Wall clock time and date at job start Mon Mar 30 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47573 * 2 1 4 4 C 1.50700 * 109.46916 * 239.99311 * 2 1 3 5 5 H 1.07999 * 120.00230 * 239.99655 * 4 2 1 6 6 C 1.37885 * 119.99844 * 60.00751 * 4 2 1 7 7 N 1.31512 * 119.99950 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47272 * 59.99561 * 8 6 4 10 10 H 1.48503 * 109.46982 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47075 * 299.99459 * 8 6 4 12 12 N 1.46498 * 109.46877 * 119.99996 * 2 1 3 13 13 C 1.34779 * 120.00066 * 274.99746 * 12 2 1 14 14 O 1.21287 * 119.99458 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00253 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.46914 * 179.97438 * 15 13 12 17 17 H 1.08999 * 110.28569 * 52.87187 * 16 15 13 18 18 C 1.54259 * 110.32130 * 174.99653 * 16 15 13 19 19 C 1.54381 * 105.06078 * 118.89688 * 18 16 15 20 20 N 1.48568 * 104.59175 * 23.85345 * 19 18 16 21 21 C 1.46897 * 110.99712 * 200.96296 * 20 19 18 22 22 C 1.48561 * 104.22108 * 320.51487 * 20 19 18 23 23 H 1.09006 * 109.46607 * 60.00018 * 1 2 3 24 24 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47257 * 300.00728 * 1 2 3 26 26 H 0.96996 * 120.00029 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00310 * 94.99969 * 12 2 1 28 28 H 1.08995 * 109.47549 * 60.00132 * 15 13 12 29 29 H 1.09000 * 109.46862 * 299.99812 * 15 13 12 30 30 H 1.08994 * 110.32531 * 237.79128 * 18 16 15 31 31 H 1.09006 * 110.32511 * 0.02562 * 18 16 15 32 32 H 1.08992 * 110.41606 * 142.63342 * 19 18 16 33 33 H 1.09007 * 110.41085 * 264.96035 * 19 18 16 34 34 H 1.08998 * 109.47444 * 60.12683 * 21 20 19 35 35 H 1.09001 * 109.47072 * 180.12939 * 21 20 19 36 36 H 1.09006 * 109.47075 * 300.12409 * 21 20 19 37 37 H 1.08998 * 110.41386 * 280.70938 * 22 20 19 38 38 H 1.09004 * 110.40913 * 158.26170 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4828 7 7 0.9429 0.8295 -2.6035 8 14 2.3225 -1.1199 -4.0079 9 1 1.8280 -2.5201 -4.0080 10 1 1.8269 -0.4202 -5.2204 11 1 3.8074 -1.1193 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1585 2.4116 15 6 2.6498 -0.7285 3.5875 16 6 2.7018 0.2549 4.7586 17 1 1.7381 0.7497 4.8796 18 6 3.0942 -0.4790 6.0574 19 6 4.4144 0.1819 6.5085 20 7 4.3899 1.5304 5.8852 21 6 5.7440 2.0926 5.7938 22 6 3.8179 1.2976 4.5341 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 0.7089 1.1611 -3.4845 27 1 2.2490 -1.6318 1.1527 28 1 3.6491 -1.1203 3.3980 29 1 1.9776 -1.5507 3.8326 30 1 2.3241 -0.3430 6.8166 31 1 3.2502 -1.5397 5.8606 32 1 4.4459 0.2658 7.5947 33 1 5.2689 -0.3904 6.1472 34 1 6.3684 1.4393 5.1845 35 1 5.6969 3.0807 5.3361 36 1 6.1713 2.1752 6.7932 37 1 4.5790 0.9010 3.8621 38 1 3.4002 2.2214 4.1338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260049097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:58 Heat of formation + Delta-G solvation = -46.572438 kcal Electronic energy + Delta-G solvation = -17486.573045 eV Core-core repulsion = 14749.332255 eV Total energy + Delta-G solvation = -2737.240791 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.54728 -38.17120 -34.81151 -33.19786 -32.33208 -30.00895 -28.82170 -26.96961 -25.25529 -24.81301 -21.36251 -21.12822 -19.85610 -19.29289 -17.21291 -16.09277 -15.53935 -15.31341 -14.99920 -14.95926 -14.12075 -14.07133 -13.46857 -12.96744 -12.86568 -12.43764 -12.12921 -12.01576 -11.66609 -11.46427 -11.36373 -11.17988 -10.99186 -10.95059 -10.71013 -10.67917 -10.39670 -10.30130 -10.22482 -9.04463 -8.91982 -8.53603 -8.51230 -7.86780 -6.11485 -4.20928 3.25285 3.30636 3.31671 3.46186 4.00963 4.15596 4.38871 4.67512 4.76304 4.97670 5.19573 5.20803 5.30169 5.39279 5.43283 5.51883 5.68692 5.72675 5.75541 5.79495 5.85632 6.00162 6.00631 6.30492 6.48466 6.83157 6.85036 6.98832 7.00472 7.17378 7.49811 7.58530 7.71108 7.93486 8.16813 8.70676 8.79901 9.18159 9.46991 10.94408 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040612 B = 0.004714 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.290715 B = 5938.187115 C = 6087.710627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.712 5.712 13 C 0.498 3.502 14 O -0.553 6.553 15 C -0.137 4.137 16 C -0.073 4.073 17 H 0.088 0.912 18 C -0.122 4.122 19 C 0.030 3.970 20 N -0.520 5.520 21 C 0.014 3.986 22 C 0.044 3.956 23 H 0.089 0.911 24 H 0.025 0.975 25 H 0.014 0.986 26 H 0.265 0.735 27 H 0.387 0.613 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.075 -4.069 14.538 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.360 5.360 13 C 0.283 3.717 14 O -0.432 6.432 15 C -0.177 4.177 16 C -0.093 4.093 17 H 0.107 0.893 18 C -0.160 4.160 19 C -0.098 4.098 20 N -0.244 5.244 21 C -0.135 4.135 22 C -0.084 4.084 23 H 0.108 0.892 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.219 0.781 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.469 -2.692 14.704 15.917 hybrid contribution 0.995 -1.542 -1.448 2.338 sum 6.464 -4.234 13.256 15.344 Atomic orbital electron populations 1.22071 0.98549 0.99009 1.00858 1.18710 0.90982 0.93952 0.80137 0.93466 1.21193 1.32473 1.13197 0.90426 0.92219 1.24891 0.94818 0.94956 0.99036 1.69893 1.35807 1.22436 1.23957 0.86514 0.79139 0.79595 0.81870 1.20176 1.21110 1.20215 1.46549 1.65238 1.13484 1.10712 1.20472 0.78731 0.87667 0.84837 1.90646 1.51270 1.16110 1.85197 1.21855 1.02577 0.99233 0.94051 1.21599 1.00344 0.94834 0.92508 0.89316 1.22413 0.97044 0.99152 0.97403 1.23118 0.97162 0.89619 0.99878 1.65405 1.20048 1.21117 1.17784 1.22486 0.89410 1.00293 1.01304 1.23193 0.95797 1.00381 0.88991 0.89227 0.95570 0.96665 0.92531 0.78058 0.89760 0.89306 0.90931 0.91180 0.90488 0.94074 0.95485 0.91190 0.91623 0.94057 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.77 2.56 -69.08 -0.18 6.59 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.71 -14.78 5.07 -54.93 -0.28 -15.05 16 13 C 0.50 9.72 7.60 -10.99 -0.08 9.64 16 14 O -0.55 -12.93 14.61 5.55 0.08 -12.85 16 15 C -0.14 -1.89 4.89 -27.88 -0.14 -2.03 16 16 C -0.07 -1.01 2.66 -89.24 -0.24 -1.24 16 17 H 0.09 1.37 7.91 -51.93 -0.41 0.96 16 18 C -0.12 -1.30 6.65 -25.35 -0.17 -1.47 16 19 C 0.03 0.32 6.49 -2.18 -0.01 0.31 16 20 N -0.52 -6.73 5.66 -238.22 -1.35 -8.08 16 21 C 0.01 0.15 9.53 60.06 0.57 0.73 16 22 C 0.04 0.65 5.18 -2.18 -0.01 0.63 16 23 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.39 6.92 8.54 -40.82 -0.35 6.57 16 28 H 0.08 1.04 7.98 -51.93 -0.41 0.63 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.42 7.98 -51.93 -0.41 0.00 16 34 H 0.03 0.29 7.97 -51.93 -0.41 -0.13 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.62 7.51 -51.93 -0.39 0.23 16 38 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -30.36 306.39 -8.03 -38.39 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.40 Total: 4.76 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.31 Total: -3.01 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -1.00 Total: -47.56 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.36 -8.03 -38.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.183 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds