Wall clock time and date at job start Mon Mar 30 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47030 * 119.99958 * 2 1 3 5 5 H 1.07999 * 120.00803 * 119.99828 * 4 2 1 6 6 C 1.37881 * 119.99889 * 299.99649 * 4 2 1 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 N 1.46503 * 109.46794 * 239.99336 * 2 1 3 13 13 C 1.34777 * 119.99468 * 85.00683 * 12 2 1 14 14 O 1.21270 * 120.00304 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99491 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.50881 * 60.07130 * 15 13 12 17 17 C 1.53117 * 109.50261 * 180.19453 * 15 13 12 18 18 C 1.53120 * 109.16125 * 177.59572 * 17 15 13 19 19 C 1.53039 * 109.27869 * 302.34418 * 18 17 15 20 20 N 1.46839 * 109.52250 * 59.17891 * 19 18 17 21 21 C 1.46907 * 111.00201 * 174.16134 * 20 19 18 22 22 C 1.46845 * 111.19948 * 298.25773 * 20 19 18 23 23 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47140 * 300.00483 * 1 2 3 25 25 H 1.09002 * 109.47215 * 60.00272 * 1 2 3 26 26 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 27 27 H 0.96999 * 120.00317 * 265.00036 * 12 2 1 28 28 H 1.09004 * 109.52190 * 297.49555 * 17 15 13 29 29 H 1.09003 * 109.52744 * 57.68788 * 17 15 13 30 30 H 1.09004 * 109.50435 * 182.40496 * 18 17 15 31 31 H 1.08994 * 109.53791 * 62.30481 * 18 17 15 32 32 H 1.09008 * 109.45956 * 299.16516 * 19 18 17 33 33 H 1.08999 * 109.46362 * 179.20325 * 19 18 17 34 34 H 1.08998 * 109.47088 * 184.20910 * 21 20 19 35 35 H 1.09002 * 109.47114 * 304.21522 * 21 20 19 36 36 H 1.09011 * 109.46529 * 64.20842 * 21 20 19 37 37 H 1.08995 * 109.46409 * 301.72840 * 22 20 19 38 38 H 1.09001 * 109.45466 * 181.75338 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8728 2.6998 10 1 0.8471 2.1766 1.4919 11 1 0.9759 1.9953 3.9067 12 7 2.0183 -0.6908 -1.1961 13 6 2.1470 -0.0184 -2.3571 14 8 1.8583 1.1581 -2.4117 15 6 2.6498 -0.7288 -3.5874 16 1 1.9773 -1.5505 -3.8337 17 6 2.7062 0.2555 -4.7589 18 6 3.2744 -0.4586 -5.9884 19 6 4.6594 -1.0169 -5.6534 20 7 4.5518 -1.9534 -4.5275 21 6 5.8379 -2.6138 -4.2672 22 6 4.0530 -1.2793 -3.3220 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.9034 -0.5277 4.4376 27 1 2.2490 -1.6319 -1.1525 28 1 1.7019 0.6171 -4.9794 29 1 3.3481 1.0968 -4.4973 30 1 3.3570 0.2482 -6.8140 31 1 2.6120 -1.2758 -6.2738 32 1 5.3253 -0.1977 -5.3821 33 1 5.0607 -1.5383 -6.5224 34 1 5.7124 -3.3556 -3.4785 35 1 6.1847 -3.1051 -5.1764 36 1 6.5711 -1.8705 -3.9536 37 1 4.7216 -0.4589 -3.0616 38 1 4.0138 -1.9914 -2.4977 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260128084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:20 Heat of formation + Delta-G solvation = -66.190887 kcal Electronic energy + Delta-G solvation = -17853.507919 eV Core-core repulsion = 15115.416408 eV Total energy + Delta-G solvation = -2738.091510 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21375 -39.25683 -36.87865 -34.47132 -34.38661 -32.66536 -31.00650 -27.63816 -27.24310 -25.34487 -23.81895 -22.76379 -21.32218 -20.64491 -19.09734 -17.85166 -17.32288 -16.77375 -16.44719 -15.91847 -15.69598 -15.28207 -15.09326 -14.76755 -14.46617 -14.30923 -14.12484 -13.74679 -13.46846 -13.17882 -13.15434 -12.80350 -12.56846 -12.39946 -12.15270 -11.75877 -11.66456 -11.62685 -11.38889 -11.27607 -10.88531 -10.64303 -9.88798 -9.35826 -8.39188 -6.44936 1.26142 1.34325 1.43794 1.70294 2.25086 2.41716 2.96667 2.97765 3.68732 3.77918 3.91006 4.14322 4.22951 4.32988 4.44643 4.52665 4.54071 4.57310 4.60320 4.69891 4.70159 4.78924 4.91409 4.96098 5.01152 5.05232 5.12284 5.21241 5.31171 5.41721 5.42916 5.63978 5.99835 6.11428 6.13008 6.56492 6.85518 7.18101 7.42810 8.76026 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.005937 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.265790 B = 4715.314715 C = 5260.826847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.020 0.980 4 C -0.532 4.532 5 H 0.057 0.943 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.938 3.062 9 H -0.259 1.259 10 H -0.265 1.265 11 H -0.292 1.292 12 N -0.699 5.699 13 C 0.507 3.493 14 O -0.594 6.594 15 C -0.092 4.092 16 H 0.120 0.880 17 C -0.099 4.099 18 C -0.108 4.108 19 C 0.049 3.951 20 N -0.544 5.544 21 C 0.023 3.977 22 C 0.070 3.930 23 H 0.066 0.934 24 H 0.040 0.960 25 H 0.045 0.955 26 H 0.270 0.730 27 H 0.407 0.593 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.026 0.974 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 -2.854 -18.620 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 H 0.038 0.962 4 C -0.571 4.571 5 H 0.076 0.924 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.184 1.184 10 H -0.190 1.190 11 H -0.219 1.219 12 N -0.348 5.348 13 C 0.294 3.706 14 O -0.475 6.475 15 C -0.114 4.114 16 H 0.138 0.862 17 C -0.137 4.137 18 C -0.146 4.146 19 C -0.078 4.078 20 N -0.269 5.269 21 C -0.125 4.125 22 C -0.058 4.058 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.242 0.758 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.929 -2.409 -18.572 18.955 hybrid contribution 0.296 0.945 1.189 1.548 sum 3.225 -1.464 -17.383 17.740 Atomic orbital electron populations 1.22337 0.97789 1.01745 0.99400 1.18769 0.91275 0.93085 0.83379 0.96222 1.21249 1.32361 1.13562 0.89880 0.92438 1.25546 0.96828 0.99286 0.95357 1.69973 1.46646 1.41918 0.98643 0.86012 0.79896 0.80383 0.77115 1.18422 1.18974 1.21908 1.46091 1.65167 1.14350 1.09176 1.21232 0.77113 0.86944 0.85359 1.90615 1.53086 1.18000 1.85809 1.21330 0.98399 0.99602 0.92052 0.86173 1.21377 1.01772 0.96683 0.93897 1.21587 0.96100 1.00320 0.96550 1.22251 0.97248 0.94179 0.94146 1.61962 1.28584 1.31151 1.05152 1.22441 0.88472 0.98425 1.03167 1.21918 0.93409 0.97043 0.93477 0.91514 0.94116 0.93604 0.92033 0.75787 0.91632 0.93397 0.89402 0.90140 0.95541 0.88462 0.90960 0.89349 0.95967 0.95989 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.81 8.96 71.98 0.65 -6.16 16 2 C 0.24 11.55 2.15 44.24 0.10 11.64 16 3 H 0.02 1.07 6.64 -2.39 -0.02 1.05 16 4 C -0.53 -29.18 9.31 25.60 0.24 -28.95 16 5 H 0.06 3.34 7.98 -2.91 -0.02 3.31 16 6 C 0.03 1.68 5.45 84.65 0.46 2.14 16 7 N -0.93 -56.03 13.96 21.45 0.30 -55.73 16 8 Si 0.94 45.10 24.37 68.60 1.67 46.77 16 9 H -0.26 -11.64 6.87 99.48 0.68 -10.96 16 10 H -0.26 -12.75 6.53 99.48 0.65 -12.10 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 12 N -0.70 -27.75 4.97 -446.11 -2.22 -29.97 16 13 C 0.51 19.07 7.12 87.66 0.62 19.70 16 14 O -0.59 -27.07 15.64 -3.00 -0.05 -27.12 16 15 C -0.09 -2.53 2.69 -11.49 -0.03 -2.56 16 16 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 17 C -0.10 -2.50 4.58 30.67 0.14 -2.36 16 18 C -0.11 -1.93 6.09 30.65 0.19 -1.74 16 19 C 0.05 0.89 5.46 86.33 0.47 1.36 16 20 N -0.54 -11.35 4.91 -922.56 -4.53 -15.88 16 21 C 0.02 0.39 9.59 127.69 1.22 1.62 16 22 C 0.07 1.80 4.64 86.33 0.40 2.20 16 23 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 24 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.41 14.20 7.97 -92.71 -0.74 13.46 16 28 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.05 1.38 8.05 -2.39 -0.02 1.36 16 30 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.10 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 36 H 0.02 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 2.11 7.57 -2.39 -0.02 2.09 16 Total: -1.00 -66.57 297.79 -0.15 -66.72 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.21 Total: 18.32 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 4.46 Total: -3.12 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -6.45 Total: -101.57 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.67 Total: 46.77 kcal Total: -66.57 -0.15 -66.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260128084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.526 kcal (2) G-P(sol) polarization free energy of solvation -66.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds