Wall clock time and date at job start Mon Mar 30 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47075 * 2 1 4 4 C 1.50701 * 109.47221 * 239.99759 * 2 1 3 5 5 H 1.07998 * 120.00315 * 245.37450 * 4 2 1 6 6 C 1.37886 * 119.99729 * 65.37940 * 4 2 1 7 7 N 1.31510 * 119.99785 * 185.16679 * 6 4 2 8 8 Si 1.86800 * 120.00058 * 5.16194 * 6 4 2 9 9 H 1.48503 * 109.47086 * 270.00202 * 8 6 4 10 10 H 1.48499 * 109.47126 * 30.00251 * 8 6 4 11 11 H 1.48497 * 109.47205 * 150.00035 * 8 6 4 12 12 N 1.46506 * 109.46816 * 120.00162 * 2 1 3 13 13 C 1.34781 * 119.99869 * 274.99908 * 12 2 1 14 14 O 1.21287 * 119.99726 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99984 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47289 * 180.02562 * 15 13 12 17 17 H 1.09009 * 110.64035 * 308.15396 * 16 15 13 18 18 C 1.54590 * 110.72596 * 185.00613 * 16 15 13 19 19 C 1.53995 * 105.13879 * 219.68246 * 18 16 15 20 20 N 1.47897 * 107.05792 * 358.77304 * 19 18 16 21 21 C 1.46902 * 111.00462 * 145.84122 * 20 19 18 22 22 C 1.48538 * 105.82010 * 25.32906 * 20 19 18 23 23 H 1.08994 * 109.47399 * 294.97776 * 1 2 3 24 24 H 1.08999 * 109.47135 * 54.97715 * 1 2 3 25 25 H 1.09000 * 109.47428 * 174.97329 * 1 2 3 26 26 H 0.96997 * 120.00109 * 354.98907 * 7 6 4 27 27 H 0.96998 * 119.99683 * 95.00054 * 12 2 1 28 28 H 1.08999 * 109.47063 * 300.00612 * 15 13 12 29 29 H 1.09000 * 109.46896 * 60.00202 * 15 13 12 30 30 H 1.09009 * 110.30506 * 338.59439 * 18 16 15 31 31 H 1.08992 * 110.31289 * 100.76516 * 18 16 15 32 32 H 1.08999 * 109.91894 * 118.12183 * 19 18 16 33 33 H 1.08994 * 109.92030 * 239.21818 * 19 18 16 34 34 H 1.09004 * 109.46640 * 59.87350 * 21 20 19 35 35 H 1.08999 * 109.47341 * 179.87414 * 21 20 19 36 36 H 1.08999 * 109.46846 * 299.88000 * 21 20 19 37 37 H 1.09005 * 110.66785 * 202.35997 * 22 20 19 38 38 H 1.09000 * 110.66940 * 79.23304 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5798 -1.6364 -1.1337 6 6 1.7931 -0.1783 -2.4797 7 7 2.1414 -0.8472 -3.5571 8 14 0.9743 1.4929 -2.6419 9 1 -0.4989 1.3180 -2.7074 10 1 1.3215 2.3304 -1.4659 11 1 1.4493 2.1587 -3.8813 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8581 1.1584 2.4117 15 6 2.6487 -0.7289 3.5878 16 6 2.6996 0.2541 4.7592 17 1 3.2509 1.1530 4.4828 18 6 3.3280 -0.4115 6.0049 19 6 2.4964 0.0990 7.1962 20 7 1.4791 1.0236 6.6507 21 6 0.2273 0.9395 7.4149 22 6 1.2702 0.6089 5.2397 23 1 -0.3634 0.4339 0.9315 24 1 -0.3633 0.5898 -0.8416 25 1 -0.3634 -1.0237 -0.0900 26 1 2.6312 -1.6803 -3.4735 27 1 2.2489 -1.6318 1.1526 28 1 1.9758 -1.5507 3.8325 29 1 3.6478 -1.1214 3.3987 30 1 3.2562 -1.4967 5.9308 31 1 4.3690 -0.1069 6.1121 32 1 2.0078 -0.7386 7.6941 33 1 3.1406 0.6248 7.9007 34 1 0.4186 1.2019 8.4554 35 1 -0.5025 1.6311 6.9940 36 1 -0.1628 -0.0769 7.3624 37 1 0.8603 1.4315 4.6536 38 1 0.6190 -0.2637 5.1876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260049134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:06 Heat of formation + Delta-G solvation = -70.421413 kcal Electronic energy + Delta-G solvation = -17537.993979 eV Core-core repulsion = 14799.719019 eV Total energy + Delta-G solvation = -2738.274960 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94385 -39.54330 -36.83537 -34.47401 -34.30032 -31.84826 -30.55123 -28.20924 -26.88130 -25.85591 -22.97001 -21.99480 -21.29744 -20.92955 -19.75978 -17.98917 -17.24623 -16.76545 -16.29224 -16.17668 -15.52601 -15.11064 -14.77195 -14.61197 -14.59898 -14.26893 -13.91305 -13.64107 -13.43772 -13.06211 -13.01700 -12.48566 -12.39630 -12.25229 -12.14851 -11.97460 -11.76242 -11.68422 -11.43667 -10.96766 -10.72065 -10.65528 -9.87292 -9.39060 -8.79362 -6.48748 1.40124 1.50364 1.67798 1.82142 2.38746 2.50981 3.02618 3.09474 3.64773 3.71206 3.94750 4.07177 4.27009 4.40871 4.46954 4.48271 4.54007 4.56892 4.66076 4.66402 4.74731 4.79114 4.87312 4.95227 4.98900 5.04506 5.06431 5.27885 5.37270 5.41414 5.63703 5.66145 5.91949 5.98744 6.10706 6.50311 6.88730 7.27077 7.49712 8.60062 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046581 B = 0.004992 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.962154 B = 5608.088840 C = 5922.973040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.236 3.764 3 H 0.023 0.977 4 C -0.603 4.603 5 H 0.042 0.958 6 C -0.011 4.011 7 N -0.936 5.936 8 Si 1.082 2.918 9 H -0.258 1.258 10 H -0.269 1.269 11 H -0.286 1.286 12 N -0.707 5.707 13 C 0.496 3.504 14 O -0.591 6.591 15 C -0.121 4.121 16 C -0.074 4.074 17 H 0.065 0.935 18 C -0.120 4.120 19 C 0.034 3.966 20 N -0.545 5.545 21 C 0.016 3.984 22 C 0.046 3.954 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.258 0.742 27 H 0.404 0.596 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.059 0.941 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 -1.748 21.429 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.131 3.869 3 H 0.040 0.960 4 C -0.642 4.642 5 H 0.060 0.940 6 C -0.210 4.210 7 N -0.572 5.572 8 Si 0.906 3.094 9 H -0.183 1.183 10 H -0.194 1.194 11 H -0.213 1.213 12 N -0.356 5.356 13 C 0.284 3.716 14 O -0.472 6.472 15 C -0.161 4.161 16 C -0.094 4.094 17 H 0.083 0.917 18 C -0.158 4.158 19 C -0.094 4.094 20 N -0.269 5.269 21 C -0.132 4.132 22 C -0.082 4.082 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.239 0.761 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.345 0.684 20.407 20.463 hybrid contribution 0.475 -2.445 0.433 2.528 sum -0.870 -1.762 20.840 20.933 Atomic orbital electron populations 1.22266 0.97738 1.01258 0.99640 1.18858 0.91395 0.93312 0.83301 0.95962 1.22367 1.39475 1.09760 0.92567 0.93975 1.26845 0.96596 1.05845 0.91734 1.70929 1.38108 1.16981 1.31167 0.83506 0.77214 0.72475 0.76218 1.18318 1.19387 1.21273 1.46164 1.65681 1.14257 1.09531 1.21477 0.77273 0.87289 0.85578 1.90635 1.52663 1.18046 1.85864 1.21742 1.04609 0.99128 0.90592 1.21735 0.96003 0.97842 0.93782 0.91662 1.22489 1.00098 1.01107 0.92134 1.22936 0.94304 0.94667 0.97461 1.64684 1.09744 1.50164 1.02353 1.22538 0.91227 1.00310 0.99151 1.23184 0.96871 0.98918 0.89210 0.93778 0.93515 0.92481 0.93304 0.76136 0.86730 0.86547 0.89202 0.89848 0.92549 0.89805 0.90044 0.91897 0.94810 0.92255 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.59 9.07 71.98 0.65 -5.93 16 2 C 0.24 11.32 2.14 44.24 0.09 11.42 16 3 H 0.02 1.20 6.08 -2.39 -0.01 1.18 16 4 C -0.60 -33.00 9.10 25.60 0.23 -32.77 16 5 H 0.04 2.41 7.95 -2.91 -0.02 2.39 16 6 C -0.01 -0.60 5.43 84.66 0.46 -0.14 16 7 N -0.94 -57.08 13.70 21.45 0.29 -56.79 16 8 Si 1.08 51.46 25.29 68.60 1.73 53.19 16 9 H -0.26 -11.23 6.81 99.48 0.68 -10.55 16 10 H -0.27 -12.45 6.36 99.48 0.63 -11.82 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 N -0.71 -27.54 5.07 -446.08 -2.26 -29.80 16 13 C 0.50 17.82 7.63 87.66 0.67 18.49 16 14 O -0.59 -26.09 14.51 -3.05 -0.04 -26.13 16 15 C -0.12 -2.84 5.08 29.85 0.15 -2.69 16 16 C -0.07 -1.79 2.62 -9.59 -0.03 -1.82 16 17 H 0.06 1.95 7.88 -2.38 -0.02 1.93 16 18 C -0.12 -2.02 6.51 31.47 0.20 -1.81 16 19 C 0.03 0.59 6.70 86.45 0.58 1.17 16 20 N -0.55 -12.58 5.55 -909.16 -5.05 -17.63 16 21 C 0.02 0.30 9.40 127.69 1.20 1.50 16 22 C 0.05 1.21 5.46 86.65 0.47 1.68 16 23 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 24 H 0.05 2.05 4.40 -2.39 -0.01 2.04 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.26 15.70 8.72 -92.71 -0.81 14.89 16 27 H 0.40 13.67 8.53 -92.71 -0.79 12.87 16 28 H 0.11 2.12 7.99 -2.39 -0.02 2.10 16 29 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.09 1.15 7.85 -2.38 -0.02 1.13 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 0.83 7.73 -2.39 -0.02 0.81 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.23 8.14 -2.38 -0.02 1.22 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.03 0.57 8.00 -2.39 -0.02 0.55 16 37 H 0.06 1.96 7.41 -2.38 -0.02 1.94 16 38 H 0.05 1.13 7.76 -2.39 -0.02 1.11 16 Total: -1.00 -68.43 300.81 -0.53 -68.96 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.10 Total: 19.12 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.69 Total: -10.91 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -7.02 Total: -104.22 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.04 Total: -26.13 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 1.73 Total: 53.19 kcal Total: -68.43 -0.53 -68.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.465 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds