Wall clock time and date at job start Mon Mar 30 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47573 * 2 1 4 4 C 1.50700 * 109.46916 * 239.99311 * 2 1 3 5 5 H 1.07999 * 120.00230 * 239.99655 * 4 2 1 6 6 C 1.37885 * 119.99844 * 60.00751 * 4 2 1 7 7 N 1.31512 * 119.99950 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47272 * 59.99561 * 8 6 4 10 10 H 1.48503 * 109.46982 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47075 * 299.99459 * 8 6 4 12 12 N 1.46498 * 109.46877 * 119.99996 * 2 1 3 13 13 C 1.34779 * 120.00066 * 274.99746 * 12 2 1 14 14 O 1.21287 * 119.99458 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00253 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.46914 * 179.97438 * 15 13 12 17 17 H 1.08999 * 110.28569 * 52.87187 * 16 15 13 18 18 C 1.54259 * 110.32130 * 174.99653 * 16 15 13 19 19 C 1.54381 * 105.06078 * 118.89688 * 18 16 15 20 20 N 1.48568 * 104.59175 * 23.85345 * 19 18 16 21 21 C 1.46897 * 110.99712 * 200.96296 * 20 19 18 22 22 C 1.48561 * 104.22108 * 320.51487 * 20 19 18 23 23 H 1.09006 * 109.46607 * 60.00018 * 1 2 3 24 24 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47257 * 300.00728 * 1 2 3 26 26 H 0.96996 * 120.00029 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00310 * 94.99969 * 12 2 1 28 28 H 1.08995 * 109.47549 * 60.00132 * 15 13 12 29 29 H 1.09000 * 109.46862 * 299.99812 * 15 13 12 30 30 H 1.08994 * 110.32531 * 237.79128 * 18 16 15 31 31 H 1.09006 * 110.32511 * 0.02562 * 18 16 15 32 32 H 1.08992 * 110.41606 * 142.63342 * 19 18 16 33 33 H 1.09007 * 110.41085 * 264.96035 * 19 18 16 34 34 H 1.08998 * 109.47444 * 60.12683 * 21 20 19 35 35 H 1.09001 * 109.47072 * 180.12939 * 21 20 19 36 36 H 1.09006 * 109.47075 * 300.12409 * 21 20 19 37 37 H 1.08998 * 110.41386 * 280.70938 * 22 20 19 38 38 H 1.09004 * 110.40913 * 158.26170 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4828 7 7 0.9429 0.8295 -2.6035 8 14 2.3225 -1.1199 -4.0079 9 1 1.8280 -2.5201 -4.0080 10 1 1.8269 -0.4202 -5.2204 11 1 3.8074 -1.1193 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1585 2.4116 15 6 2.6498 -0.7285 3.5875 16 6 2.7018 0.2549 4.7586 17 1 1.7381 0.7497 4.8796 18 6 3.0942 -0.4790 6.0574 19 6 4.4144 0.1819 6.5085 20 7 4.3899 1.5304 5.8852 21 6 5.7440 2.0926 5.7938 22 6 3.8179 1.2976 4.5341 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 0.7089 1.1611 -3.4845 27 1 2.2490 -1.6318 1.1527 28 1 3.6491 -1.1203 3.3980 29 1 1.9776 -1.5507 3.8326 30 1 2.3241 -0.3430 6.8166 31 1 3.2502 -1.5397 5.8606 32 1 4.4459 0.2658 7.5947 33 1 5.2689 -0.3904 6.1472 34 1 6.3684 1.4393 5.1845 35 1 5.6969 3.0807 5.3361 36 1 6.1713 2.1752 6.7932 37 1 4.5790 0.9010 3.8621 38 1 3.4002 2.2214 4.1338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260049097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:58 Heat of formation + Delta-G solvation = -68.784897 kcal Electronic energy + Delta-G solvation = -17487.536250 eV Core-core repulsion = 14749.332255 eV Total energy + Delta-G solvation = -2738.203995 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89789 -39.47562 -36.69941 -34.38524 -34.19430 -31.37483 -30.30169 -28.14567 -27.33255 -25.86816 -23.08766 -22.13470 -21.24797 -20.75767 -18.92220 -17.60005 -17.16558 -16.74592 -16.36320 -16.21956 -15.70343 -15.15985 -14.73198 -14.53107 -14.35197 -13.90745 -13.68067 -13.21682 -13.14465 -12.87480 -12.82871 -12.69682 -12.38624 -12.31606 -12.24713 -12.15949 -12.04146 -11.74860 -11.40918 -11.11263 -10.65780 -10.50594 -9.69902 -9.47571 -8.17375 -6.35333 1.44507 1.46678 1.54590 1.90753 2.36443 2.69054 3.11043 3.12951 3.69244 3.75169 3.92275 4.16750 4.32072 4.40666 4.48721 4.55094 4.62435 4.69251 4.75513 4.79106 4.88577 4.92617 4.95651 5.01604 5.10171 5.11038 5.29270 5.38595 5.44920 5.62955 5.70944 5.86719 5.93210 6.08051 6.11085 6.73277 7.03139 7.33203 7.63700 8.88718 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040612 B = 0.004714 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.290715 B = 5938.187115 C = 6087.710627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.006 1.006 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.709 5.709 13 C 0.491 3.509 14 O -0.599 6.599 15 C -0.120 4.120 16 C -0.075 4.075 17 H 0.063 0.937 18 C -0.112 4.112 19 C 0.029 3.971 20 N -0.536 5.536 21 C 0.013 3.987 22 C 0.046 3.954 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.010 0.990 26 H 0.265 0.735 27 H 0.405 0.595 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.290 -6.825 15.625 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.012 0.988 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.359 5.359 13 C 0.279 3.721 14 O -0.481 6.481 15 C -0.160 4.160 16 C -0.094 4.094 17 H 0.082 0.918 18 C -0.150 4.150 19 C -0.098 4.098 20 N -0.260 5.260 21 C -0.136 4.136 22 C -0.082 4.082 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.240 0.760 28 H 0.128 0.872 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.700 -5.489 15.825 18.041 hybrid contribution 0.621 -0.601 -1.733 1.936 sum 7.322 -6.090 14.093 17.009 Atomic orbital electron populations 1.21886 0.98451 0.99379 0.99410 1.18293 0.91037 0.91800 0.82295 0.98780 1.21537 1.32608 1.13572 0.90861 0.90829 1.25829 0.94864 0.95578 1.02412 1.70054 1.37012 1.24002 1.24637 0.85383 0.78612 0.78736 0.77513 1.18755 1.21238 1.19590 1.46319 1.65444 1.14235 1.09854 1.21547 0.77406 0.87282 0.85874 1.90637 1.52958 1.18502 1.85961 1.21852 1.04328 0.99297 0.90543 1.21572 0.98677 0.94832 0.94351 0.91846 1.22400 0.97124 1.00124 0.95368 1.23230 0.97601 0.88289 1.00677 1.65368 1.21205 1.22960 1.16467 1.22532 0.88677 0.99813 1.02547 1.23023 0.96142 0.98997 0.90059 0.91701 0.94055 0.97043 0.92585 0.76002 0.87173 0.85904 0.90145 0.88510 0.88841 0.92939 0.95119 0.92091 0.89574 0.94578 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.15 2.56 44.25 0.11 14.26 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.37 16 4 C -0.55 -29.12 8.73 25.60 0.22 -28.90 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -53.31 11.32 21.45 0.24 -53.07 16 8 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 9 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 12 N -0.71 -29.14 5.07 -446.10 -2.26 -31.40 16 13 C 0.49 19.13 7.60 87.66 0.67 19.80 16 14 O -0.60 -29.24 14.61 -3.05 -0.04 -29.28 16 15 C -0.12 -3.03 4.89 29.85 0.15 -2.89 16 16 C -0.07 -1.95 2.66 -9.90 -0.03 -1.98 16 17 H 0.06 1.98 7.91 -2.39 -0.02 1.96 16 18 C -0.11 -2.00 6.65 31.49 0.21 -1.79 16 19 C 0.03 0.54 6.49 86.45 0.56 1.10 16 20 N -0.54 -13.30 5.66 -907.61 -5.14 -18.43 16 21 C 0.01 0.27 9.53 127.69 1.22 1.49 16 22 C 0.05 1.36 5.18 86.45 0.45 1.81 16 23 H 0.06 3.66 6.07 -2.38 -0.01 3.65 16 24 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.40 13.68 8.54 -92.71 -0.79 12.89 16 28 H 0.11 2.30 7.98 -2.39 -0.02 2.28 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.25 7.71 -2.38 -0.02 1.23 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 0.86 7.98 -2.38 -0.02 0.84 16 34 H 0.03 0.61 7.97 -2.39 -0.02 0.59 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.04 1.08 7.51 -2.39 -0.02 1.06 16 38 H 0.05 1.96 7.74 -2.38 -0.02 1.94 16 Total: -1.00 -68.60 306.39 -0.26 -68.86 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.24 Total: 21.38 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 4.67 Total: -2.10 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -7.16 Total: -102.91 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.04 Total: -29.28 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -68.60 -0.26 -68.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.079 kcal (2) G-P(sol) polarization free energy of solvation -68.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds