Wall clock time and date at job start Mon Mar 30 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53010 * 109.47132 * 2 1 4 4 C 1.52996 * 109.47494 * 120.00104 * 2 1 3 5 5 H 1.09003 * 109.30301 * 53.57410 * 4 2 1 6 6 C 1.50258 * 109.38639 * 293.83626 * 4 2 1 7 7 O 1.21284 * 118.62520 * 42.64170 * 6 4 2 8 8 N 1.33714 * 122.75513 * 222.36004 * 6 4 2 9 9 C 1.46012 * 122.92315 * 1.96556 * 8 6 4 10 10 C 1.52978 * 110.04285 * 341.84098 * 9 8 6 11 11 N 1.47076 * 109.27674 * 173.50384 * 4 2 1 12 12 C 1.46898 * 110.94710 * 293.92617 * 11 4 2 13 13 H 1.08998 * 109.47401 * 54.74991 * 12 11 4 14 14 C 1.53003 * 109.46851 * 174.74891 * 12 11 4 15 15 C 1.50698 * 109.47187 * 294.74646 * 12 11 4 16 16 H 1.07996 * 120.00423 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99629 * 179.97438 * 15 12 11 18 18 N 1.31508 * 120.00450 * 0.02562 * 17 15 12 19 19 Si 1.86808 * 119.99775 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46984 * 90.00218 * 19 17 15 21 21 H 1.48499 * 109.47060 * 210.00558 * 19 17 15 22 22 H 1.48498 * 109.46861 * 330.00519 * 19 17 15 23 23 H 1.09006 * 109.46978 * 310.09663 * 1 2 3 24 24 H 1.09003 * 109.47495 * 70.08971 * 1 2 3 25 25 H 1.08994 * 109.47324 * 190.09502 * 1 2 3 26 26 H 1.08997 * 109.47243 * 240.00251 * 2 1 3 27 27 H 1.09001 * 109.46708 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47220 * 300.00087 * 3 2 1 29 29 H 1.08997 * 109.46851 * 60.00012 * 3 2 1 30 30 H 0.96996 * 118.53828 * 181.98945 * 8 6 4 31 31 H 1.09005 * 109.37419 * 102.01157 * 9 8 6 32 32 H 1.08997 * 109.37638 * 221.66258 * 9 8 6 33 33 H 1.09001 * 109.59471 * 170.06884 * 10 9 8 34 34 H 1.09004 * 109.59561 * 290.36379 * 10 9 8 35 35 H 1.09001 * 109.46941 * 181.00308 * 14 12 11 36 36 H 1.09000 * 109.47075 * 301.00519 * 14 12 11 37 37 H 1.09002 * 109.47131 * 61.00330 * 14 12 11 38 38 H 0.97002 * 120.00297 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5842 -1.7098 1.3058 6 6 1.6663 0.0709 2.4700 7 8 0.5545 0.5515 2.5330 8 7 2.5061 0.2636 3.4925 9 6 3.8761 -0.2413 3.5001 10 6 4.0344 -1.3439 2.4516 11 7 3.5023 -0.8562 1.1688 12 6 3.8877 -1.7471 0.0662 13 1 3.4433 -1.3891 -0.8625 14 6 5.4116 -1.7605 -0.0697 15 6 3.3967 -3.1427 0.3529 16 1 2.8523 -3.3473 1.2629 17 6 3.6414 -4.1580 -0.5473 18 7 4.3038 -3.9088 -1.6557 19 14 3.0321 -5.8879 -0.1923 20 1 1.6672 -6.0565 -0.7523 21 1 3.9493 -6.8739 -0.8181 22 1 2.9954 -6.1082 1.2758 23 1 -0.3633 0.6619 0.7862 24 1 -0.3634 0.3500 -0.9662 25 1 -0.3634 -1.0117 0.1801 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 2.1911 0.7607 4.2636 31 1 4.5633 0.5741 3.2740 32 1 4.1076 -0.6440 4.4862 33 1 5.0897 -1.5924 2.3388 34 1 3.4820 -2.2294 2.7661 35 1 5.6967 -2.4076 -0.8992 36 1 5.7684 -0.7482 -0.2593 37 1 5.8554 -2.1353 0.8526 38 1 4.4763 -4.6232 -2.2887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260293393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:59 Heat of formation + Delta-G solvation = -33.453416 kcal Electronic energy + Delta-G solvation = -18952.339848 eV Core-core repulsion = 16215.667941 eV Total energy + Delta-G solvation = -2736.671907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19085 -37.02188 -35.43934 -33.84049 -32.08715 -29.16159 -28.75083 -26.52400 -25.21677 -24.58451 -23.30054 -20.27592 -19.78069 -18.29409 -16.97139 -16.10710 -15.96672 -15.28188 -14.89217 -14.36162 -13.85638 -13.58365 -13.35302 -12.98219 -12.75532 -12.17065 -11.82578 -11.68691 -11.43980 -11.32323 -11.12641 -10.99605 -10.83696 -10.61922 -10.41035 -10.26214 -10.16831 -9.97479 -9.72841 -9.37342 -8.84369 -8.68993 -8.43071 -7.38232 -6.08275 -4.21180 3.12537 3.22352 3.30003 3.32224 3.70594 4.33235 4.73333 5.09455 5.20002 5.32375 5.49630 5.64832 5.68444 5.73476 5.94163 6.21268 6.25630 6.31470 6.35663 6.51170 6.55840 6.62460 6.65710 6.84223 6.92170 6.97035 7.00395 7.10998 7.16509 7.41180 7.61162 7.70441 7.79505 8.01827 8.11382 8.29745 8.69249 8.86359 9.47222 10.92481 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.009248 C = 0.008616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.867592 B = 3026.931908 C = 3249.026165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 C -0.138 4.138 4 C 0.078 3.922 5 H 0.083 0.917 6 C 0.532 3.468 7 O -0.560 6.560 8 N -0.723 5.723 9 C 0.114 3.886 10 C 0.038 3.962 11 N -0.522 5.522 12 C 0.203 3.797 13 H 0.049 0.951 14 C -0.130 4.130 15 C -0.548 4.548 16 H 0.055 0.945 17 C 0.072 3.928 18 N -0.883 5.883 19 Si 0.886 3.114 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.389 0.611 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.016 0.984 37 H 0.027 0.973 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 6.221 6.412 8.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.090 4.090 3 C -0.195 4.195 4 C -0.034 4.034 5 H 0.100 0.900 6 C 0.320 3.680 7 O -0.439 6.439 8 N -0.374 5.374 9 C -0.011 4.011 10 C -0.091 4.091 11 N -0.247 5.247 12 C 0.098 3.902 13 H 0.067 0.933 14 C -0.189 4.189 15 C -0.587 4.587 16 H 0.073 0.927 17 C -0.131 4.131 18 N -0.521 5.521 19 Si 0.714 3.286 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.098 0.902 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.224 0.776 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.345 6.722 5.973 8.999 hybrid contribution -0.593 -1.840 0.682 2.050 sum -0.938 4.882 6.655 8.306 Atomic orbital electron populations 1.22040 0.95204 1.02238 1.01423 1.20903 0.95269 0.96022 0.96782 1.21761 1.01713 0.95618 1.00405 1.21684 0.91464 0.98197 0.92031 0.89994 1.20529 0.83992 0.79229 0.84214 1.90604 1.21560 1.51203 1.80533 1.45638 1.14130 1.57482 1.20183 1.21595 0.82419 0.97717 0.99340 1.22329 1.02427 0.94500 0.89848 1.63187 1.06995 1.50195 1.04338 1.19397 0.93174 0.88749 0.88930 0.93349 1.21809 0.97160 0.98323 1.01562 1.21644 1.36535 0.94627 1.05875 0.92735 1.24864 0.94659 0.98689 0.94874 1.69864 1.39700 1.32786 1.09732 0.86689 0.78828 0.84636 0.78445 1.20611 1.21124 1.20063 0.90238 0.93891 0.93430 0.89548 0.91793 0.93758 0.93474 0.77622 0.91672 0.91408 0.88774 0.93733 0.89663 0.96482 0.95371 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.62 37.15 0.32 -2.38 16 2 C -0.07 -1.33 2.61 -90.62 -0.24 -1.57 16 3 C -0.14 -2.38 8.72 37.16 0.32 -2.05 16 4 C 0.08 1.53 1.54 -68.98 -0.11 1.42 16 5 H 0.08 1.81 6.60 -51.93 -0.34 1.47 16 6 C 0.53 9.81 6.10 -11.67 -0.07 9.74 16 7 O -0.56 -11.31 13.90 5.55 0.08 -11.24 16 8 N -0.72 -10.91 5.52 -61.06 -0.34 -11.24 16 9 C 0.11 1.55 7.39 -4.32 -0.03 1.52 16 10 C 0.04 0.66 4.81 -3.68 -0.02 0.64 16 11 N -0.52 -10.23 3.98 -221.37 -0.88 -11.11 16 12 C 0.20 4.67 2.19 -68.86 -0.15 4.52 16 13 H 0.05 1.23 6.12 -51.93 -0.32 0.92 16 14 C -0.13 -2.91 8.81 37.16 0.33 -2.58 16 15 C -0.55 -13.79 7.07 -34.44 -0.24 -14.04 16 16 H 0.05 1.39 5.86 -52.49 -0.31 1.08 16 17 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 18 N -0.88 -23.77 11.33 55.43 0.63 -23.14 16 19 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H 0.08 1.48 5.72 -51.93 -0.30 1.18 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 26 H 0.09 1.78 6.17 -51.93 -0.32 1.46 16 27 H 0.06 1.13 7.79 -51.93 -0.40 0.73 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.83 6.62 -51.93 -0.34 0.49 16 30 H 0.39 5.04 8.84 -40.82 -0.36 4.67 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.62 5.89 -51.93 -0.31 1.31 16 34 H 0.04 0.85 6.77 -51.93 -0.35 0.50 16 35 H 0.08 2.12 6.10 -51.93 -0.32 1.80 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.03 0.59 6.27 -51.93 -0.33 0.26 16 38 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 284.57 15.07 4.29 4.29 Total: -1.00 -27.39 284.57 -6.89 -34.28 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.66 Total: 5.70 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 0.02 Total: -2.99 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.59 Total: -45.49 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.39 -6.89 -34.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.825 kcal (2) G-P(sol) polarization free energy of solvation -27.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds