Wall clock time and date at job start Mon Mar 30 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47305 * 2 1 4 4 C 1.53001 * 109.47379 * 120.00202 * 2 1 3 5 5 H 1.08993 * 109.38516 * 185.77278 * 4 2 1 6 6 C 1.50256 * 109.38287 * 305.46579 * 4 2 1 7 7 O 1.21272 * 118.62416 * 317.35534 * 6 4 2 8 8 N 1.33724 * 122.74923 * 137.35370 * 6 4 2 9 9 C 1.46003 * 122.92702 * 358.31755 * 8 6 4 10 10 C 1.52980 * 110.04509 * 18.15539 * 9 8 6 11 11 N 1.46903 * 109.38448 * 65.98182 * 4 2 1 12 12 C 1.46898 * 111.00139 * 66.18189 * 11 4 2 13 13 H 1.09000 * 109.46965 * 309.49845 * 12 11 4 14 14 C 1.53004 * 109.47328 * 189.49688 * 12 11 4 15 15 C 1.50707 * 109.47066 * 69.49582 * 12 11 4 16 16 H 1.08000 * 119.99563 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99786 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00212 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99774 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47146 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47252 * 120.00042 * 19 17 15 22 22 H 1.48503 * 109.46920 * 239.99707 * 19 17 15 23 23 H 1.08999 * 109.47379 * 297.63642 * 1 2 3 24 24 H 1.09001 * 109.47253 * 57.64058 * 1 2 3 25 25 H 1.09004 * 109.47171 * 177.63487 * 1 2 3 26 26 H 1.09000 * 109.47101 * 240.00289 * 2 1 3 27 27 H 1.09003 * 109.46770 * 52.10519 * 3 2 1 28 28 H 1.08993 * 109.47175 * 172.10468 * 3 2 1 29 29 H 1.09004 * 109.47056 * 292.10483 * 3 2 1 30 30 H 0.97003 * 118.53336 * 178.30649 * 8 6 4 31 31 H 1.09006 * 109.37312 * 257.98233 * 9 8 6 32 32 H 1.08999 * 109.37806 * 138.33049 * 9 8 6 33 33 H 1.09004 * 109.59653 * 189.93920 * 10 9 8 34 34 H 1.08997 * 109.71939 * 69.55577 * 10 9 8 35 35 H 1.09002 * 109.46542 * 52.51352 * 14 12 11 36 36 H 1.08995 * 109.47148 * 172.51421 * 14 12 11 37 37 H 1.09003 * 109.46969 * 292.51653 * 14 12 11 38 38 H 0.96997 * 120.00109 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1251 -0.6318 1.3010 6 6 1.4310 -0.0937 2.4710 7 8 1.3608 1.1156 2.5294 8 7 0.9630 -0.8129 3.4967 9 6 0.9675 -2.2728 3.5098 10 6 1.9479 -2.8036 2.4622 11 7 1.6708 -2.1413 1.1772 12 6 2.3742 -2.8130 0.0763 13 1 2.2480 -2.2372 -0.8405 14 6 1.7949 -4.2157 -0.1186 15 6 3.8410 -2.9167 0.4065 16 1 4.2134 -2.5226 1.3405 17 6 4.7076 -3.5138 -0.4844 18 7 4.2543 -3.9923 -1.6224 19 14 6.5256 -3.6429 -0.0748 20 1 6.7779 -3.0325 1.2551 21 1 6.9266 -5.0725 -0.0480 22 1 7.3175 -2.9260 -1.1064 23 1 -0.3634 0.4767 0.9104 24 1 -0.3634 0.5500 -0.8681 25 1 -0.3634 -1.0268 -0.0424 26 1 1.8933 -0.5138 -0.8900 27 1 1.5660 1.9954 0.8110 28 1 3.1208 1.4457 0.1412 29 1 1.7966 1.9140 -0.9522 30 1 0.6047 -0.3436 4.2663 31 1 -0.0343 -2.6396 3.2862 32 1 1.2676 -2.6247 4.4969 33 1 1.8192 -3.8805 2.3536 34 1 2.9702 -2.5870 2.7721 35 1 0.7121 -4.1499 -0.2253 36 1 2.2219 -4.6637 -1.0158 37 1 2.0379 -4.8326 0.7466 38 1 4.8639 -4.4126 -2.2490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260293402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:01 Heat of formation + Delta-G solvation = -52.790976 kcal Electronic energy + Delta-G solvation = -18940.903659 eV Core-core repulsion = 16203.393212 eV Total energy + Delta-G solvation = -2737.510447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.67223 -38.61495 -36.81193 -35.54870 -33.83016 -30.90349 -30.15644 -27.96250 -27.17259 -26.13138 -24.73843 -21.81564 -21.47263 -19.84895 -18.40515 -17.85722 -17.51761 -16.87304 -16.59754 -15.84461 -15.43227 -15.04645 -14.99409 -14.46350 -14.39694 -13.60074 -13.37973 -13.30295 -13.02225 -12.97815 -12.83591 -12.67121 -12.48876 -12.28575 -12.12527 -11.92901 -11.74486 -11.65790 -11.41417 -11.15498 -10.52597 -10.25292 -9.96292 -9.08124 -8.06596 -6.25313 1.35349 1.40189 1.47652 1.65351 2.39427 2.41520 3.14651 3.20127 3.67652 3.96151 4.11299 4.20001 4.35827 4.45081 4.60431 4.72946 4.79511 4.85464 4.89158 5.05899 5.11114 5.13875 5.15791 5.18831 5.23667 5.28601 5.47474 5.54314 5.58545 5.70486 5.92703 6.01628 6.14894 6.28061 6.32688 6.52136 6.92008 7.31550 7.45412 8.91866 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.009134 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.216279 B = 3064.819852 C = 3269.852466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.146 4.146 4 C 0.079 3.921 5 H 0.048 0.952 6 C 0.533 3.467 7 O -0.580 6.580 8 N -0.709 5.709 9 C 0.120 3.880 10 C 0.035 3.965 11 N -0.515 5.515 12 C 0.209 3.791 13 H 0.019 0.981 14 C -0.113 4.113 15 C -0.550 4.550 16 H 0.048 0.952 17 C 0.028 3.972 18 N -0.908 5.908 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.285 1.285 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.406 0.594 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.025 0.975 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 2.387 7.899 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.093 4.093 3 C -0.204 4.204 4 C -0.033 4.033 5 H 0.066 0.934 6 C 0.320 3.680 7 O -0.460 6.460 8 N -0.361 5.361 9 C -0.004 4.004 10 C -0.093 4.093 11 N -0.240 5.240 12 C 0.102 3.898 13 H 0.037 0.963 14 C -0.171 4.171 15 C -0.589 4.589 16 H 0.066 0.934 17 C -0.173 4.173 18 N -0.547 5.547 19 Si 0.767 3.233 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.212 1.212 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.243 0.757 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.186 2.737 7.501 10.742 hybrid contribution 2.210 -0.137 0.241 2.227 sum -4.976 2.600 7.742 9.564 Atomic orbital electron populations 1.21618 0.93719 1.01724 1.01083 1.20909 0.97239 0.95693 0.95427 1.22002 1.00109 0.95747 1.02519 1.21560 0.97575 0.90589 0.93585 0.93415 1.20160 0.76706 0.86709 0.84448 1.90583 1.59244 1.15196 1.81013 1.45513 1.62410 1.08591 1.19561 1.21713 1.00671 0.78074 0.99941 1.22418 0.96715 1.00621 0.89550 1.63021 1.56376 0.99895 1.04728 1.19182 0.89674 0.91940 0.89036 0.96298 1.21556 0.97163 0.97480 1.00912 1.21906 0.94901 1.38326 1.03776 0.93379 1.25495 1.01736 0.95126 0.94911 1.70001 1.35765 1.39546 1.09353 0.85788 0.81819 0.77732 0.77955 1.19906 1.20436 1.21160 0.93652 0.92071 0.92388 0.91937 0.90412 0.94544 0.92068 0.75729 0.89731 0.87423 0.88611 0.95661 0.94714 0.92733 0.94784 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.76 71.98 0.63 -3.49 16 2 C -0.07 -2.77 2.61 -10.79 -0.03 -2.80 16 3 C -0.15 -5.16 8.65 71.98 0.62 -4.53 16 4 C 0.08 3.10 1.58 44.03 0.07 3.17 16 5 H 0.05 2.18 6.94 -2.39 -0.02 2.16 16 6 C 0.53 18.86 6.07 87.68 0.53 19.40 16 7 O -0.58 -22.63 13.88 -3.01 -0.04 -22.68 16 8 N -0.71 -19.31 5.52 -466.10 -2.57 -21.88 16 9 C 0.12 2.83 7.39 86.47 0.64 3.46 16 10 C 0.04 1.18 4.76 86.24 0.41 1.59 16 11 N -0.52 -19.94 3.96 -854.70 -3.38 -23.32 16 12 C 0.21 9.70 2.20 44.17 0.10 9.79 16 13 H 0.02 1.00 6.00 -2.39 -0.01 0.99 16 14 C -0.11 -5.02 8.64 71.98 0.62 -4.40 16 15 C -0.55 -28.11 7.08 25.60 0.18 -27.93 16 16 H 0.05 2.49 5.89 -2.91 -0.02 2.48 16 17 C 0.03 1.47 5.30 84.65 0.45 1.92 16 18 N -0.91 -49.75 11.41 21.45 0.24 -49.51 16 19 Si 0.94 42.38 29.54 68.60 2.03 44.40 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 23 H 0.04 1.51 6.59 -2.39 -0.02 1.50 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.97 7.84 -2.38 -0.02 1.95 16 26 H 0.06 2.64 6.14 -2.39 -0.01 2.63 16 27 H 0.08 2.85 5.58 -2.39 -0.01 2.83 16 28 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 29 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.41 9.03 8.84 -92.71 -0.82 8.21 16 31 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 3.13 6.21 -2.38 -0.01 3.11 16 34 H 0.03 0.94 6.59 -2.39 -0.02 0.93 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 2.72 6.31 -2.39 -0.02 2.71 16 37 H 0.03 1.43 6.68 -2.39 -0.02 1.41 16 38 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -59.08 285.42 0.74 -58.34 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.24 Total: 18.46 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 4.23 Total: -3.82 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -5.71 Total: -94.71 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.04 Total: -22.68 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -59.08 0.74 -58.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.547 kcal (2) G-P(sol) polarization free energy of solvation -59.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds