Wall clock time and date at job start Mon Mar 30 2020 03:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21290 * 119.99507 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00516 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.47046 * 180.02562 * 15 13 12 17 17 H 1.08999 * 110.64673 * 308.15242 * 16 15 13 18 18 C 1.54593 * 110.72328 * 185.00112 * 16 15 13 19 19 C 1.54000 * 105.14198 * 219.68607 * 18 16 15 20 20 N 1.47895 * 107.05579 * 358.77188 * 19 18 16 21 21 C 1.46907 * 111.00088 * 145.84394 * 20 19 18 22 22 C 1.48531 * 105.82097 * 25.33411 * 20 19 18 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 28 28 H 1.09003 * 109.46738 * 300.00359 * 15 13 12 29 29 H 1.08994 * 109.46445 * 60.00413 * 15 13 12 30 30 H 1.08997 * 110.31162 * 338.60191 * 18 16 15 31 31 H 1.09006 * 110.31021 * 100.76881 * 18 16 15 32 32 H 1.08994 * 109.91645 * 118.12529 * 19 18 16 33 33 H 1.09002 * 109.91342 * 239.22518 * 19 18 16 34 34 H 1.09000 * 109.46596 * 59.87242 * 21 20 19 35 35 H 1.08995 * 109.47090 * 179.87444 * 21 20 19 36 36 H 1.09003 * 109.46968 * 299.87794 * 21 20 19 37 37 H 1.09002 * 110.67079 * 202.35832 * 22 20 19 38 38 H 1.09000 * 110.66993 * 79.22708 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8589 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5879 16 6 2.7009 0.2548 -4.7588 17 1 1.7456 0.7669 -4.8734 18 6 3.0925 -0.4715 -6.0661 19 6 4.0430 0.4965 -6.7949 20 7 4.1522 1.7103 -5.9569 21 6 5.4977 2.2930 -6.0470 22 6 3.8537 1.2725 -4.5693 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7006 1.1552 3.4844 27 1 2.2490 -1.6317 -1.1528 28 1 3.6480 -1.1211 -3.3987 29 1 1.9759 -1.5503 -3.8327 30 1 3.6050 -1.4066 -5.8405 31 1 2.2073 -0.6613 -6.6732 32 1 5.0241 0.0362 -6.9113 33 1 3.6345 0.7523 -7.7725 34 1 5.7090 2.5606 -7.0823 35 1 5.5498 3.1852 -5.4232 36 1 6.2326 1.5653 -5.7026 37 1 3.5260 2.1161 -3.9618 38 1 4.7231 0.7902 -4.1225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260049109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:00 Heat of formation + Delta-G solvation = -68.943847 kcal Electronic energy + Delta-G solvation = -17450.678563 eV Core-core repulsion = 14712.467676 eV Total energy + Delta-G solvation = -2738.210888 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85919 -39.48834 -36.69667 -34.38278 -34.18724 -31.38268 -30.33214 -28.14684 -27.33083 -25.84722 -23.11278 -22.01840 -21.26673 -20.82720 -18.89903 -17.59786 -17.16468 -16.79775 -16.33494 -16.19019 -15.68728 -15.07180 -14.70237 -14.58741 -14.36192 -14.00596 -13.65756 -13.20808 -13.15013 -12.90722 -12.84198 -12.71471 -12.38989 -12.26352 -12.21937 -12.15357 -12.08796 -11.71159 -11.41424 -11.10274 -10.65672 -10.50199 -9.69107 -9.38605 -8.17107 -6.34965 1.44965 1.45426 1.56338 1.91818 2.36688 2.68796 3.10739 3.13440 3.69252 3.73451 3.97554 4.14372 4.29247 4.42433 4.48622 4.56042 4.61966 4.68857 4.76277 4.80074 4.89313 4.93361 4.95738 5.01389 5.07221 5.11556 5.29689 5.39850 5.45680 5.63781 5.71612 5.91875 5.94067 6.11508 6.11936 6.74011 7.04054 7.33708 7.64805 8.89205 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042798 B = 0.004612 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.075037 B = 6069.536271 C = 6185.600797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.258 1.258 12 N -0.709 5.709 13 C 0.491 3.509 14 O -0.599 6.599 15 C -0.119 4.119 16 C -0.073 4.073 17 H 0.064 0.936 18 C -0.119 4.119 19 C 0.033 3.967 20 N -0.545 5.545 21 C 0.016 3.984 22 C 0.045 3.955 23 H 0.010 0.990 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.265 0.735 27 H 0.405 0.595 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.053 0.947 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 -6.671 -15.986 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.182 1.182 12 N -0.358 5.358 13 C 0.279 3.721 14 O -0.481 6.481 15 C -0.159 4.159 16 C -0.093 4.093 17 H 0.082 0.918 18 C -0.157 4.157 19 C -0.094 4.094 20 N -0.270 5.270 21 C -0.132 4.132 22 C -0.083 4.083 23 H 0.029 0.971 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.240 0.760 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.542 -5.322 -16.061 18.141 hybrid contribution 0.686 -0.654 1.486 1.762 sum 7.228 -5.977 -14.575 17.332 Atomic orbital electron populations 1.21886 0.98469 0.99384 0.99411 1.18300 0.91029 0.91827 0.82320 0.98762 1.21568 1.32422 1.13607 0.90844 0.90788 1.25827 0.94846 0.95618 1.02420 1.70061 1.37010 1.24120 1.24562 0.85332 0.77712 0.79237 0.77966 1.20409 1.21005 1.18227 1.46314 1.65450 1.14235 1.09842 1.21537 0.77390 0.87272 0.85871 1.90641 1.52952 1.18516 1.85959 1.21742 1.04478 0.99237 0.90432 1.21728 0.98510 0.94947 0.94124 0.91789 1.22490 1.00229 0.98429 0.94503 1.22952 0.99401 0.89384 0.97677 1.64680 1.27786 1.27629 1.06878 1.22538 0.88170 0.99499 1.03033 1.23178 0.97005 0.98021 0.90113 0.97062 0.94046 0.91691 0.92600 0.75989 0.86944 0.85966 0.89018 0.89621 0.92507 0.89685 0.89850 0.92162 0.94804 0.92827 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.84 9.26 71.98 0.67 -6.18 16 2 C 0.27 14.13 2.56 44.24 0.11 14.24 16 3 H -0.01 -0.35 7.58 -2.38 -0.02 -0.36 16 4 C -0.55 -29.03 8.73 25.60 0.22 -28.81 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -53.36 11.31 21.45 0.24 -53.12 16 8 Si 0.97 42.03 29.54 68.60 2.03 44.05 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 12 N -0.71 -29.11 5.07 -446.09 -2.26 -31.37 16 13 C 0.49 19.14 7.63 87.66 0.67 19.81 16 14 O -0.60 -29.34 14.51 -3.06 -0.04 -29.38 16 15 C -0.12 -2.98 5.08 29.85 0.15 -2.83 16 16 C -0.07 -1.92 2.62 -9.59 -0.03 -1.94 16 17 H 0.06 2.03 7.88 -2.39 -0.02 2.01 16 18 C -0.12 -2.10 6.51 31.47 0.20 -1.89 16 19 C 0.03 0.62 6.70 86.45 0.58 1.20 16 20 N -0.55 -13.74 5.55 -909.15 -5.05 -18.78 16 21 C 0.02 0.33 9.40 127.69 1.20 1.53 16 22 C 0.04 1.31 5.46 86.65 0.47 1.78 16 23 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 24 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 3.67 6.06 -2.38 -0.01 3.66 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.41 13.66 8.54 -92.70 -0.79 12.87 16 28 H 0.11 2.29 7.99 -2.39 -0.02 2.27 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.09 1.23 7.85 -2.39 -0.02 1.21 16 31 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.06 0.89 7.73 -2.39 -0.02 0.88 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.03 0.64 8.00 -2.39 -0.02 0.62 16 37 H 0.05 1.99 7.41 -2.39 -0.02 1.98 16 38 H 0.04 1.24 7.76 -2.39 -0.02 1.22 16 Total: -1.00 -68.90 306.38 -0.14 -69.05 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.24 Total: 21.51 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.70 Total: -1.96 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -7.07 Total: -103.27 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.04 Total: -29.38 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -68.90 -0.14 -69.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.103 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds