Wall clock time and date at job start Mon Mar 30 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46634 * 2 1 4 4 C 1.52998 * 109.47172 * 120.00412 * 2 1 3 5 5 H 1.09004 * 109.38466 * 53.93223 * 4 2 1 6 6 C 1.50250 * 109.30170 * 294.19185 * 4 2 1 7 7 O 1.21283 * 118.62907 * 42.69786 * 6 4 2 8 8 N 1.33716 * 122.75219 * 222.70087 * 6 4 2 9 9 C 1.46014 * 122.92636 * 1.67988 * 8 6 4 10 10 C 1.52977 * 110.04093 * 341.84527 * 9 8 6 11 11 N 1.46901 * 109.38367 * 173.72403 * 4 2 1 12 12 C 1.46895 * 111.00103 * 293.71842 * 11 4 2 13 13 H 1.08998 * 109.47371 * 59.99896 * 12 11 4 14 14 C 1.53004 * 109.46788 * 299.99775 * 12 11 4 15 15 C 1.50703 * 109.47009 * 180.02562 * 12 11 4 16 16 H 1.08005 * 119.99924 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00032 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99885 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00014 * 179.97438 * 17 15 12 20 20 H 1.48494 * 109.46993 * 90.00282 * 19 17 15 21 21 H 1.48506 * 109.47243 * 210.00334 * 19 17 15 22 22 H 1.48498 * 109.47227 * 330.00353 * 19 17 15 23 23 H 1.09001 * 109.47156 * 308.65322 * 1 2 3 24 24 H 1.09001 * 109.47604 * 68.66302 * 1 2 3 25 25 H 1.09001 * 109.46670 * 188.66024 * 1 2 3 26 26 H 1.09002 * 109.46679 * 240.00294 * 2 1 3 27 27 H 1.08999 * 109.47508 * 300.00195 * 3 2 1 28 28 H 1.09000 * 109.46833 * 60.00692 * 3 2 1 29 29 H 1.09003 * 109.46490 * 179.97438 * 3 2 1 30 30 H 0.97003 * 118.54315 * 181.68676 * 8 6 4 31 31 H 1.09001 * 109.37806 * 221.66863 * 9 8 6 32 32 H 1.09004 * 109.37123 * 102.01848 * 9 8 6 33 33 H 1.08996 * 109.59545 * 290.51585 * 10 9 8 34 34 H 1.09000 * 109.72154 * 170.13621 * 10 9 8 35 35 H 1.09000 * 109.47140 * 60.00581 * 14 12 11 36 36 H 1.09005 * 109.46523 * 180.02562 * 14 12 11 37 37 H 1.09003 * 109.47184 * 299.99699 * 14 12 11 38 38 H 0.97004 * 119.99722 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5899 -1.7126 1.3037 6 6 1.6577 0.0678 2.4692 7 8 0.5430 0.5418 2.5290 8 7 2.4951 0.2695 3.4921 9 6 3.8682 -0.2269 3.5034 10 6 4.0346 -1.3324 2.4592 11 7 3.5012 -0.8528 1.1739 12 6 3.8936 -1.7452 0.0750 13 1 3.5300 -1.3403 -0.8694 14 6 3.2874 -3.1314 0.3027 15 6 5.3959 -1.8557 0.0296 16 1 5.9989 -1.3164 0.7453 17 6 6.0006 -2.6451 -0.9254 18 7 5.2663 -3.3012 -1.7972 19 14 7.8627 -2.7814 -0.9821 20 1 8.3024 -3.9124 -0.1262 21 1 8.2992 -3.0206 -2.3813 22 1 8.4668 -1.5197 -0.4839 23 1 -0.3633 0.6419 0.8025 24 1 -0.3634 0.3739 -0.9572 25 1 -0.3633 -1.0160 0.1547 26 1 1.8933 -0.5138 -0.8901 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 3.1300 1.4425 0.0005 30 1 2.1762 0.7678 4.2608 31 1 4.1009 -0.6246 4.4913 32 1 4.5506 0.5919 3.2752 33 1 3.4851 -2.2192 2.7748 34 1 5.0909 -1.5773 2.3479 35 1 2.2008 -3.0519 0.3358 36 1 3.5790 -3.7938 -0.5125 37 1 3.6511 -3.5364 1.2471 38 1 5.6918 -3.8569 -2.4689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260293377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:54 Heat of formation + Delta-G solvation = -30.553290 kcal Electronic energy + Delta-G solvation = -18868.690868 eV Core-core repulsion = 16132.144719 eV Total energy + Delta-G solvation = -2736.546148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.31092 -37.13457 -35.52110 -33.87218 -32.14022 -29.21390 -28.53916 -26.62031 -25.50587 -24.59369 -23.28180 -20.35957 -20.12407 -17.97569 -16.85549 -16.72178 -15.63493 -15.35235 -14.88722 -14.36839 -13.88256 -13.68960 -13.43665 -12.97361 -12.82789 -12.16919 -12.04325 -11.64032 -11.59506 -11.38090 -11.23920 -10.91068 -10.79546 -10.73247 -10.58307 -10.34127 -10.13274 -10.06150 -10.01590 -8.99392 -8.88248 -8.72761 -8.44605 -7.37679 -6.09185 -4.14026 3.03065 3.25156 3.33088 3.35640 3.64756 4.32624 4.69624 5.00648 5.22802 5.29035 5.40335 5.56049 5.61425 5.67287 5.87830 6.05097 6.19701 6.20676 6.34283 6.41676 6.48477 6.53388 6.58827 6.68920 6.75012 6.89194 6.95092 7.02584 7.10216 7.34013 7.59265 7.64247 7.70048 7.98015 8.23480 8.40688 8.63329 8.90480 9.51291 10.97685 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029759 B = 0.008315 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.657394 B = 3366.710921 C = 3815.663322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.072 4.072 3 C -0.138 4.138 4 C 0.067 3.933 5 H 0.071 0.929 6 C 0.534 3.466 7 O -0.560 6.560 8 N -0.721 5.721 9 C 0.113 3.887 10 C 0.037 3.963 11 N -0.517 5.517 12 C 0.209 3.791 13 H 0.050 0.950 14 C -0.175 4.175 15 C -0.505 4.505 16 H 0.064 0.936 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.896 3.104 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.390 0.610 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.110 0.890 35 H 0.010 0.990 36 H 0.091 0.909 37 H 0.028 0.972 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 4.229 7.168 8.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.091 4.091 3 C -0.195 4.195 4 C -0.045 4.045 5 H 0.088 0.912 6 C 0.322 3.678 7 O -0.439 6.439 8 N -0.373 5.373 9 C -0.011 4.011 10 C -0.091 4.091 11 N -0.242 5.242 12 C 0.103 3.897 13 H 0.067 0.933 14 C -0.235 4.235 15 C -0.544 4.544 16 H 0.082 0.918 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.724 3.276 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.225 0.775 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.128 0.872 35 H 0.029 0.971 36 H 0.109 0.891 37 H 0.047 0.953 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.577 4.699 6.739 8.961 hybrid contribution 0.704 -0.946 0.410 1.249 sum -2.873 3.753 7.150 8.571 Atomic orbital electron populations 1.22090 0.95141 1.02008 1.01913 1.20918 0.95179 0.96684 0.96313 1.21742 1.02243 0.95117 1.00403 1.21813 0.92039 0.97845 0.92791 0.91160 1.20366 0.84082 0.79344 0.84042 1.90600 1.21371 1.51482 1.80403 1.45643 1.13994 1.57355 1.20271 1.21615 0.82195 0.98045 0.99277 1.22419 1.03514 0.93861 0.89344 1.62902 1.05546 1.51307 1.04431 1.19392 0.95527 0.86124 0.88615 0.93271 1.22442 0.95766 1.03126 1.02125 1.21070 0.90451 1.27527 1.15341 0.91776 1.24916 0.98239 0.95524 0.95401 1.69879 1.34934 1.30210 1.17885 0.86530 0.85470 0.78360 0.77243 1.20833 1.21282 1.19819 0.89865 0.93687 0.93727 0.89817 0.93656 0.93484 0.91266 0.77498 0.91301 0.91270 0.95013 0.87236 0.97077 0.89054 0.95282 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.64 37.16 0.32 -2.25 16 2 C -0.07 -1.30 2.60 -90.62 -0.24 -1.54 16 3 C -0.14 -2.40 8.73 37.16 0.32 -2.07 16 4 C 0.07 1.25 1.47 -69.08 -0.10 1.15 16 5 H 0.07 1.39 5.94 -51.93 -0.31 1.08 16 6 C 0.53 9.50 6.10 -11.68 -0.07 9.43 16 7 O -0.56 -10.90 13.87 5.55 0.08 -10.82 16 8 N -0.72 -10.65 5.52 -61.06 -0.34 -10.99 16 9 C 0.11 1.55 7.39 -4.32 -0.03 1.52 16 10 C 0.04 0.65 4.68 -3.68 -0.02 0.63 16 11 N -0.52 -10.19 3.99 -221.51 -0.88 -11.08 16 12 C 0.21 4.85 2.17 -68.86 -0.15 4.70 16 13 H 0.05 1.27 6.35 -51.93 -0.33 0.94 16 14 C -0.18 -4.00 8.28 37.16 0.31 -3.69 16 15 C -0.51 -12.71 7.76 -34.44 -0.27 -12.98 16 16 H 0.06 1.59 6.56 -52.48 -0.34 1.24 16 17 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 18 N -0.89 -24.13 11.32 55.43 0.63 -23.50 16 19 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.08 1.48 5.62 -51.93 -0.29 1.19 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.08 1.64 6.29 -51.93 -0.33 1.32 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.83 6.64 -51.93 -0.34 0.48 16 29 H 0.07 1.29 7.79 -51.93 -0.40 0.88 16 30 H 0.39 4.92 8.84 -40.82 -0.36 4.56 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.56 7.02 -51.93 -0.36 0.20 16 34 H 0.11 2.01 5.98 -51.93 -0.31 1.69 16 35 H 0.01 0.22 6.27 -51.93 -0.33 -0.10 16 36 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 37 H 0.03 0.63 6.76 -51.93 -0.35 0.28 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 283.78 15.07 4.28 4.28 Total: -1.00 -27.49 283.78 -6.90 -34.39 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.62 Total: 6.13 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.02 Total: -3.63 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.59 Total: -45.56 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.49 -6.90 -34.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.833 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds