Wall clock time and date at job start Mon Mar 30 2020 04:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99450 * 2 1 4 4 N 1.34766 * 120.00406 * 180.02562 * 2 1 3 5 5 C 1.47604 * 118.64927 * 174.56741 * 4 2 1 6 6 C 1.53946 * 112.14635 * 222.11057 * 5 4 2 7 7 C 1.50881 * 110.09353 * 40.55516 * 6 5 4 8 8 C 1.52566 * 109.36470 * 268.11647 * 7 6 5 9 9 C 1.47100 * 114.32499 * 85.00893 * 8 7 6 10 10 H 1.09002 * 109.32186 * 57.28798 * 9 8 7 11 11 N 1.46894 * 109.33000 * 176.94009 * 9 8 7 12 12 C 1.46902 * 111.00161 * 205.00601 * 11 9 8 13 13 C 1.50695 * 109.46977 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00452 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99908 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99912 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00144 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47211 * 59.99570 * 17 15 13 19 19 H 1.48498 * 109.47156 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47070 * 299.99728 * 17 15 13 21 21 C 1.44587 * 118.64223 * 354.54024 * 4 2 1 22 22 H 1.08998 * 109.46758 * 184.86448 * 1 2 3 23 23 H 1.09000 * 109.47220 * 304.85987 * 1 2 3 24 24 H 1.09001 * 109.47138 * 64.86631 * 1 2 3 25 25 H 1.09000 * 108.94191 * 342.79353 * 5 4 2 26 26 H 1.08996 * 108.95388 * 101.41617 * 5 4 2 27 27 H 1.09000 * 109.37205 * 160.75011 * 6 5 4 28 28 H 1.08999 * 109.36311 * 280.49607 * 6 5 4 29 29 H 1.09011 * 109.48838 * 148.14931 * 7 6 5 30 30 H 1.09001 * 109.49125 * 28.08616 * 7 6 5 31 31 H 1.09004 * 108.51042 * 323.76180 * 8 7 6 32 32 H 1.08996 * 108.51708 * 206.26929 * 8 7 6 33 33 H 1.00903 * 110.99836 * 328.95386 * 11 9 8 34 34 H 1.08998 * 109.46557 * 299.99815 * 12 11 9 35 35 H 1.08997 * 109.47069 * 59.99450 * 12 11 9 36 36 H 0.96997 * 120.00624 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.45066 * 329.26083 * 21 4 2 38 38 H 1.09003 * 109.44686 * 209.33646 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6515 -1.1350 -0.1231 6 6 4.1783 -2.2236 -1.0757 7 6 3.2757 -2.3404 -2.2791 8 6 2.2101 -3.3988 -2.0115 9 6 1.0297 -2.9010 -1.2885 10 1 0.5845 -2.0783 -1.8481 11 7 0.0481 -3.9856 -1.1550 12 6 -1.3112 -3.4497 -1.0024 13 6 -2.2882 -4.5891 -0.8679 14 1 -1.9349 -5.6093 -0.8937 15 6 -3.6332 -4.3291 -0.7119 16 7 -4.0635 -3.0867 -0.6800 17 14 -4.8445 -5.7415 -0.5459 18 1 -4.4957 -6.5551 0.6463 19 1 -6.2184 -5.1997 -0.3915 20 1 -4.7822 -6.5924 -1.7614 21 6 1.4336 -2.3990 0.1197 22 1 -0.3633 -1.0240 0.0871 23 1 -0.3633 0.5874 0.8432 24 1 -0.3633 0.4365 -0.9304 25 1 3.9539 -0.1581 -0.5004 26 1 4.0923 -1.2837 0.8626 27 1 5.1846 -1.9619 -1.4026 28 1 4.2053 -3.1795 -0.5524 29 1 3.8653 -2.6298 -3.1492 30 1 2.7954 -1.3803 -2.4680 31 1 2.6595 -4.2027 -1.4283 32 1 1.8831 -3.8100 -2.9665 33 1 0.1009 -4.6195 -1.9383 34 1 -1.3572 -2.8248 -0.1105 35 1 -1.5668 -2.8527 -1.8778 36 1 -5.0097 -2.9037 -0.5707 37 1 0.5366 -2.2229 0.7133 38 1 2.0510 -3.1516 0.6101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260254971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:32 Heat of formation + Delta-G solvation = -60.102951 kcal Electronic energy + Delta-G solvation = -18137.543348 eV Core-core repulsion = 15399.715831 eV Total energy + Delta-G solvation = -2737.827518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48710 -39.07330 -36.61887 -35.01616 -34.59717 -32.05814 -30.55991 -28.26977 -27.45759 -25.78863 -23.61323 -22.26125 -21.43988 -19.84281 -18.62967 -18.15012 -17.53190 -16.72640 -16.68124 -15.86089 -15.60769 -15.43996 -14.87629 -14.65562 -14.33525 -14.15014 -13.95150 -13.61689 -13.34332 -13.07495 -12.95501 -12.74325 -12.68975 -12.43390 -12.22016 -11.98715 -11.71400 -11.51618 -11.36639 -11.16482 -10.87153 -10.61043 -9.77666 -9.08193 -8.18647 -6.28537 1.44649 1.46581 1.47774 1.54510 2.01086 2.42938 3.15304 3.35234 3.74549 3.82831 3.89632 4.01096 4.07507 4.29327 4.34427 4.42378 4.48834 4.56891 4.63103 4.73811 4.80569 4.91994 5.02537 5.09875 5.12506 5.21950 5.23259 5.29115 5.37013 5.43568 5.58599 5.68482 6.06783 6.28577 6.48946 6.73926 6.93112 7.06569 7.42146 8.91963 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.006197 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.289135 B = 4516.978155 C = 5163.641023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.510 3.490 3 O -0.590 6.590 4 N -0.597 5.597 5 C 0.106 3.894 6 C -0.122 4.122 7 C -0.108 4.108 8 C -0.116 4.116 9 C 0.076 3.924 10 H 0.014 0.986 11 N -0.679 5.679 12 C 0.212 3.788 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.125 3.875 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.338 0.662 34 H 0.012 0.988 35 H -0.043 1.043 36 H 0.264 0.736 37 H 0.072 0.928 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.391 -0.211 -0.664 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.300 3.700 3 O -0.472 6.472 4 N -0.328 5.328 5 C -0.015 4.015 6 C -0.160 4.160 7 C -0.147 4.147 8 C -0.154 4.154 9 C -0.036 4.036 10 H 0.032 0.968 11 N -0.310 5.310 12 C 0.084 3.916 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.194 1.194 21 C 0.001 3.999 22 H 0.100 0.900 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.030 0.970 35 H -0.026 1.026 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.670 0.315 0.040 14.674 hybrid contribution -1.436 -0.009 -0.867 1.678 sum 13.234 0.306 -0.826 13.263 Atomic orbital electron populations 1.22074 0.91097 1.05437 1.05436 1.21088 0.91135 0.83299 0.74476 1.90623 1.71452 1.32466 1.52686 1.47805 1.07900 1.05936 1.71182 1.22003 0.77845 1.00878 1.00777 1.21767 0.99842 0.99009 0.95356 1.20979 0.96674 0.98008 0.98991 1.20608 0.95268 0.99418 1.00126 1.21062 0.93489 0.93143 0.95879 0.96794 1.60504 1.05201 1.17297 1.48001 1.19248 0.84748 0.94102 0.93505 1.21538 0.92149 0.93977 1.49756 0.91721 1.25853 1.00410 0.98230 0.94880 1.70058 1.15614 1.20327 1.51026 0.85483 0.77318 0.79037 0.79037 1.19347 1.21170 1.19383 1.21567 0.96335 0.85319 0.96677 0.90034 0.87987 0.88858 0.90907 0.90662 0.88344 0.90070 0.89752 0.94102 0.90020 0.92478 0.84345 0.96992 1.02561 0.92746 0.91019 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.85 9.68 71.24 0.69 -5.16 16 2 C 0.51 17.07 7.71 87.66 0.68 17.74 16 3 O -0.59 -22.92 16.42 -3.04 -0.05 -22.97 16 4 N -0.60 -16.97 2.24 -818.19 -1.83 -18.80 16 5 C 0.11 2.42 6.07 86.49 0.52 2.94 16 6 C -0.12 -2.10 5.71 30.22 0.17 -1.93 16 7 C -0.11 -2.25 5.51 29.76 0.16 -2.08 16 8 C -0.12 -2.84 4.45 28.62 0.13 -2.71 16 9 C 0.08 2.40 2.11 43.72 0.09 2.49 16 10 H 0.01 0.52 7.55 -2.39 -0.02 0.50 16 11 N -0.68 -26.16 6.29 -501.86 -3.15 -29.31 16 12 C 0.21 10.47 5.18 85.55 0.44 10.92 16 13 C -0.54 -28.98 9.32 25.60 0.24 -28.75 16 14 H 0.06 3.39 7.81 -2.91 -0.02 3.36 16 15 C 0.00 0.27 5.46 84.66 0.46 0.73 16 16 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 17 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 C 0.13 3.67 4.55 87.37 0.40 4.07 16 22 H 0.08 2.87 3.99 -2.39 -0.01 2.87 16 23 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 24 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 25 H 0.07 1.87 7.02 -2.39 -0.02 1.85 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.26 7.31 -2.39 -0.02 1.24 16 29 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.04 1.04 7.48 -2.39 -0.02 1.03 16 31 H 0.08 1.81 7.36 -2.39 -0.02 1.79 16 32 H 0.06 1.39 7.93 -2.39 -0.02 1.38 16 33 H 0.34 12.49 8.18 -89.69 -0.73 11.75 16 34 H 0.01 0.64 6.15 -2.39 -0.01 0.62 16 35 H -0.04 -2.37 8.05 -2.39 -0.02 -2.39 16 36 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.07 2.40 5.17 -2.39 -0.01 2.39 16 38 H 0.10 2.55 8.07 -2.39 -0.02 2.54 16 Total: -1.00 -63.97 295.94 1.58 -62.39 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.31 Total: 19.37 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 3.99 Total: -1.74 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -4.70 Total: -101.95 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -63.97 1.58 -62.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.287 kcal (2) G-P(sol) polarization free energy of solvation -63.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds