002 17 N -0.938 5.938 18 Si 0.977 3.023 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.262 1.262 22 H 0.119 0.881 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.000 1.000 32 H 0.059 0.941 33 H -0.007 1.007 34 H 0.075 0.925 35 H 0.067 0.933 36 H -0.050 1.050 37 H 0.004 0.996 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.700 -8.697 13.004 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.299 3.701 3 O -0.488 6.488 4 N -0.353 5.353 5 C -0.026 4.026 6 C -0.161 4.161 7 C -0.148 4.148 8 C 0.038 3.962 9 H 0.077 0.923 10 C -0.074 4.074 11 N -0.253 5.253 12 C -0.104 4.104 13 C 0.082 3.918 14 C -0.561 4.561 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.579 5.579 18 Si 0.800 3.200 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.187 1.187 22 H 0.137 0.863 23 H 0.105 0.895 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.012 0.988 34 H 0.093 0.907 35 H 0.086 0.914 36 H -0.033 1.033 37 H 0.022 0.978 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.292 -8.515 12.948 21.081 hybrid contribution 0.808 1.370 -0.986 1.871 sum -13.484 -7.145 11.962 19.389 Atomic orbital electron populations 1.21908 0.87174 1.05946 1.06481 1.21570 0.92437 0.81515 0.74577 1.90719 1.72398 1.33040 1.52617 1.48933 1.07025 1.07554 1.71781 1.22727 0.97592 0.79668 1.02590 1.22839 0.92297 1.00264 1.00666 1.22490 0.99571 0.90649 1.02054 1.21471 0.81053 0.98625 0.95050 0.92267 1.22312 0.89113 0.97624 0.98375 1.62060 1.04624 1.52075 1.06543 1.22209 1.00643 0.92421 0.95153 1.19411 0.95742 0.91536 0.85108 1.21441 0.93864 1.42921 0.97842 0.91308 1.26018 1.04113 0.94775 0.95025 1.70117 1.38522 1.46464 1.02781 0.85274 0.78161 0.78261 0.78258 1.19381 1.20918 1.18652 0.86286 0.89462 0.87383 0.90163 0.87109 0.87213 0.89704 0.91268 0.89886 0.98146 0.92251 0.98787 0.90668 0.91396 1.03250 0.97798 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.42 71.24 0.67 -1.81 16 2 C 0.51 14.67 7.69 87.66 0.67 15.35 16 3 O -0.61 -24.88 16.27 -3.04 -0.05 -24.93 16 4 N -0.62 -16.05 3.07 -787.24 -2.42 -18.47 16 5 C 0.10 1.41 6.67 86.79 0.58 1.99 16 6 C -0.12 -1.79 7.08 31.98 0.23 -1.56 16 7 C -0.11 -2.70 6.27 31.78 0.20 -2.50 16 8 C 0.14 4.51 2.81 45.34 0.13 4.64 16 9 H 0.06 2.05 6.22 -2.39 -0.01 2.04 16 10 C 0.06 2.31 4.35 86.30 0.38 2.69 16 11 N -0.53 -24.92 4.54 -927.06 -4.21 -29.12 16 12 C 0.04 1.94 9.19 127.69 1.17 3.11 16 13 C 0.21 12.01 4.72 85.56 0.40 12.41 16 14 C -0.52 -30.76 8.56 25.60 0.22 -30.54 16 15 H 0.07 3.90 7.10 -2.91 -0.02 3.88 16 16 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 17 N -0.94 -58.65 13.29 21.45 0.28 -58.36 16 18 Si 0.98 45.18 29.54 68.60 2.03 47.21 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H 0.12 1.08 7.78 -2.38 -0.02 1.06 16 23 H 0.09 1.47 8.12 -2.38 -0.02 1.45 16 24 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.11 0.89 7.53 -2.39 -0.02 0.87 16 27 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.91 7.78 -2.39 -0.02 1.89 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.00 0.01 6.88 -2.39 -0.02 0.00 16 32 H 0.06 2.50 7.82 -2.39 -0.02 2.48 16 33 H -0.01 -0.31 8.10 -2.39 -0.02 -0.33 16 34 H 0.07 2.81 6.09 -2.39 -0.01 2.80 16 35 H 0.07 3.00 6.96 -2.39 -0.02 2.99 16 36 H -0.05 -3.23 8.09 -2.39 -0.02 -3.25 16 37 H 0.00 0.24 7.93 -2.38 -0.02 0.22 16 38 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -78.22 305.66 1.77 -76.46 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.02 Total: 3.09 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.11 Total: 4.14 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -6.34 Total: -105.96 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -78.22 1.77 -76.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.357 kcal (2) G-P(sol) polarization free energy of solvation -78.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds