Wall clock time and date at job start Mon Mar 30 2020 03:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21290 * 119.99507 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00516 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.47046 * 180.02562 * 15 13 12 17 17 H 1.08999 * 110.64673 * 308.15242 * 16 15 13 18 18 C 1.54593 * 110.72328 * 185.00112 * 16 15 13 19 19 C 1.54000 * 105.14198 * 219.68607 * 18 16 15 20 20 N 1.47895 * 107.05579 * 358.77188 * 19 18 16 21 21 C 1.46907 * 111.00088 * 145.84394 * 20 19 18 22 22 C 1.48531 * 105.82097 * 25.33411 * 20 19 18 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 28 28 H 1.09003 * 109.46738 * 300.00359 * 15 13 12 29 29 H 1.08994 * 109.46445 * 60.00413 * 15 13 12 30 30 H 1.08997 * 110.31162 * 338.60191 * 18 16 15 31 31 H 1.09006 * 110.31021 * 100.76881 * 18 16 15 32 32 H 1.08994 * 109.91645 * 118.12529 * 19 18 16 33 33 H 1.09002 * 109.91342 * 239.22518 * 19 18 16 34 34 H 1.09000 * 109.46596 * 59.87242 * 21 20 19 35 35 H 1.08995 * 109.47090 * 179.87444 * 21 20 19 36 36 H 1.09003 * 109.46968 * 299.87794 * 21 20 19 37 37 H 1.09002 * 110.67079 * 202.35832 * 22 20 19 38 38 H 1.09000 * 110.66993 * 79.22708 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8589 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5879 16 6 2.7009 0.2548 -4.7588 17 1 1.7456 0.7669 -4.8734 18 6 3.0925 -0.4715 -6.0661 19 6 4.0430 0.4965 -6.7949 20 7 4.1522 1.7103 -5.9569 21 6 5.4977 2.2930 -6.0470 22 6 3.8537 1.2725 -4.5693 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7006 1.1552 3.4844 27 1 2.2490 -1.6317 -1.1528 28 1 3.6480 -1.1211 -3.3987 29 1 1.9759 -1.5503 -3.8327 30 1 3.6050 -1.4066 -5.8405 31 1 2.2073 -0.6613 -6.6732 32 1 5.0241 0.0362 -6.9113 33 1 3.6345 0.7523 -7.7725 34 1 5.7090 2.5606 -7.0823 35 1 5.5498 3.1852 -5.4232 36 1 6.2326 1.5653 -5.7026 37 1 3.5260 2.1161 -3.9618 38 1 4.7231 0.7902 -4.1225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260049109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:01 Heat of formation + Delta-G solvation = -46.731831 kcal Electronic energy + Delta-G solvation = -17449.715378 eV Core-core repulsion = 14712.467676 eV Total energy + Delta-G solvation = -2737.247702 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50958 -38.19376 -34.80842 -33.19525 -32.32703 -30.04603 -28.83397 -26.97965 -25.25194 -24.80087 -21.41857 -20.97379 -19.95927 -19.28913 -17.18700 -16.12759 -15.57600 -15.29783 -15.03360 -14.87802 -14.08686 -13.96999 -13.57430 -13.11402 -12.82522 -12.42041 -12.15022 -12.04085 -11.67525 -11.42992 -11.32659 -11.23350 -10.99376 -10.97245 -10.69681 -10.63859 -10.43592 -10.27884 -10.22170 -9.03822 -8.91378 -8.52910 -8.43874 -7.86200 -6.11222 -4.20574 3.24590 3.31214 3.32972 3.46886 3.97920 4.17364 4.39320 4.67074 4.73182 4.95893 5.20125 5.21563 5.29887 5.36927 5.43111 5.51186 5.67985 5.71016 5.74006 5.79155 5.86443 5.97936 6.00188 6.34184 6.46596 6.84915 6.88763 6.99475 7.02649 7.18021 7.50492 7.59171 7.71681 7.94053 8.17348 8.71362 8.80518 9.18940 9.47473 10.94693 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042798 B = 0.004612 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.075037 B = 6069.536271 C = 6185.600797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.498 3.502 14 O -0.553 6.553 15 C -0.135 4.135 16 C -0.072 4.072 17 H 0.092 0.908 18 C -0.129 4.129 19 C 0.035 3.965 20 N -0.525 5.525 21 C 0.017 3.983 22 C 0.043 3.957 23 H 0.014 0.986 24 H 0.025 0.975 25 H 0.089 0.911 26 H 0.264 0.736 27 H 0.387 0.613 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.096 0.904 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 -3.924 -14.862 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.360 5.360 13 C 0.283 3.717 14 O -0.432 6.432 15 C -0.176 4.176 16 C -0.091 4.091 17 H 0.110 0.890 18 C -0.168 4.168 19 C -0.093 4.093 20 N -0.249 5.249 21 C -0.132 4.132 22 C -0.084 4.084 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.219 0.781 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.114 0.886 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.292 -2.535 -14.901 16.015 hybrid contribution 1.070 -1.599 1.189 2.262 sum 6.361 -4.134 -13.712 15.671 Atomic orbital electron populations 1.22070 0.98549 0.99011 1.00878 1.18717 0.90985 0.93975 0.80149 0.93446 1.21230 1.32301 1.13251 0.90416 0.92160 1.24889 0.94803 0.94983 0.99045 1.69903 1.35806 1.22553 1.23835 0.86459 0.78584 0.79844 0.82258 1.20579 1.21065 1.19877 1.46547 1.65244 1.13485 1.10705 1.20455 0.78728 0.87668 0.84822 1.90650 1.51245 1.16087 1.85184 1.21748 1.02658 0.99217 0.93971 1.21775 1.00244 0.94894 0.92208 0.88957 1.22512 0.99491 0.98084 0.96668 1.22852 0.98367 0.90250 0.97807 1.64737 1.26355 1.26094 1.07690 1.22497 0.88920 0.99755 1.02034 1.23347 0.96472 0.99192 0.89401 0.96654 0.95576 0.89209 0.92593 0.78054 0.89685 0.89288 0.91413 0.90934 0.94105 0.90638 0.91650 0.91186 0.95616 0.88612 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.76 2.56 -69.08 -0.18 6.58 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.05 11.31 55.43 0.63 -24.43 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.71 -14.76 5.07 -54.93 -0.28 -15.03 16 13 C 0.50 9.72 7.63 -10.99 -0.08 9.64 16 14 O -0.55 -12.94 14.51 5.55 0.08 -12.86 16 15 C -0.14 -1.87 5.08 -27.88 -0.14 -2.01 16 16 C -0.07 -0.98 2.62 -88.76 -0.23 -1.22 16 17 H 0.09 1.45 7.88 -51.93 -0.41 1.04 16 18 C -0.13 -1.37 6.51 -25.37 -0.17 -1.53 16 19 C 0.04 0.38 6.70 -2.75 -0.02 0.36 16 20 N -0.52 -6.87 5.55 -238.71 -1.33 -8.20 16 21 C 0.02 0.18 9.40 60.07 0.56 0.75 16 22 C 0.04 0.63 5.46 -1.90 -0.01 0.62 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 28 H 0.08 1.03 7.99 -51.93 -0.42 0.62 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.40 7.73 -51.93 -0.40 0.00 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.26 8.00 -51.93 -0.42 -0.15 16 37 H 0.10 1.66 7.41 -51.93 -0.38 1.28 16 38 H 0.04 0.57 7.76 -51.93 -0.40 0.17 16 LS Contribution 306.38 15.07 4.62 4.62 Total: -1.00 -30.42 306.38 -8.01 -38.43 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.39 Total: 4.80 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.32 Total: -2.98 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.98 Total: -47.66 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.42 -8.01 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.298 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds