Wall clock time and date at job start Mon Mar 30 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21282 * 119.99710 * 2 1 4 4 N 1.34779 * 120.00589 * 180.02562 * 2 1 3 5 5 C 1.47600 * 118.64372 * 174.54844 * 4 2 1 6 6 C 1.53954 * 112.13202 * 222.15933 * 5 4 2 7 7 C 1.50877 * 110.12461 * 40.50849 * 6 5 4 8 8 C 1.52567 * 109.37830 * 268.15345 * 7 6 5 9 9 H 1.08994 * 108.51202 * 323.75025 * 8 7 6 10 10 C 1.52995 * 108.51340 * 206.25528 * 8 7 6 11 11 N 1.46496 * 109.47410 * 175.00066 * 10 8 7 12 12 C 1.36939 * 120.00600 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99635 * 0.02562 * 12 11 10 14 14 C 1.38806 * 120.00276 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00068 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99964 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47064 * 60.00554 * 16 14 12 18 18 H 1.48503 * 109.47141 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47071 * 300.00471 * 16 14 12 20 20 C 1.47096 * 114.32762 * 85.00198 * 8 7 6 21 21 C 1.44577 * 118.63876 * 354.52689 * 4 2 1 22 22 H 1.09007 * 109.46982 * 184.85651 * 1 2 3 23 23 H 1.09003 * 109.47728 * 304.84845 * 1 2 3 24 24 H 1.08995 * 109.47688 * 64.85727 * 1 2 3 25 25 H 1.08997 * 108.95298 * 342.81680 * 5 4 2 26 26 H 1.09000 * 108.94382 * 101.53848 * 5 4 2 27 27 H 1.09002 * 109.33239 * 280.32301 * 6 5 4 28 28 H 1.08998 * 109.37527 * 160.72434 * 6 5 4 29 29 H 1.08997 * 109.49359 * 148.17163 * 7 6 5 30 30 H 1.09008 * 109.48947 * 28.12502 * 7 6 5 31 31 H 1.09002 * 109.47257 * 294.99445 * 10 8 7 32 32 H 1.08998 * 109.47473 * 54.99868 * 10 8 7 33 33 H 0.97001 * 119.99770 * 359.97438 * 11 10 8 34 34 H 0.97005 * 119.99623 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.32890 * 57.45701 * 20 8 7 36 36 H 1.08993 * 109.33058 * 177.10822 * 20 8 7 37 37 H 1.08999 * 109.45297 * 329.23967 * 21 4 2 38 38 H 1.09000 * 109.44703 * 209.31239 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6515 -1.1349 -0.1236 6 6 4.1777 -2.2231 -1.0771 7 6 3.2744 -2.3402 -2.2800 8 6 2.2089 -3.3987 -2.0117 9 1 2.6586 -4.2025 -1.4288 10 6 1.7491 -3.9758 -3.3520 11 7 0.8130 -5.0772 -3.1141 12 6 0.2649 -5.7509 -4.1728 13 1 0.5231 -5.4705 -5.1833 14 6 -0.6217 -6.7949 -3.9473 15 7 -0.9360 -7.1370 -2.7158 16 14 -1.3687 -7.7143 -5.3917 17 1 -0.2859 -8.3314 -6.1991 18 1 -2.2765 -8.7756 -4.8868 19 1 -2.1380 -6.7665 -6.2373 20 6 1.0289 -2.9009 -1.2881 21 6 1.4337 -2.3989 0.1200 22 1 -0.3633 -1.0241 0.0870 23 1 -0.3635 0.5872 0.8434 24 1 -0.3634 0.4366 -0.9302 25 1 3.9538 -0.1580 -0.5007 26 1 4.0924 -1.2856 0.8618 27 1 4.2075 -3.1784 -0.5531 28 1 5.1837 -1.9611 -1.4047 29 1 3.8634 -2.6295 -3.1503 30 1 2.7939 -1.3802 -2.4688 31 1 1.2539 -3.1971 -3.9321 32 1 2.6131 -4.3461 -3.9037 33 1 0.5813 -5.3294 -2.2065 34 1 -1.5559 -7.8663 -2.5583 35 1 0.5816 -2.0802 -1.8489 36 1 0.3019 -3.7065 -1.1860 37 1 0.5369 -2.2229 0.7140 38 1 2.0513 -3.1517 0.6099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260218949.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:18 Heat of formation + Delta-G solvation = -31.534773 kcal Electronic energy + Delta-G solvation = -17937.747839 eV Core-core repulsion = 15201.159130 eV Total energy + Delta-G solvation = -2736.588708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34383 -37.92110 -35.21033 -33.61209 -32.72239 -30.41995 -29.58844 -27.32727 -25.62489 -23.92336 -22.50995 -21.16308 -19.92653 -18.74023 -17.29861 -16.89547 -16.24546 -15.64239 -14.73939 -14.39986 -14.27342 -14.01001 -13.59746 -13.52000 -13.12817 -12.77614 -12.41137 -12.19705 -12.08221 -11.94227 -11.56975 -11.31881 -11.03114 -10.83365 -10.79233 -10.40468 -10.28759 -10.21466 -9.90923 -9.74309 -9.59028 -8.87591 -8.56956 -6.92172 -5.78038 -3.05871 2.62974 3.06973 3.43391 3.47861 3.48754 4.56182 4.59692 4.86786 4.95008 4.96243 5.11037 5.20666 5.22131 5.37515 5.40656 5.54060 5.61740 5.63608 5.71903 5.78653 5.87961 5.98132 6.04630 6.13460 6.28339 6.33141 6.38634 6.44625 6.59691 6.70420 6.89302 6.95047 7.41864 7.69179 8.18833 8.41766 9.52740 10.10869 10.45552 11.44993 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037362 B = 0.005344 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.254041 B = 5237.956091 C = 5592.103614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.510 3.490 3 O -0.559 6.559 4 N -0.602 5.602 5 C 0.113 3.887 6 C -0.130 4.130 7 C -0.108 4.108 8 C -0.093 4.093 9 H 0.066 0.934 10 C 0.154 3.846 11 N -0.732 5.732 12 C -0.239 4.239 13 H 0.068 0.932 14 C -0.014 4.014 15 N -0.936 5.936 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.128 4.128 21 C 0.104 3.896 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.194 10.594 6.897 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.299 3.701 3 O -0.438 6.438 4 N -0.334 5.334 5 C -0.009 4.009 6 C -0.168 4.168 7 C -0.146 4.146 8 C -0.112 4.112 9 H 0.084 0.916 10 C 0.027 3.973 11 N -0.377 5.377 12 C -0.370 4.370 13 H 0.086 0.914 14 C -0.210 4.210 15 N -0.584 5.584 16 Si 0.738 3.262 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.167 4.167 21 C -0.020 4.020 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.482 11.051 6.741 14.477 hybrid contribution -0.562 -0.841 -0.576 1.164 sum 5.920 10.209 6.165 13.315 Atomic orbital electron populations 1.22065 0.91973 1.05136 1.04981 1.20886 0.90754 0.83288 0.75193 1.90668 1.70840 1.31477 1.50816 1.47795 1.07058 1.06549 1.72039 1.21799 0.79162 1.00707 0.99213 1.21773 0.99332 0.99017 0.96699 1.21059 0.96824 0.99386 0.97320 1.20220 0.95446 0.97344 0.98180 0.91553 1.20816 0.92621 0.90442 0.93431 1.42427 1.51872 1.36825 1.06564 1.19198 1.19630 1.10354 0.87823 0.91360 1.24712 1.00472 0.99416 0.96352 1.69640 1.38820 1.31881 1.18107 0.86274 0.78834 0.79412 0.81712 1.21314 1.21681 1.21307 1.21340 0.98797 1.01975 0.94548 1.21812 0.96232 0.85739 0.98182 0.89394 0.89239 0.88706 0.89683 0.92337 0.91382 0.90902 0.91669 0.92073 0.96563 0.96518 0.78250 0.93495 0.91921 0.89095 0.90001 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.69 36.00 0.35 -1.53 16 2 C 0.51 6.91 7.71 -10.99 -0.08 6.83 16 3 O -0.56 -9.56 16.42 5.56 0.09 -9.47 16 4 N -0.60 -7.39 2.24 -172.54 -0.39 -7.77 16 5 C 0.11 1.31 6.07 -2.94 -0.02 1.29 16 6 C -0.13 -1.42 5.71 -27.30 -0.16 -1.58 16 7 C -0.11 -1.41 4.93 -28.02 -0.14 -1.55 16 8 C -0.09 -1.42 1.76 -93.68 -0.16 -1.59 16 9 H 0.07 1.04 7.36 -51.93 -0.38 0.66 16 10 C 0.15 3.05 5.49 -4.05 -0.02 3.03 16 11 N -0.73 -18.02 5.22 -59.91 -0.31 -18.34 16 12 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 13 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 14 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 15 N -0.94 -27.73 13.06 55.49 0.72 -27.00 16 16 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.13 -1.83 4.58 -28.58 -0.13 -1.96 16 21 C 0.10 1.18 4.99 -4.08 -0.02 1.16 16 22 H 0.09 0.81 5.20 -51.92 -0.27 0.55 16 23 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.09 7.02 -51.93 -0.36 0.72 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.74 7.32 -51.93 -0.38 0.36 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.85 7.72 -51.93 -0.40 0.45 16 30 H 0.06 0.85 7.48 -51.92 -0.39 0.46 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.02 0.34 7.95 -51.93 -0.41 -0.07 16 33 H 0.38 9.71 6.42 -40.82 -0.26 9.45 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 36 H 0.09 1.51 6.53 -51.93 -0.34 1.17 16 37 H 0.08 0.80 5.99 -51.93 -0.31 0.49 16 38 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -31.89 296.04 -7.08 -38.97 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.00 Total: 5.10 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.63 Total: -3.15 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.03 Total: -53.11 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.89 -7.08 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218949.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.432 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds