Wall clock time and date at job start Mon Mar 30 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46634 * 2 1 4 4 C 1.52998 * 109.47172 * 120.00412 * 2 1 3 5 5 H 1.09004 * 109.38466 * 53.93223 * 4 2 1 6 6 C 1.50250 * 109.30170 * 294.19185 * 4 2 1 7 7 O 1.21283 * 118.62907 * 42.69786 * 6 4 2 8 8 N 1.33716 * 122.75219 * 222.70087 * 6 4 2 9 9 C 1.46014 * 122.92636 * 1.67988 * 8 6 4 10 10 C 1.52977 * 110.04093 * 341.84527 * 9 8 6 11 11 N 1.46901 * 109.38367 * 173.72403 * 4 2 1 12 12 C 1.46895 * 111.00103 * 293.71842 * 11 4 2 13 13 H 1.08998 * 109.47371 * 59.99896 * 12 11 4 14 14 C 1.53004 * 109.46788 * 299.99775 * 12 11 4 15 15 C 1.50703 * 109.47009 * 180.02562 * 12 11 4 16 16 H 1.08005 * 119.99924 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00032 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99885 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00014 * 179.97438 * 17 15 12 20 20 H 1.48494 * 109.46993 * 90.00282 * 19 17 15 21 21 H 1.48506 * 109.47243 * 210.00334 * 19 17 15 22 22 H 1.48498 * 109.47227 * 330.00353 * 19 17 15 23 23 H 1.09001 * 109.47156 * 308.65322 * 1 2 3 24 24 H 1.09001 * 109.47604 * 68.66302 * 1 2 3 25 25 H 1.09001 * 109.46670 * 188.66024 * 1 2 3 26 26 H 1.09002 * 109.46679 * 240.00294 * 2 1 3 27 27 H 1.08999 * 109.47508 * 300.00195 * 3 2 1 28 28 H 1.09000 * 109.46833 * 60.00692 * 3 2 1 29 29 H 1.09003 * 109.46490 * 179.97438 * 3 2 1 30 30 H 0.97003 * 118.54315 * 181.68676 * 8 6 4 31 31 H 1.09001 * 109.37806 * 221.66863 * 9 8 6 32 32 H 1.09004 * 109.37123 * 102.01848 * 9 8 6 33 33 H 1.08996 * 109.59545 * 290.51585 * 10 9 8 34 34 H 1.09000 * 109.72154 * 170.13621 * 10 9 8 35 35 H 1.09000 * 109.47140 * 60.00581 * 14 12 11 36 36 H 1.09005 * 109.46523 * 180.02562 * 14 12 11 37 37 H 1.09003 * 109.47184 * 299.99699 * 14 12 11 38 38 H 0.97004 * 119.99722 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5899 -1.7126 1.3037 6 6 1.6577 0.0678 2.4692 7 8 0.5430 0.5418 2.5290 8 7 2.4951 0.2695 3.4921 9 6 3.8682 -0.2269 3.5034 10 6 4.0346 -1.3324 2.4592 11 7 3.5012 -0.8528 1.1739 12 6 3.8936 -1.7452 0.0750 13 1 3.5300 -1.3403 -0.8694 14 6 3.2874 -3.1314 0.3027 15 6 5.3959 -1.8557 0.0296 16 1 5.9989 -1.3164 0.7453 17 6 6.0006 -2.6451 -0.9254 18 7 5.2663 -3.3012 -1.7972 19 14 7.8627 -2.7814 -0.9821 20 1 8.3024 -3.9124 -0.1262 21 1 8.2992 -3.0206 -2.3813 22 1 8.4668 -1.5197 -0.4839 23 1 -0.3633 0.6419 0.8025 24 1 -0.3634 0.3739 -0.9572 25 1 -0.3633 -1.0160 0.1547 26 1 1.8933 -0.5138 -0.8901 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 3.1300 1.4425 0.0005 30 1 2.1762 0.7678 4.2608 31 1 4.1009 -0.6246 4.4913 32 1 4.5506 0.5919 3.2752 33 1 3.4851 -2.2192 2.7748 34 1 5.0909 -1.5773 2.3479 35 1 2.2008 -3.0519 0.3358 36 1 3.5790 -3.7938 -0.5125 37 1 3.6511 -3.5364 1.2471 38 1 5.6918 -3.8569 -2.4689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260293377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:53 Heat of formation + Delta-G solvation = -49.455063 kcal Electronic energy + Delta-G solvation = -18869.510510 eV Core-core repulsion = 16132.144719 eV Total energy + Delta-G solvation = -2737.365791 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.74415 -38.69818 -36.85092 -35.55307 -33.86699 -30.80077 -30.05994 -28.04747 -27.32682 -26.23064 -24.68640 -21.94454 -21.68198 -19.42817 -18.44717 -18.18028 -17.30687 -16.84173 -16.58908 -15.80378 -15.48185 -15.09033 -14.91891 -14.58120 -14.42571 -13.81343 -13.47993 -13.15919 -13.03323 -12.96913 -12.86334 -12.54450 -12.53166 -12.43773 -12.11095 -11.97438 -11.85883 -11.68796 -11.53695 -10.81679 -10.52581 -10.29070 -9.97327 -8.99126 -8.07130 -6.17465 1.46277 1.48870 1.57596 1.62516 2.39103 2.45777 3.15874 3.23857 3.62591 3.91921 4.08041 4.09050 4.31689 4.41840 4.53967 4.63107 4.73943 4.79565 4.86885 4.87835 5.01564 5.04752 5.08885 5.12772 5.18092 5.22779 5.46067 5.52612 5.60166 5.70613 5.77358 5.93818 6.17397 6.31575 6.42827 6.61242 6.95072 7.29650 7.51406 8.99137 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029759 B = 0.008315 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.657394 B = 3366.710921 C = 3815.663322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.127 4.127 4 C 0.067 3.933 5 H 0.058 0.942 6 C 0.533 3.467 7 O -0.578 6.578 8 N -0.708 5.708 9 C 0.120 3.880 10 C 0.032 3.968 11 N -0.519 5.519 12 C 0.217 3.783 13 H 0.017 0.983 14 C -0.162 4.162 15 C -0.511 4.511 16 H 0.068 0.932 17 C 0.013 3.987 18 N -0.920 5.920 19 Si 0.957 3.043 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.266 1.266 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.406 0.594 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.100 0.900 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 5.040 8.778 10.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.184 4.184 4 C -0.045 4.045 5 H 0.076 0.924 6 C 0.320 3.680 7 O -0.459 6.459 8 N -0.360 5.360 9 C -0.004 4.004 10 C -0.096 4.096 11 N -0.244 5.244 12 C 0.110 3.890 13 H 0.035 0.965 14 C -0.221 4.221 15 C -0.550 4.550 16 H 0.086 0.914 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.783 3.217 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.191 1.191 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.243 0.757 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.118 0.882 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.023 5.527 8.394 10.495 hybrid contribution 0.523 -1.197 -0.072 1.308 sum -2.500 4.330 8.322 9.709 Atomic orbital electron populations 1.21995 0.93852 1.01871 1.02541 1.20923 0.96237 0.96915 0.95318 1.21623 1.01059 0.94644 1.01083 1.21794 0.91115 0.97633 0.93950 0.92408 1.20083 0.84240 0.79375 0.84259 1.90599 1.22153 1.52306 1.80806 1.45519 1.13990 1.56650 1.19836 1.21685 0.81538 0.97129 1.00046 1.22504 1.02654 0.95358 0.89068 1.62815 1.06416 1.50353 1.04775 1.19096 0.94656 0.86532 0.88730 0.96500 1.22248 0.96384 1.02417 1.01045 1.21370 0.91541 1.26989 1.15060 0.91428 1.25654 1.02182 0.95478 0.95269 1.70019 1.36436 1.31002 1.18540 0.85571 0.80733 0.78539 0.76844 1.20286 1.21762 1.19079 0.90537 0.92061 0.93850 0.91928 0.92144 0.93547 0.92847 0.75675 0.87104 0.90401 0.95329 0.88182 0.96059 0.91815 0.94870 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 8.64 71.98 0.62 -4.12 16 2 C -0.07 -2.71 2.60 -10.79 -0.03 -2.74 16 3 C -0.13 -4.32 8.73 71.98 0.63 -3.69 16 4 C 0.07 2.47 1.47 44.03 0.06 2.53 16 5 H 0.06 2.28 5.94 -2.39 -0.01 2.27 16 6 C 0.53 18.09 6.10 87.68 0.53 18.63 16 7 O -0.58 -21.60 13.87 -3.04 -0.04 -21.65 16 8 N -0.71 -18.86 5.52 -466.09 -2.57 -21.43 16 9 C 0.12 2.88 7.39 86.46 0.64 3.52 16 10 C 0.03 1.07 4.68 86.24 0.40 1.47 16 11 N -0.52 -20.24 3.99 -854.73 -3.41 -23.66 16 12 C 0.22 10.20 2.17 44.17 0.10 10.29 16 13 H 0.02 0.92 6.35 -2.39 -0.02 0.90 16 14 C -0.16 -7.49 8.28 71.98 0.60 -6.89 16 15 C -0.51 -25.75 7.76 25.60 0.20 -25.55 16 16 H 0.07 3.29 6.56 -2.91 -0.02 3.27 16 17 C 0.01 0.67 5.30 84.65 0.45 1.12 16 18 N -0.92 -50.81 11.32 21.45 0.24 -50.57 16 19 Si 0.96 41.40 29.54 68.60 2.03 43.43 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H 0.08 2.64 5.62 -2.39 -0.01 2.63 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.40 8.10 -2.39 -0.02 1.38 16 26 H 0.06 2.53 6.29 -2.39 -0.01 2.52 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.57 6.64 -2.39 -0.02 1.56 16 29 H 0.05 1.97 7.79 -2.39 -0.02 1.95 16 30 H 0.41 8.82 8.84 -92.71 -0.82 8.00 16 31 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.03 0.96 7.02 -2.39 -0.02 0.94 16 34 H 0.10 3.51 5.98 -2.39 -0.01 3.50 16 35 H 0.02 0.90 6.27 -2.39 -0.01 0.88 16 36 H 0.06 3.32 6.07 -2.38 -0.01 3.31 16 37 H 0.03 1.45 6.76 -2.39 -0.02 1.44 16 38 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -58.68 283.78 0.69 -57.99 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.25 Total: 21.31 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 4.20 Total: -5.43 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -5.74 Total: -95.65 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.65 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -58.68 0.69 -57.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.533 kcal (2) G-P(sol) polarization free energy of solvation -58.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds