Wall clock time and date at job start Mon Mar 30 2020 04:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99450 * 2 1 4 4 N 1.34766 * 120.00406 * 180.02562 * 2 1 3 5 5 C 1.47604 * 118.64927 * 174.56741 * 4 2 1 6 6 C 1.53946 * 112.14635 * 222.11057 * 5 4 2 7 7 C 1.50881 * 110.09353 * 40.55516 * 6 5 4 8 8 C 1.52566 * 109.36470 * 268.11647 * 7 6 5 9 9 C 1.47100 * 114.32499 * 85.00893 * 8 7 6 10 10 H 1.09002 * 109.32186 * 57.28798 * 9 8 7 11 11 N 1.46894 * 109.33000 * 176.94009 * 9 8 7 12 12 C 1.46902 * 111.00161 * 205.00601 * 11 9 8 13 13 C 1.50695 * 109.46977 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00452 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99908 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99912 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00144 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47211 * 59.99570 * 17 15 13 19 19 H 1.48498 * 109.47156 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47070 * 299.99728 * 17 15 13 21 21 C 1.44587 * 118.64223 * 354.54024 * 4 2 1 22 22 H 1.08998 * 109.46758 * 184.86448 * 1 2 3 23 23 H 1.09000 * 109.47220 * 304.85987 * 1 2 3 24 24 H 1.09001 * 109.47138 * 64.86631 * 1 2 3 25 25 H 1.09000 * 108.94191 * 342.79353 * 5 4 2 26 26 H 1.08996 * 108.95388 * 101.41617 * 5 4 2 27 27 H 1.09000 * 109.37205 * 160.75011 * 6 5 4 28 28 H 1.08999 * 109.36311 * 280.49607 * 6 5 4 29 29 H 1.09011 * 109.48838 * 148.14931 * 7 6 5 30 30 H 1.09001 * 109.49125 * 28.08616 * 7 6 5 31 31 H 1.09004 * 108.51042 * 323.76180 * 8 7 6 32 32 H 1.08996 * 108.51708 * 206.26929 * 8 7 6 33 33 H 1.00903 * 110.99836 * 328.95386 * 11 9 8 34 34 H 1.08998 * 109.46557 * 299.99815 * 12 11 9 35 35 H 1.08997 * 109.47069 * 59.99450 * 12 11 9 36 36 H 0.96997 * 120.00624 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.45066 * 329.26083 * 21 4 2 38 38 H 1.09003 * 109.44686 * 209.33646 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6515 -1.1350 -0.1231 6 6 4.1783 -2.2236 -1.0757 7 6 3.2757 -2.3404 -2.2791 8 6 2.2101 -3.3988 -2.0115 9 6 1.0297 -2.9010 -1.2885 10 1 0.5845 -2.0783 -1.8481 11 7 0.0481 -3.9856 -1.1550 12 6 -1.3112 -3.4497 -1.0024 13 6 -2.2882 -4.5891 -0.8679 14 1 -1.9349 -5.6093 -0.8937 15 6 -3.6332 -4.3291 -0.7119 16 7 -4.0635 -3.0867 -0.6800 17 14 -4.8445 -5.7415 -0.5459 18 1 -4.4957 -6.5551 0.6463 19 1 -6.2184 -5.1997 -0.3915 20 1 -4.7822 -6.5924 -1.7614 21 6 1.4336 -2.3990 0.1197 22 1 -0.3633 -1.0240 0.0871 23 1 -0.3633 0.5874 0.8432 24 1 -0.3633 0.4365 -0.9304 25 1 3.9539 -0.1581 -0.5004 26 1 4.0923 -1.2837 0.8626 27 1 5.1846 -1.9619 -1.4026 28 1 4.2053 -3.1795 -0.5524 29 1 3.8653 -2.6298 -3.1492 30 1 2.7954 -1.3803 -2.4680 31 1 2.6595 -4.2027 -1.4283 32 1 1.8831 -3.8100 -2.9665 33 1 0.1009 -4.6195 -1.9383 34 1 -1.3572 -2.8248 -0.1105 35 1 -1.5668 -2.8527 -1.8778 36 1 -5.0097 -2.9037 -0.5707 37 1 0.5366 -2.2229 0.7133 38 1 2.0510 -3.1516 0.6101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260254971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:33 Heat of formation + Delta-G solvation = -40.488846 kcal Electronic energy + Delta-G solvation = -18136.692817 eV Core-core repulsion = 15399.715831 eV Total energy + Delta-G solvation = -2736.976986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22896 -37.73670 -35.13432 -33.80886 -32.74920 -30.59660 -29.21503 -26.65538 -26.13080 -24.44100 -21.93245 -20.86325 -20.35132 -18.60340 -17.05116 -16.53590 -16.19646 -15.43172 -14.84461 -14.41542 -14.38572 -14.11453 -13.58422 -13.36234 -12.95553 -12.60379 -12.50003 -12.17801 -11.98364 -11.69482 -11.47478 -11.29481 -11.19349 -10.88198 -10.78298 -10.65329 -10.36437 -10.33616 -9.87085 -9.53365 -9.26199 -8.56739 -8.47211 -7.41654 -6.09288 -4.11499 2.81372 3.21211 3.29948 3.34569 3.37144 4.37186 4.58834 4.89226 4.96497 4.99466 5.12667 5.18440 5.26705 5.40556 5.55489 5.62838 5.65270 5.73944 5.79492 5.85359 5.92660 5.98514 6.07105 6.20542 6.22062 6.28836 6.42744 6.50638 6.76223 7.14333 7.32356 7.57060 7.71745 8.04568 8.27778 8.37191 8.50575 8.97152 9.53905 11.01496 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.006197 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.289135 B = 4516.978155 C = 5163.641023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.513 3.487 3 O -0.561 6.561 4 N -0.604 5.604 5 C 0.112 3.888 6 C -0.130 4.130 7 C -0.113 4.113 8 C -0.119 4.119 9 C 0.071 3.929 10 H 0.037 0.963 11 N -0.685 5.685 12 C 0.195 3.805 13 C -0.518 4.518 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.118 3.882 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.333 0.667 34 H 0.029 0.971 35 H -0.013 1.013 36 H 0.263 0.737 37 H 0.090 0.910 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.032 1.381 -0.709 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.302 3.698 3 O -0.441 6.441 4 N -0.337 5.337 5 C -0.010 4.010 6 C -0.168 4.168 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.041 4.041 10 H 0.055 0.945 11 N -0.317 5.317 12 C 0.068 3.932 13 C -0.556 4.556 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.006 4.006 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.151 0.849 34 H 0.047 0.953 35 H 0.005 0.995 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.277 1.938 0.002 13.418 hybrid contribution -1.053 -0.522 -0.839 1.444 sum 12.224 1.416 -0.838 12.335 Atomic orbital electron populations 1.22127 0.91218 1.06203 1.04932 1.21014 0.90945 0.83109 0.74701 1.90641 1.70963 1.31482 1.50970 1.47786 1.06758 1.06830 1.72355 1.21763 0.79609 1.00431 0.99199 1.21771 0.99120 0.99335 0.96566 1.21005 0.96933 0.99845 0.97332 1.20642 0.96109 0.98580 1.00388 1.21029 0.93250 0.94795 0.95024 0.94506 1.60614 1.06991 1.16420 1.47638 1.19623 0.82533 0.95344 0.95668 1.21134 0.91237 0.93248 1.50016 0.91997 1.24973 0.98426 0.95735 0.95284 1.69931 1.15225 1.18263 1.50125 0.86553 0.79901 0.82200 0.78695 1.20147 1.21339 1.20302 1.21680 0.96522 0.84839 0.97557 0.88629 0.89115 0.88821 0.89719 0.92254 0.90959 0.91313 0.91976 0.91871 0.91425 0.92533 0.84892 0.95312 0.99534 0.92782 0.89204 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 9.68 36.00 0.35 -2.54 16 2 C 0.51 8.49 7.71 -10.99 -0.08 8.40 16 3 O -0.56 -10.81 16.42 5.55 0.09 -10.71 16 4 N -0.60 -8.80 2.24 -172.54 -0.39 -9.19 16 5 C 0.11 1.39 6.07 -2.94 -0.02 1.37 16 6 C -0.13 -1.34 5.71 -27.30 -0.16 -1.50 16 7 C -0.11 -1.31 5.51 -28.02 -0.15 -1.47 16 8 C -0.12 -1.58 4.45 -29.79 -0.13 -1.71 16 9 C 0.07 1.13 2.11 -69.57 -0.15 0.99 16 10 H 0.04 0.66 7.55 -51.93 -0.39 0.27 16 11 N -0.68 -13.26 6.29 -109.98 -0.69 -13.95 16 12 C 0.19 4.70 5.18 -4.98 -0.03 4.67 16 13 C -0.52 -13.93 9.32 -34.44 -0.32 -14.25 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 17 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.12 1.77 4.55 -4.08 -0.02 1.76 16 22 H 0.10 1.60 3.99 -51.93 -0.21 1.39 16 23 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.08 1.14 7.02 -51.93 -0.36 0.78 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.69 7.31 -51.93 -0.38 0.31 16 29 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 31 H 0.07 0.86 7.36 -51.93 -0.38 0.48 16 32 H 0.06 0.74 7.93 -51.93 -0.41 0.33 16 33 H 0.33 6.26 8.18 -39.29 -0.32 5.94 16 34 H 0.03 0.73 6.15 -51.93 -0.32 0.41 16 35 H -0.01 -0.34 8.05 -51.93 -0.42 -0.76 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.09 1.48 5.17 -51.93 -0.27 1.22 16 38 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 LS Contribution 295.94 15.07 4.46 4.46 Total: -1.00 -29.72 295.94 -7.55 -37.27 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.93 Total: 3.84 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.81 Total: -2.79 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.34 Total: -48.06 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.72 -7.55 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.220 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds