Wall clock time and date at job start Mon Mar 30 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53010 * 109.47132 * 2 1 4 4 C 1.52996 * 109.47494 * 120.00104 * 2 1 3 5 5 H 1.09003 * 109.30301 * 53.57410 * 4 2 1 6 6 C 1.50258 * 109.38639 * 293.83626 * 4 2 1 7 7 O 1.21284 * 118.62520 * 42.64170 * 6 4 2 8 8 N 1.33714 * 122.75513 * 222.36004 * 6 4 2 9 9 C 1.46012 * 122.92315 * 1.96556 * 8 6 4 10 10 C 1.52978 * 110.04285 * 341.84098 * 9 8 6 11 11 N 1.47076 * 109.27674 * 173.50384 * 4 2 1 12 12 C 1.46898 * 110.94710 * 293.92617 * 11 4 2 13 13 H 1.08998 * 109.47401 * 54.74991 * 12 11 4 14 14 C 1.53003 * 109.46851 * 174.74891 * 12 11 4 15 15 C 1.50698 * 109.47187 * 294.74646 * 12 11 4 16 16 H 1.07996 * 120.00423 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99629 * 179.97438 * 15 12 11 18 18 N 1.31508 * 120.00450 * 0.02562 * 17 15 12 19 19 Si 1.86808 * 119.99775 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46984 * 90.00218 * 19 17 15 21 21 H 1.48499 * 109.47060 * 210.00558 * 19 17 15 22 22 H 1.48498 * 109.46861 * 330.00519 * 19 17 15 23 23 H 1.09006 * 109.46978 * 310.09663 * 1 2 3 24 24 H 1.09003 * 109.47495 * 70.08971 * 1 2 3 25 25 H 1.08994 * 109.47324 * 190.09502 * 1 2 3 26 26 H 1.08997 * 109.47243 * 240.00251 * 2 1 3 27 27 H 1.09001 * 109.46708 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47220 * 300.00087 * 3 2 1 29 29 H 1.08997 * 109.46851 * 60.00012 * 3 2 1 30 30 H 0.96996 * 118.53828 * 181.98945 * 8 6 4 31 31 H 1.09005 * 109.37419 * 102.01157 * 9 8 6 32 32 H 1.08997 * 109.37638 * 221.66258 * 9 8 6 33 33 H 1.09001 * 109.59471 * 170.06884 * 10 9 8 34 34 H 1.09004 * 109.59561 * 290.36379 * 10 9 8 35 35 H 1.09001 * 109.46941 * 181.00308 * 14 12 11 36 36 H 1.09000 * 109.47075 * 301.00519 * 14 12 11 37 37 H 1.09002 * 109.47131 * 61.00330 * 14 12 11 38 38 H 0.97002 * 120.00297 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5842 -1.7098 1.3058 6 6 1.6663 0.0709 2.4700 7 8 0.5545 0.5515 2.5330 8 7 2.5061 0.2636 3.4925 9 6 3.8761 -0.2413 3.5001 10 6 4.0344 -1.3439 2.4516 11 7 3.5023 -0.8562 1.1688 12 6 3.8877 -1.7471 0.0662 13 1 3.4433 -1.3891 -0.8625 14 6 5.4116 -1.7605 -0.0697 15 6 3.3967 -3.1427 0.3529 16 1 2.8523 -3.3473 1.2629 17 6 3.6414 -4.1580 -0.5473 18 7 4.3038 -3.9088 -1.6557 19 14 3.0321 -5.8879 -0.1923 20 1 1.6672 -6.0565 -0.7523 21 1 3.9493 -6.8739 -0.8181 22 1 2.9954 -6.1082 1.2758 23 1 -0.3633 0.6619 0.7862 24 1 -0.3634 0.3500 -0.9662 25 1 -0.3634 -1.0117 0.1801 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 2.1911 0.7607 4.2636 31 1 4.5633 0.5741 3.2740 32 1 4.1076 -0.6440 4.4862 33 1 5.0897 -1.5924 2.3388 34 1 3.4820 -2.2294 2.7661 35 1 5.6967 -2.4076 -0.8992 36 1 5.7684 -0.7482 -0.2593 37 1 5.8554 -2.1353 0.8526 38 1 4.4763 -4.6232 -2.2887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260293393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:59 Heat of formation + Delta-G solvation = -52.328433 kcal Electronic energy + Delta-G solvation = -18953.158330 eV Core-core repulsion = 16215.667941 eV Total energy + Delta-G solvation = -2737.490389 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66451 -38.61785 -36.80921 -35.54896 -33.84077 -30.86923 -30.16753 -27.96878 -27.17747 -26.13151 -24.73686 -21.78016 -21.48247 -19.85986 -18.41444 -17.82346 -17.51839 -16.87801 -16.58320 -15.85104 -15.42406 -15.04018 -15.00059 -14.46759 -14.43515 -13.61337 -13.36254 -13.31223 -13.01571 -12.95883 -12.81187 -12.70654 -12.45442 -12.27220 -12.13450 -11.92204 -11.73804 -11.64436 -11.40541 -11.17798 -10.52526 -10.26164 -9.96133 -9.08999 -8.05819 -6.25397 1.36419 1.40262 1.46686 1.66027 2.39596 2.41898 3.14839 3.20448 3.68382 3.96359 4.11582 4.20492 4.35764 4.44791 4.60191 4.73735 4.79290 4.84173 4.88570 5.07078 5.11709 5.13906 5.15539 5.18853 5.23258 5.27733 5.47394 5.53872 5.58124 5.70281 5.93050 6.02399 6.14398 6.28396 6.33025 6.52139 6.91485 7.31810 7.45333 8.91610 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.009248 C = 0.008616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.867592 B = 3026.931908 C = 3249.026165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C -0.125 4.125 4 C 0.078 3.922 5 H 0.051 0.949 6 C 0.532 3.468 7 O -0.580 6.580 8 N -0.709 5.709 9 C 0.120 3.880 10 C 0.032 3.968 11 N -0.514 5.514 12 C 0.209 3.791 13 H 0.019 0.981 14 C -0.119 4.119 15 C -0.549 4.549 16 H 0.047 0.953 17 C 0.029 3.971 18 N -0.907 5.907 19 Si 0.939 3.061 20 H -0.283 1.283 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.406 0.594 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.025 0.975 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.037 0.963 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 7.021 7.966 10.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.182 4.182 4 C -0.034 4.034 5 H 0.068 0.932 6 C 0.319 3.681 7 O -0.461 6.461 8 N -0.361 5.361 9 C -0.004 4.004 10 C -0.096 4.096 11 N -0.239 5.239 12 C 0.102 3.898 13 H 0.037 0.963 14 C -0.177 4.177 15 C -0.589 4.589 16 H 0.065 0.935 17 C -0.172 4.172 18 N -0.546 5.546 19 Si 0.765 3.235 20 H -0.209 1.209 21 H -0.208 1.208 22 H -0.197 1.197 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.243 0.757 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.078 7.531 7.567 10.677 hybrid contribution -0.708 -2.084 0.220 2.211 sum -0.630 5.448 7.787 9.525 Atomic orbital electron populations 1.21957 0.94414 1.01494 1.02245 1.20894 0.95959 0.96874 0.95510 1.21634 1.01188 0.94312 1.01116 1.21611 0.91102 0.97135 0.93509 0.93156 1.20176 0.84179 0.79252 0.84445 1.90597 1.22418 1.52120 1.80979 1.45512 1.14293 1.56690 1.19604 1.21710 0.81682 0.97057 0.99929 1.22455 1.02084 0.95437 0.89629 1.63145 1.07084 1.49001 1.04690 1.19163 0.93408 0.88141 0.89059 0.96332 1.21628 0.96530 0.98644 1.00919 1.21854 1.35868 0.95814 1.05322 0.93528 1.25481 0.95096 1.01687 0.94930 1.69973 1.40729 1.33519 1.10379 0.85862 0.78073 0.81247 0.78276 1.20921 1.20762 1.19704 0.90642 0.92119 0.94559 0.91951 0.92360 0.92105 0.93601 0.75749 0.89741 0.87410 0.88395 0.95713 0.92330 0.94929 0.94389 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.62 71.98 0.62 -4.48 16 2 C -0.07 -2.78 2.61 -10.79 -0.03 -2.81 16 3 C -0.13 -4.19 8.72 71.99 0.63 -3.56 16 4 C 0.08 3.09 1.54 44.00 0.07 3.15 16 5 H 0.05 2.30 6.60 -2.39 -0.02 2.29 16 6 C 0.53 18.92 6.10 87.68 0.54 19.45 16 7 O -0.58 -22.77 13.90 -3.04 -0.04 -22.81 16 8 N -0.71 -19.36 5.52 -466.09 -2.57 -21.93 16 9 C 0.12 2.82 7.39 86.46 0.64 3.46 16 10 C 0.03 1.07 4.81 86.24 0.41 1.49 16 11 N -0.51 -19.91 3.98 -854.28 -3.40 -23.31 16 12 C 0.21 9.72 2.19 44.17 0.10 9.82 16 13 H 0.02 0.99 6.12 -2.39 -0.01 0.97 16 14 C -0.12 -5.28 8.81 71.98 0.63 -4.64 16 15 C -0.55 -28.07 7.07 25.60 0.18 -27.89 16 16 H 0.05 2.42 5.86 -2.91 -0.02 2.40 16 17 C 0.03 1.51 5.30 84.66 0.45 1.95 16 18 N -0.91 -49.63 11.33 21.45 0.24 -49.39 16 19 Si 0.94 42.33 29.54 68.60 2.03 44.35 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H 0.07 2.77 5.72 -2.38 -0.01 2.75 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 25 H 0.04 1.33 8.07 -2.39 -0.02 1.31 16 26 H 0.06 2.66 6.17 -2.39 -0.01 2.65 16 27 H 0.06 1.99 7.79 -2.39 -0.02 1.97 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.54 6.62 -2.39 -0.02 1.52 16 30 H 0.41 9.06 8.84 -92.71 -0.82 8.24 16 31 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 3.16 5.89 -2.39 -0.01 3.15 16 34 H 0.02 0.92 6.77 -2.38 -0.02 0.90 16 35 H 0.06 2.93 6.10 -2.39 -0.01 2.92 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.56 6.27 -2.39 -0.01 1.55 16 38 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -59.00 284.57 0.74 -58.26 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.24 Total: 18.88 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 4.24 Total: -4.05 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -5.73 Total: -94.63 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.04 Total: -22.81 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -59.00 0.74 -58.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.933 kcal (2) G-P(sol) polarization free energy of solvation -59.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds