Wall clock time and date at job start Mon Mar 30 2020 04:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21277 * 119.99998 * 2 1 4 4 N 1.34778 * 119.99746 * 179.97438 * 2 1 3 5 5 C 1.47607 * 118.63690 * 175.76600 * 4 2 1 6 6 C 1.53952 * 112.13768 * 137.87305 * 5 4 2 7 7 C 1.50822 * 110.09865 * 319.40443 * 6 5 4 8 8 C 1.52568 * 109.35317 * 91.90283 * 7 6 5 9 9 H 1.08997 * 108.51800 * 36.24089 * 8 7 6 10 10 N 1.46506 * 108.51026 * 153.73423 * 8 7 6 11 11 C 1.46503 * 120.00064 * 64.76380 * 10 8 7 12 12 C 1.36931 * 119.99764 * 244.75790 * 10 8 7 13 13 H 1.07998 * 120.00037 * 24.94473 * 12 10 8 14 14 C 1.38820 * 119.99991 * 204.93151 * 12 10 8 15 15 N 1.31615 * 120.00005 * 5.38923 * 14 12 10 16 16 Si 1.86799 * 119.99944 * 185.38530 * 14 12 10 17 17 H 1.48495 * 109.47224 * 90.00084 * 16 14 12 18 18 H 1.48496 * 109.47250 * 210.00218 * 16 14 12 19 19 H 1.48507 * 109.47291 * 330.00044 * 16 14 12 20 20 C 1.47098 * 114.32483 * 274.98104 * 8 7 6 21 21 C 1.44568 * 118.64684 * 355.74754 * 4 2 1 22 22 H 1.09003 * 109.47347 * 185.50854 * 1 2 3 23 23 H 1.09003 * 109.47080 * 305.50654 * 1 2 3 24 24 H 1.09002 * 109.47384 * 65.50282 * 1 2 3 25 25 H 1.09001 * 108.94892 * 258.54996 * 5 4 2 26 26 H 1.08997 * 108.95263 * 17.18881 * 5 4 2 27 27 H 1.09004 * 109.37091 * 79.62537 * 6 5 4 28 28 H 1.09007 * 109.36576 * 199.23968 * 6 5 4 29 29 H 1.08997 * 109.49609 * 331.93481 * 7 6 5 30 30 H 1.09000 * 109.48846 * 211.86184 * 7 6 5 31 31 H 1.09001 * 109.47228 * 95.00906 * 11 10 8 32 32 H 1.09001 * 109.46865 * 215.01022 * 11 10 8 33 33 H 1.09001 * 109.47176 * 335.01206 * 11 10 8 34 34 H 0.96994 * 120.00139 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.33020 * 302.54875 * 20 8 7 36 36 H 1.08992 * 109.18860 * 182.97674 * 20 8 7 37 37 H 1.09002 * 109.45472 * 30.76129 * 21 4 2 38 38 H 1.08999 * 109.45306 * 150.69149 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6534 -1.1340 -0.0951 6 6 4.3197 -2.1418 0.8591 7 6 3.6033 -2.1505 2.1863 8 6 2.5164 -3.2211 2.1672 9 1 2.8808 -4.0741 1.5949 10 7 2.2720 -3.6603 3.5433 11 6 1.7238 -2.7217 4.5255 12 6 2.5559 -4.9483 3.9114 13 1 3.2984 -5.5140 3.3682 14 6 1.8896 -5.5269 4.9830 15 7 0.9116 -4.8774 5.5780 16 14 2.3808 -7.2272 5.5805 17 1 3.4314 -7.1014 6.6224 18 1 1.1946 -7.9123 6.1538 19 1 2.9070 -8.0197 4.4401 20 6 1.2403 -2.7786 1.5846 21 6 1.4316 -2.4000 0.0952 22 1 -0.3634 -1.0229 0.0987 23 1 -0.3633 0.5969 0.8366 24 1 -0.3634 0.4261 -0.9352 25 1 3.9470 -1.3682 -1.1184 26 1 4.0016 -0.1308 0.1504 27 1 4.2782 -3.1382 0.4190 28 1 5.3613 -1.8598 1.0128 29 1 3.1498 -1.1749 2.3613 30 1 4.3151 -2.3691 2.9823 31 1 0.6409 -2.8364 4.5726 32 1 2.1542 -2.9285 5.5053 33 1 1.9684 -1.7016 4.2291 34 1 0.4457 -5.2818 6.3265 35 1 0.8749 -1.9106 2.1334 36 1 0.5124 -3.5863 1.6610 37 1 0.4565 -2.2691 -0.3741 38 1 1.9755 -3.1954 -0.4144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260152959.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:26 Heat of formation + Delta-G solvation = -27.184996 kcal Electronic energy + Delta-G solvation = -18451.764211 eV Core-core repulsion = 15715.364123 eV Total energy + Delta-G solvation = -2736.400088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34338 -39.13895 -36.84272 -34.59736 -33.82345 -31.62964 -30.49239 -28.02084 -27.41191 -26.20385 -24.07553 -22.54096 -20.71273 -19.67833 -18.85171 -18.12831 -17.31165 -16.80591 -16.52521 -15.63655 -15.45094 -15.39999 -14.70298 -14.57961 -14.43252 -13.88166 -13.48098 -13.32260 -13.11020 -13.01239 -12.79348 -12.71538 -12.50687 -12.34296 -12.17627 -12.09256 -11.76368 -11.70685 -11.41216 -11.25602 -10.76744 -10.60595 -9.60716 -8.70495 -7.78349 -5.28461 1.47381 1.48246 1.56872 1.62606 2.15587 2.52122 3.35403 3.61199 3.66291 3.92731 4.06691 4.11495 4.23389 4.37312 4.43949 4.52693 4.66343 4.68237 4.73073 4.78876 4.83570 4.88165 4.99595 5.08351 5.17300 5.26940 5.27590 5.34446 5.52016 5.58487 5.67546 5.72009 5.81257 6.38318 6.46035 7.19610 7.20234 7.92621 8.38120 9.24520 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038674 B = 0.006487 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.828700 B = 4315.436333 C = 4585.471351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.501 3.499 3 O -0.602 6.602 4 N -0.600 5.600 5 C 0.113 3.887 6 C -0.118 4.118 7 C -0.115 4.115 8 C 0.174 3.826 9 H 0.057 0.943 10 N -0.619 5.619 11 C 0.189 3.811 12 C -0.257 4.257 13 H 0.071 0.929 14 C -0.054 4.054 15 N -0.942 5.942 16 Si 0.967 3.033 17 H -0.291 1.291 18 H -0.296 1.296 19 H -0.266 1.266 20 C -0.133 4.133 21 C 0.114 3.886 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.004 0.996 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.246 0.754 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 4.581 -13.571 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.291 3.709 3 O -0.484 6.484 4 N -0.331 5.331 5 C -0.009 4.009 6 C -0.156 4.156 7 C -0.154 4.154 8 C 0.068 3.932 9 H 0.075 0.925 10 N -0.342 5.342 11 C 0.044 3.956 12 C -0.388 4.388 13 H 0.088 0.912 14 C -0.249 4.249 15 N -0.589 5.589 16 Si 0.796 3.204 17 H -0.218 1.218 18 H -0.222 1.222 19 H -0.191 1.191 20 C -0.173 4.173 21 C -0.010 4.010 22 H 0.120 0.880 23 H 0.110 0.890 24 H 0.130 0.870 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.052 5.019 -13.450 14.394 hybrid contribution 0.097 -0.846 1.206 1.476 sum 1.149 4.174 -12.244 12.987 Atomic orbital electron populations 1.22074 0.89313 1.06233 1.05910 1.21536 0.92197 0.82889 0.74229 1.90643 1.71904 1.32944 1.52958 1.47885 1.07191 1.06691 1.71332 1.21853 0.78799 1.00315 0.99957 1.21642 0.99694 1.00062 0.94250 1.21438 0.97984 0.98534 0.97465 1.19565 0.93701 0.95244 0.84652 0.92488 1.44344 1.75551 1.08378 1.05973 1.20337 0.95808 0.88332 0.91119 1.19577 1.15397 0.90208 1.13574 0.91160 1.25842 0.96969 1.01366 1.00718 1.70222 1.24979 1.38767 1.24959 0.85260 0.76544 0.80353 0.78247 1.21784 1.22232 1.19053 1.21649 0.98654 1.00625 0.96349 1.21811 0.98124 0.85865 0.95187 0.88004 0.89011 0.87000 0.89769 0.91372 0.90398 0.89719 0.94362 0.93806 0.97792 0.97204 0.97046 0.94496 0.93748 0.91873 0.86897 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 9.95 71.24 0.71 -2.72 16 2 C 0.50 13.95 7.72 87.66 0.68 14.62 16 3 O -0.60 -21.78 16.37 -3.02 -0.05 -21.83 16 4 N -0.60 -15.07 2.24 -818.18 -1.83 -16.90 16 5 C 0.11 2.74 6.13 86.49 0.53 3.27 16 6 C -0.12 -2.97 5.71 30.21 0.17 -2.80 16 7 C -0.11 -3.92 4.37 29.74 0.13 -3.79 16 8 C 0.17 6.58 2.01 43.01 0.09 6.66 16 9 H 0.06 2.13 7.03 -2.39 -0.02 2.12 16 10 N -0.62 -30.53 2.64 -713.96 -1.88 -32.41 16 11 C 0.19 9.66 7.89 127.77 1.01 10.67 16 12 C -0.26 -13.91 9.56 84.04 0.80 -13.11 16 13 H 0.07 3.66 7.80 -2.91 -0.02 3.64 16 14 C -0.05 -3.03 5.24 84.86 0.44 -2.59 16 15 N -0.94 -55.79 10.44 21.65 0.23 -55.57 16 16 Si 0.97 44.79 29.56 68.60 2.03 46.82 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 C -0.13 -4.27 4.85 29.40 0.14 -4.13 16 21 C 0.11 2.51 5.06 87.38 0.44 2.95 16 22 H 0.10 1.63 5.28 -2.39 -0.01 1.62 16 23 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.93 6.92 -2.39 -0.02 1.91 16 27 H 0.08 1.80 7.32 -2.39 -0.02 1.79 16 28 H 0.08 1.90 8.14 -2.38 -0.02 1.89 16 29 H 0.04 1.40 7.20 -2.39 -0.02 1.39 16 30 H 0.04 1.69 8.05 -2.39 -0.02 1.67 16 31 H 0.00 0.21 7.35 -2.39 -0.02 0.19 16 32 H 0.01 0.52 7.25 -2.39 -0.02 0.50 16 33 H 0.01 0.52 7.22 -2.39 -0.02 0.50 16 34 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.04 1.55 7.59 -2.39 -0.02 1.54 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.11 1.83 5.69 -2.39 -0.01 1.82 16 38 H 0.10 1.85 8.07 -2.39 -0.02 1.83 16 Total: -1.00 -69.04 292.84 4.66 -64.38 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.03 Total: 6.46 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 5.15 Total: 9.04 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -3.49 Total: -104.87 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.04 4.66 -64.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260152959.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.194 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds