Wall clock time and date at job start Mon Mar 30 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21282 * 119.99710 * 2 1 4 4 N 1.34779 * 120.00589 * 180.02562 * 2 1 3 5 5 C 1.47600 * 118.64372 * 174.54844 * 4 2 1 6 6 C 1.53954 * 112.13202 * 222.15933 * 5 4 2 7 7 C 1.50877 * 110.12461 * 40.50849 * 6 5 4 8 8 C 1.52567 * 109.37830 * 268.15345 * 7 6 5 9 9 H 1.08994 * 108.51202 * 323.75025 * 8 7 6 10 10 C 1.52995 * 108.51340 * 206.25528 * 8 7 6 11 11 N 1.46496 * 109.47410 * 175.00066 * 10 8 7 12 12 C 1.36939 * 120.00600 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99635 * 0.02562 * 12 11 10 14 14 C 1.38806 * 120.00276 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00068 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99964 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47064 * 60.00554 * 16 14 12 18 18 H 1.48503 * 109.47141 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47071 * 300.00471 * 16 14 12 20 20 C 1.47096 * 114.32762 * 85.00198 * 8 7 6 21 21 C 1.44577 * 118.63876 * 354.52689 * 4 2 1 22 22 H 1.09007 * 109.46982 * 184.85651 * 1 2 3 23 23 H 1.09003 * 109.47728 * 304.84845 * 1 2 3 24 24 H 1.08995 * 109.47688 * 64.85727 * 1 2 3 25 25 H 1.08997 * 108.95298 * 342.81680 * 5 4 2 26 26 H 1.09000 * 108.94382 * 101.53848 * 5 4 2 27 27 H 1.09002 * 109.33239 * 280.32301 * 6 5 4 28 28 H 1.08998 * 109.37527 * 160.72434 * 6 5 4 29 29 H 1.08997 * 109.49359 * 148.17163 * 7 6 5 30 30 H 1.09008 * 109.48947 * 28.12502 * 7 6 5 31 31 H 1.09002 * 109.47257 * 294.99445 * 10 8 7 32 32 H 1.08998 * 109.47473 * 54.99868 * 10 8 7 33 33 H 0.97001 * 119.99770 * 359.97438 * 11 10 8 34 34 H 0.97005 * 119.99623 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.32890 * 57.45701 * 20 8 7 36 36 H 1.08993 * 109.33058 * 177.10822 * 20 8 7 37 37 H 1.08999 * 109.45297 * 329.23967 * 21 4 2 38 38 H 1.09000 * 109.44703 * 209.31239 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6515 -1.1349 -0.1236 6 6 4.1777 -2.2231 -1.0771 7 6 3.2744 -2.3402 -2.2800 8 6 2.2089 -3.3987 -2.0117 9 1 2.6586 -4.2025 -1.4288 10 6 1.7491 -3.9758 -3.3520 11 7 0.8130 -5.0772 -3.1141 12 6 0.2649 -5.7509 -4.1728 13 1 0.5231 -5.4705 -5.1833 14 6 -0.6217 -6.7949 -3.9473 15 7 -0.9360 -7.1370 -2.7158 16 14 -1.3687 -7.7143 -5.3917 17 1 -0.2859 -8.3314 -6.1991 18 1 -2.2765 -8.7756 -4.8868 19 1 -2.1380 -6.7665 -6.2373 20 6 1.0289 -2.9009 -1.2881 21 6 1.4337 -2.3989 0.1200 22 1 -0.3633 -1.0241 0.0870 23 1 -0.3635 0.5872 0.8434 24 1 -0.3634 0.4366 -0.9302 25 1 3.9538 -0.1580 -0.5007 26 1 4.0924 -1.2856 0.8618 27 1 4.2075 -3.1784 -0.5531 28 1 5.1837 -1.9611 -1.4047 29 1 3.8634 -2.6295 -3.1503 30 1 2.7939 -1.3802 -2.4688 31 1 1.2539 -3.1971 -3.9321 32 1 2.6131 -4.3461 -3.9037 33 1 0.5813 -5.3294 -2.2065 34 1 -1.5559 -7.8663 -2.5583 35 1 0.5816 -2.0802 -1.8489 36 1 0.3019 -3.7065 -1.1860 37 1 0.5369 -2.2229 0.7140 38 1 2.0513 -3.1517 0.6099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260218949.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:18 Heat of formation + Delta-G solvation = -51.586408 kcal Electronic energy + Delta-G solvation = -17938.617343 eV Core-core repulsion = 15201.159130 eV Total energy + Delta-G solvation = -2737.458213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.40069 -39.14922 -36.71013 -34.98876 -34.05911 -32.23220 -30.51067 -28.67554 -26.88739 -25.47106 -24.03147 -22.32757 -21.16355 -19.75699 -19.19671 -18.06510 -17.31051 -16.73228 -16.55652 -15.71604 -15.56580 -15.41678 -14.78948 -14.75330 -14.63510 -14.09209 -13.67874 -13.25925 -13.13259 -13.03027 -12.96488 -12.79479 -12.64528 -12.38122 -12.16327 -11.98829 -11.76828 -11.50233 -11.34131 -11.23517 -10.91067 -10.78753 -9.60863 -8.96754 -7.94000 -5.21586 1.48458 1.50545 1.56825 1.59091 2.11868 2.57330 3.39391 3.59280 3.80205 3.87312 3.92802 4.07129 4.20198 4.27106 4.37335 4.40544 4.54785 4.61404 4.70910 4.73901 4.75820 4.87099 4.95653 5.02089 5.05493 5.14839 5.17907 5.29638 5.32505 5.45329 5.50995 5.60446 5.70543 6.29220 6.42079 7.16457 7.36139 8.12102 8.37168 9.29077 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037362 B = 0.005344 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.254041 B = 5237.956091 C = 5592.103614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.503 3.497 3 O -0.600 6.600 4 N -0.599 5.599 5 C 0.111 3.889 6 C -0.122 4.122 7 C -0.101 4.101 8 C -0.080 4.080 9 H 0.065 0.935 10 C 0.153 3.847 11 N -0.741 5.741 12 C -0.249 4.249 13 H 0.069 0.931 14 C -0.070 4.070 15 N -0.966 5.966 16 Si 0.970 3.030 17 H -0.280 1.280 18 H -0.293 1.293 19 H -0.280 1.280 20 C -0.123 4.123 21 C 0.111 3.889 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.010 0.990 32 H 0.013 0.987 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 10.694 7.163 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.294 3.706 3 O -0.482 6.482 4 N -0.331 5.331 5 C -0.011 4.011 6 C -0.160 4.160 7 C -0.139 4.139 8 C -0.099 4.099 9 H 0.084 0.916 10 C 0.026 3.974 11 N -0.384 5.384 12 C -0.381 4.381 13 H 0.087 0.913 14 C -0.262 4.262 15 N -0.616 5.616 16 Si 0.799 3.201 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.206 1.206 20 C -0.161 4.161 21 C -0.012 4.012 22 H 0.117 0.883 23 H 0.123 0.877 24 H 0.115 0.885 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.211 0.789 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.885 11.156 6.992 14.858 hybrid contribution -0.640 -0.846 -0.696 1.268 sum 6.246 10.311 6.296 13.600 Atomic orbital electron populations 1.22088 0.89663 1.06203 1.05793 1.21439 0.91975 0.82905 0.74322 1.90649 1.71857 1.32847 1.52831 1.47880 1.07508 1.06486 1.71178 1.21877 0.78865 1.00188 1.00184 1.21716 0.99657 0.99159 0.95439 1.20985 0.96416 0.97871 0.98637 1.20163 0.96336 0.97843 0.95559 0.91617 1.20978 0.91338 0.88967 0.96092 1.42584 1.52508 1.37687 1.05657 1.19568 1.19415 1.10448 0.88684 0.91298 1.25475 1.01386 1.00589 0.98789 1.69781 1.39580 1.32412 1.19874 0.85273 0.77975 0.78034 0.78836 1.20633 1.21918 1.20607 1.21219 0.97700 1.00867 0.96341 1.21790 0.97392 0.85558 0.96421 0.88277 0.87719 0.88450 0.91067 0.90710 0.90677 0.88927 0.91505 0.93001 0.97230 0.96877 0.78912 0.93914 0.92542 0.91513 0.87820 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 9.69 71.23 0.69 -2.69 16 2 C 0.50 13.00 7.71 87.65 0.68 13.68 16 3 O -0.60 -20.21 16.42 -3.04 -0.05 -20.26 16 4 N -0.60 -13.61 2.24 -818.17 -1.83 -15.45 16 5 C 0.11 2.34 6.07 86.49 0.53 2.86 16 6 C -0.12 -2.36 5.71 30.23 0.17 -2.19 16 7 C -0.10 -2.49 4.93 29.76 0.15 -2.34 16 8 C -0.08 -2.37 1.76 -12.77 -0.02 -2.39 16 9 H 0.07 1.97 7.36 -2.39 -0.02 1.96 16 10 C 0.15 6.01 5.49 86.38 0.47 6.49 16 11 N -0.74 -36.65 5.22 -343.47 -1.79 -38.44 16 12 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 13 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 14 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 15 N -0.97 -57.55 13.06 21.65 0.28 -57.26 16 16 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 C -0.12 -3.38 4.58 29.40 0.13 -3.25 16 21 C 0.11 2.31 4.99 87.38 0.44 2.75 16 22 H 0.10 1.62 5.20 -2.38 -0.01 1.61 16 23 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 1.74 7.02 -2.39 -0.02 1.72 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.40 7.32 -2.39 -0.02 1.38 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.64 7.72 -2.39 -0.02 1.62 16 30 H 0.05 1.39 7.48 -2.38 -0.02 1.37 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.01 0.53 7.95 -2.39 -0.02 0.51 16 33 H 0.38 19.34 6.42 -92.71 -0.60 18.74 16 34 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 35 H 0.06 1.62 7.90 -2.39 -0.02 1.60 16 36 H 0.07 2.21 6.53 -2.39 -0.02 2.19 16 37 H 0.10 1.75 5.99 -2.39 -0.01 1.73 16 38 H 0.09 1.73 8.07 -2.39 -0.02 1.72 16 Total: -1.00 -67.86 296.04 3.62 -64.23 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.45 Total: 23.14 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 4.54 Total: -3.57 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -3.34 Total: -111.15 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -67.86 3.62 -64.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218949.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.648 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds