Wall clock time and date at job start Mon Mar 30 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47075 * 2 1 4 4 C 1.50701 * 109.47221 * 239.99759 * 2 1 3 5 5 H 1.07998 * 120.00315 * 245.37450 * 4 2 1 6 6 C 1.37886 * 119.99729 * 65.37940 * 4 2 1 7 7 N 1.31510 * 119.99785 * 185.16679 * 6 4 2 8 8 Si 1.86800 * 120.00058 * 5.16194 * 6 4 2 9 9 H 1.48503 * 109.47086 * 270.00202 * 8 6 4 10 10 H 1.48499 * 109.47126 * 30.00251 * 8 6 4 11 11 H 1.48497 * 109.47205 * 150.00035 * 8 6 4 12 12 N 1.46506 * 109.46816 * 120.00162 * 2 1 3 13 13 C 1.34781 * 119.99869 * 274.99908 * 12 2 1 14 14 O 1.21287 * 119.99726 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99984 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47289 * 180.02562 * 15 13 12 17 17 H 1.09009 * 110.64035 * 308.15396 * 16 15 13 18 18 C 1.54590 * 110.72596 * 185.00613 * 16 15 13 19 19 C 1.53995 * 105.13879 * 219.68246 * 18 16 15 20 20 N 1.47897 * 107.05792 * 358.77304 * 19 18 16 21 21 C 1.46902 * 111.00462 * 145.84122 * 20 19 18 22 22 C 1.48538 * 105.82010 * 25.32906 * 20 19 18 23 23 H 1.08994 * 109.47399 * 294.97776 * 1 2 3 24 24 H 1.08999 * 109.47135 * 54.97715 * 1 2 3 25 25 H 1.09000 * 109.47428 * 174.97329 * 1 2 3 26 26 H 0.96997 * 120.00109 * 354.98907 * 7 6 4 27 27 H 0.96998 * 119.99683 * 95.00054 * 12 2 1 28 28 H 1.08999 * 109.47063 * 300.00612 * 15 13 12 29 29 H 1.09000 * 109.46896 * 60.00202 * 15 13 12 30 30 H 1.09009 * 110.30506 * 338.59439 * 18 16 15 31 31 H 1.08992 * 110.31289 * 100.76516 * 18 16 15 32 32 H 1.08999 * 109.91894 * 118.12183 * 19 18 16 33 33 H 1.08994 * 109.92030 * 239.21818 * 19 18 16 34 34 H 1.09004 * 109.46640 * 59.87350 * 21 20 19 35 35 H 1.08999 * 109.47341 * 179.87414 * 21 20 19 36 36 H 1.08999 * 109.46846 * 299.88000 * 21 20 19 37 37 H 1.09005 * 110.66785 * 202.35997 * 22 20 19 38 38 H 1.09000 * 110.66940 * 79.23304 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5798 -1.6364 -1.1337 6 6 1.7931 -0.1783 -2.4797 7 7 2.1414 -0.8472 -3.5571 8 14 0.9743 1.4929 -2.6419 9 1 -0.4989 1.3180 -2.7074 10 1 1.3215 2.3304 -1.4659 11 1 1.4493 2.1587 -3.8813 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8581 1.1584 2.4117 15 6 2.6487 -0.7289 3.5878 16 6 2.6996 0.2541 4.7592 17 1 3.2509 1.1530 4.4828 18 6 3.3280 -0.4115 6.0049 19 6 2.4964 0.0990 7.1962 20 7 1.4791 1.0236 6.6507 21 6 0.2273 0.9395 7.4149 22 6 1.2702 0.6089 5.2397 23 1 -0.3634 0.4339 0.9315 24 1 -0.3633 0.5898 -0.8416 25 1 -0.3634 -1.0237 -0.0900 26 1 2.6312 -1.6803 -3.4735 27 1 2.2489 -1.6318 1.1526 28 1 1.9758 -1.5507 3.8325 29 1 3.6478 -1.1214 3.3987 30 1 3.2562 -1.4967 5.9308 31 1 4.3690 -0.1069 6.1121 32 1 2.0078 -0.7386 7.6941 33 1 3.1406 0.6248 7.9007 34 1 0.4186 1.2019 8.4554 35 1 -0.5025 1.6311 6.9940 36 1 -0.1628 -0.0769 7.3624 37 1 0.8603 1.4315 4.6536 38 1 0.6190 -0.2637 5.1876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260049134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:06 Heat of formation + Delta-G solvation = -46.491175 kcal Electronic energy + Delta-G solvation = -17536.956286 eV Core-core repulsion = 14799.719019 eV Total energy + Delta-G solvation = -2737.237267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.64667 -38.35238 -35.01780 -33.30109 -32.40623 -30.34302 -29.37437 -27.15329 -25.06534 -24.67058 -21.41823 -20.99496 -19.95170 -19.50029 -17.78759 -16.59877 -15.78592 -15.57628 -15.10920 -14.86396 -14.09066 -13.88740 -13.61894 -13.18322 -12.83541 -12.75473 -12.35174 -12.24685 -12.04125 -11.73549 -11.52521 -11.46213 -11.31060 -11.17254 -10.75031 -10.53927 -10.51694 -10.07415 -9.77057 -9.12596 -8.85358 -8.55748 -8.51831 -8.14289 -6.55295 -4.23663 3.28242 3.36377 3.46136 3.59998 3.87122 4.06684 4.41598 4.59245 4.63477 4.87201 5.11625 5.20177 5.21953 5.29074 5.32339 5.43135 5.58668 5.61436 5.64000 5.71226 5.76440 5.90309 5.91090 6.23300 6.35941 6.37963 6.45908 6.62540 6.80310 6.90879 6.94466 7.28153 7.39852 7.65731 8.22455 8.49777 8.70579 9.01198 9.47244 10.85126 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046581 B = 0.004992 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.962154 B = 5608.088840 C = 5922.973040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.234 3.766 3 H 0.048 0.952 4 C -0.609 4.609 5 H 0.061 0.939 6 C 0.035 3.965 7 N -0.906 5.906 8 Si 1.051 2.949 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.705 5.705 13 C 0.500 3.500 14 O -0.553 6.553 15 C -0.135 4.135 16 C -0.072 4.072 17 H 0.093 0.907 18 C -0.129 4.129 19 C 0.035 3.965 20 N -0.525 5.525 21 C 0.017 3.983 22 C 0.043 3.957 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.268 0.732 27 H 0.392 0.608 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.095 0.905 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -1.034 19.296 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.130 3.870 3 H 0.066 0.934 4 C -0.647 4.647 5 H 0.079 0.921 6 C -0.171 4.171 7 N -0.540 5.540 8 Si 0.880 3.120 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.353 5.353 13 C 0.285 3.715 14 O -0.432 6.432 15 C -0.175 4.175 16 C -0.092 4.092 17 H 0.111 0.889 18 C -0.168 4.168 19 C -0.093 4.093 20 N -0.249 5.249 21 C -0.132 4.132 22 C -0.084 4.084 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.224 0.776 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.113 0.887 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.127 1.432 18.240 18.331 hybrid contribution 0.357 -2.658 1.023 2.871 sum -0.770 -1.226 19.264 19.318 Atomic orbital electron populations 1.22387 0.99306 1.00716 0.99184 1.19183 0.90255 0.94772 0.82740 0.93427 1.22179 1.40685 1.10631 0.91206 0.92071 1.25712 0.96211 1.03515 0.91630 1.70832 1.36258 1.16700 1.30217 0.83910 0.76401 0.75572 0.76080 1.20840 1.19958 1.21430 1.46294 1.65233 1.13676 1.10078 1.20532 0.78541 0.87634 0.84812 1.90644 1.51283 1.16075 1.85236 1.21738 1.02954 0.99096 0.93752 1.21786 0.96380 0.98545 0.92482 0.88874 1.22509 0.99899 1.00124 0.94224 1.22854 0.94685 0.94441 0.97288 1.64732 1.08355 1.48976 1.02791 1.22498 0.92068 0.99952 0.98684 1.23340 0.96509 1.00076 0.88468 0.94850 0.93220 0.93243 0.92199 0.77558 0.89592 0.89051 0.91376 0.90839 0.94063 0.90562 0.91585 0.91215 0.95619 0.88697 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.07 37.16 0.34 -3.21 16 2 C 0.23 5.66 2.14 -69.08 -0.15 5.51 16 3 H 0.05 1.27 6.08 -51.93 -0.32 0.95 16 4 C -0.61 -16.59 9.10 -34.44 -0.31 -16.90 16 5 H 0.06 1.73 7.95 -52.49 -0.42 1.32 16 6 C 0.03 0.99 5.43 -17.82 -0.10 0.89 16 7 N -0.91 -27.30 13.70 55.43 0.76 -26.54 16 8 Si 1.05 25.69 25.29 -169.99 -4.30 21.39 16 9 H -0.28 -6.51 6.81 56.52 0.38 -6.13 16 10 H -0.27 -6.51 6.36 56.52 0.36 -6.15 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 N -0.71 -14.12 5.07 -54.93 -0.28 -14.39 16 13 C 0.50 9.27 7.63 -10.99 -0.08 9.18 16 14 O -0.55 -12.19 14.51 5.55 0.08 -12.11 16 15 C -0.13 -1.77 5.08 -27.89 -0.14 -1.91 16 16 C -0.07 -0.94 2.62 -88.77 -0.23 -1.18 16 17 H 0.09 1.41 7.88 -51.92 -0.41 1.00 16 18 C -0.13 -1.31 6.51 -25.38 -0.17 -1.47 16 19 C 0.04 0.36 6.70 -2.76 -0.02 0.34 16 20 N -0.52 -6.48 5.55 -238.72 -1.33 -7.81 16 21 C 0.02 0.17 9.40 60.07 0.56 0.74 16 22 C 0.04 0.59 5.46 -1.90 -0.01 0.58 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 1.13 4.40 -51.93 -0.23 0.90 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.27 7.97 8.72 -40.82 -0.36 7.62 16 27 H 0.39 6.93 8.53 -40.82 -0.35 6.58 16 28 H 0.09 0.97 7.99 -51.93 -0.42 0.56 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.60 7.85 -51.92 -0.41 0.19 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.38 7.73 -51.93 -0.40 -0.02 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.03 0.24 8.00 -51.93 -0.42 -0.17 16 37 H 0.09 1.53 7.41 -51.93 -0.38 1.15 16 38 H 0.04 0.52 7.76 -51.93 -0.40 0.12 16 LS Contribution 300.81 15.07 4.53 4.53 Total: -1.00 -31.34 300.81 -7.15 -38.50 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.32 Total: 3.87 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.31 Total: -7.43 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.84 Total: -48.75 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -4.30 Total: 21.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.34 -7.15 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.994 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds