Wall clock time and date at job start Mon Mar 30 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47305 * 2 1 4 4 C 1.53001 * 109.47379 * 120.00202 * 2 1 3 5 5 H 1.08993 * 109.38516 * 185.77278 * 4 2 1 6 6 C 1.50256 * 109.38287 * 305.46579 * 4 2 1 7 7 O 1.21272 * 118.62416 * 317.35534 * 6 4 2 8 8 N 1.33724 * 122.74923 * 137.35370 * 6 4 2 9 9 C 1.46003 * 122.92702 * 358.31755 * 8 6 4 10 10 C 1.52980 * 110.04509 * 18.15539 * 9 8 6 11 11 N 1.46903 * 109.38448 * 65.98182 * 4 2 1 12 12 C 1.46898 * 111.00139 * 66.18189 * 11 4 2 13 13 H 1.09000 * 109.46965 * 309.49845 * 12 11 4 14 14 C 1.53004 * 109.47328 * 189.49688 * 12 11 4 15 15 C 1.50707 * 109.47066 * 69.49582 * 12 11 4 16 16 H 1.08000 * 119.99563 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99786 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00212 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99774 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47146 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47252 * 120.00042 * 19 17 15 22 22 H 1.48503 * 109.46920 * 239.99707 * 19 17 15 23 23 H 1.08999 * 109.47379 * 297.63642 * 1 2 3 24 24 H 1.09001 * 109.47253 * 57.64058 * 1 2 3 25 25 H 1.09004 * 109.47171 * 177.63487 * 1 2 3 26 26 H 1.09000 * 109.47101 * 240.00289 * 2 1 3 27 27 H 1.09003 * 109.46770 * 52.10519 * 3 2 1 28 28 H 1.08993 * 109.47175 * 172.10468 * 3 2 1 29 29 H 1.09004 * 109.47056 * 292.10483 * 3 2 1 30 30 H 0.97003 * 118.53336 * 178.30649 * 8 6 4 31 31 H 1.09006 * 109.37312 * 257.98233 * 9 8 6 32 32 H 1.08999 * 109.37806 * 138.33049 * 9 8 6 33 33 H 1.09004 * 109.59653 * 189.93920 * 10 9 8 34 34 H 1.08997 * 109.71939 * 69.55577 * 10 9 8 35 35 H 1.09002 * 109.46542 * 52.51352 * 14 12 11 36 36 H 1.08995 * 109.47148 * 172.51421 * 14 12 11 37 37 H 1.09003 * 109.46969 * 292.51653 * 14 12 11 38 38 H 0.96997 * 120.00109 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1251 -0.6318 1.3010 6 6 1.4310 -0.0937 2.4710 7 8 1.3608 1.1156 2.5294 8 7 0.9630 -0.8129 3.4967 9 6 0.9675 -2.2728 3.5098 10 6 1.9479 -2.8036 2.4622 11 7 1.6708 -2.1413 1.1772 12 6 2.3742 -2.8130 0.0763 13 1 2.2480 -2.2372 -0.8405 14 6 1.7949 -4.2157 -0.1186 15 6 3.8410 -2.9167 0.4065 16 1 4.2134 -2.5226 1.3405 17 6 4.7076 -3.5138 -0.4844 18 7 4.2543 -3.9923 -1.6224 19 14 6.5256 -3.6429 -0.0748 20 1 6.7779 -3.0325 1.2551 21 1 6.9266 -5.0725 -0.0480 22 1 7.3175 -2.9260 -1.1064 23 1 -0.3634 0.4767 0.9104 24 1 -0.3634 0.5500 -0.8681 25 1 -0.3634 -1.0268 -0.0424 26 1 1.8933 -0.5138 -0.8900 27 1 1.5660 1.9954 0.8110 28 1 3.1208 1.4457 0.1412 29 1 1.7966 1.9140 -0.9522 30 1 0.6047 -0.3436 4.2663 31 1 -0.0343 -2.6396 3.2862 32 1 1.2676 -2.6247 4.4969 33 1 1.8192 -3.8805 2.3536 34 1 2.9702 -2.5870 2.7721 35 1 0.7121 -4.1499 -0.2253 36 1 2.2219 -4.6637 -1.0158 37 1 2.0379 -4.8326 0.7466 38 1 4.8639 -4.4126 -2.2490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260293402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:01 Heat of formation + Delta-G solvation = -33.907003 kcal Electronic energy + Delta-G solvation = -18940.084789 eV Core-core repulsion = 16203.393212 eV Total energy + Delta-G solvation = -2736.691576 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20212 -37.02087 -35.44666 -33.84116 -32.07730 -29.19366 -28.74112 -26.52898 -25.20242 -24.58755 -23.30613 -20.30170 -19.77984 -18.29161 -16.96919 -16.15908 -15.93923 -15.29581 -14.88499 -14.36982 -13.85902 -13.59157 -13.35447 -12.95901 -12.73947 -12.16531 -11.81895 -11.70401 -11.45536 -11.33167 -11.13939 -10.99165 -10.87596 -10.60830 -10.40742 -10.26369 -10.18528 -9.99320 -9.75175 -9.33373 -8.82752 -8.69143 -8.44112 -7.37383 -6.08776 -4.20797 3.11430 3.21074 3.30457 3.32983 3.69998 4.33260 4.72870 5.08736 5.19819 5.32691 5.48466 5.64721 5.68287 5.72543 5.93778 6.21728 6.25410 6.30014 6.35473 6.51388 6.55407 6.61487 6.64361 6.84665 6.91305 6.96695 7.01212 7.11750 7.16673 7.40759 7.61711 7.70214 7.79649 8.02336 8.11077 8.29400 8.68699 8.86977 9.47555 10.92816 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.009134 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.216279 B = 3064.819852 C = 3269.852466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.154 4.154 4 C 0.079 3.921 5 H 0.080 0.920 6 C 0.533 3.467 7 O -0.560 6.560 8 N -0.722 5.722 9 C 0.114 3.886 10 C 0.041 3.959 11 N -0.523 5.523 12 C 0.203 3.797 13 H 0.048 0.952 14 C -0.126 4.126 15 C -0.548 4.548 16 H 0.056 0.944 17 C 0.072 3.928 18 N -0.883 5.883 19 Si 0.886 3.114 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.389 0.611 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.017 0.983 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 2.475 6.364 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C -0.212 4.212 4 C -0.033 4.033 5 H 0.098 0.902 6 C 0.321 3.679 7 O -0.439 6.439 8 N -0.374 5.374 9 C -0.011 4.011 10 C -0.088 4.088 11 N -0.249 5.249 12 C 0.097 3.903 13 H 0.066 0.934 14 C -0.184 4.184 15 C -0.587 4.587 16 H 0.074 0.926 17 C -0.131 4.131 18 N -0.521 5.521 19 Si 0.714 3.286 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.224 0.776 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.265 2.842 5.926 9.079 hybrid contribution 1.934 -0.158 0.697 2.062 sum -4.330 2.684 6.623 8.356 Atomic orbital electron populations 1.21743 0.95348 1.01869 1.00410 1.20915 0.95914 0.95474 0.96708 1.22084 1.00955 0.96394 1.01735 1.21625 0.99211 0.90428 0.92057 0.90207 1.20512 0.76278 0.86927 0.84217 1.90590 1.58194 1.14509 1.80573 1.45638 1.63748 1.07885 1.20133 1.21604 1.00802 0.79332 0.99377 1.22298 0.96467 1.00320 0.89732 1.63058 1.57490 0.99898 1.04405 1.19411 0.90312 0.91702 0.88859 0.93393 1.21749 0.96390 0.98223 1.02015 1.21692 0.93522 1.39208 1.04310 0.92609 1.24871 0.98456 0.94962 0.94829 1.69894 1.34801 1.38703 1.08669 0.86630 0.85711 0.77768 0.78453 1.19960 1.20956 1.20937 0.93512 0.93762 0.91810 0.89613 0.89939 0.93466 0.93885 0.77609 0.91662 0.91400 0.88887 0.93649 0.96443 0.90115 0.95337 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.76 37.16 0.33 -2.02 16 2 C -0.07 -1.33 2.61 -90.62 -0.24 -1.57 16 3 C -0.15 -2.73 8.65 37.16 0.32 -2.40 16 4 C 0.08 1.54 1.58 -69.08 -0.11 1.43 16 5 H 0.08 1.76 6.94 -51.93 -0.36 1.40 16 6 C 0.53 9.78 6.07 -11.67 -0.07 9.71 16 7 O -0.56 -11.25 13.88 5.56 0.08 -11.18 16 8 N -0.72 -10.87 5.52 -61.07 -0.34 -11.21 16 9 C 0.11 1.55 7.39 -4.32 -0.03 1.51 16 10 C 0.04 0.71 4.76 -3.67 -0.02 0.69 16 11 N -0.52 -10.24 3.96 -221.50 -0.88 -11.12 16 12 C 0.20 4.66 2.20 -68.86 -0.15 4.51 16 13 H 0.05 1.22 6.00 -51.93 -0.31 0.91 16 14 C -0.13 -2.80 8.64 37.16 0.32 -2.48 16 15 C -0.55 -13.81 7.08 -34.44 -0.24 -14.06 16 16 H 0.06 1.42 5.89 -52.49 -0.31 1.11 16 17 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 18 N -0.88 -23.81 11.41 55.43 0.63 -23.17 16 19 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.05 0.82 6.59 -51.93 -0.34 0.48 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 26 H 0.09 1.75 6.14 -51.93 -0.32 1.43 16 27 H 0.08 1.53 5.58 -51.93 -0.29 1.24 16 28 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.39 5.02 8.84 -40.82 -0.36 4.66 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.61 6.21 -51.93 -0.32 1.29 16 34 H 0.05 0.87 6.59 -51.93 -0.34 0.52 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 2.00 6.31 -51.93 -0.33 1.67 16 37 H 0.03 0.61 6.68 -51.93 -0.35 0.26 16 38 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 285.42 15.07 4.30 4.30 Total: -1.00 -27.45 285.42 -6.92 -34.37 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.71 Total: 5.45 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 0.01 Total: -2.90 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.58 Total: -45.51 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.45 -6.92 -34.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.462 kcal (2) G-P(sol) polarization free energy of solvation -27.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds