Wall clock time and date at job start Mon Mar 30 2020 04:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 120.00027 * 2 1 4 4 N 1.34777 * 119.99813 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.62823 * 355.04592 * 4 2 1 6 6 C 1.53200 * 108.77284 * 126.39319 * 5 4 2 7 7 C 1.53037 * 109.31015 * 54.63601 * 6 5 4 8 8 C 1.53045 * 109.53675 * 298.63116 * 7 6 5 9 9 H 1.08995 * 109.49869 * 301.41262 * 8 7 6 10 10 C 1.53008 * 109.49515 * 181.31895 * 8 7 6 11 11 N 1.46894 * 109.46913 * 175.00070 * 10 8 7 12 12 C 1.46901 * 110.99979 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.46976 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00317 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99886 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99916 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47121 * 89.99909 * 17 15 13 19 19 H 1.48509 * 109.46916 * 209.99587 * 17 15 13 20 20 H 1.48496 * 109.47068 * 329.99364 * 17 15 13 21 21 C 1.46926 * 120.63440 * 175.04964 * 4 2 1 22 22 H 1.09002 * 109.47299 * 185.39282 * 1 2 3 23 23 H 1.09001 * 109.47244 * 305.39059 * 1 2 3 24 24 H 1.09008 * 109.46765 * 65.38904 * 1 2 3 25 25 H 1.09001 * 109.58965 * 6.60529 * 5 4 2 26 26 H 1.09005 * 109.58957 * 246.17587 * 5 4 2 27 27 H 1.08999 * 109.49672 * 294.67961 * 6 5 4 28 28 H 1.09001 * 109.51968 * 174.59795 * 6 5 4 29 29 H 1.09003 * 109.45760 * 178.61259 * 7 6 5 30 30 H 1.09001 * 109.45343 * 58.64762 * 7 6 5 31 31 H 1.08999 * 109.47320 * 295.00330 * 10 8 7 32 32 H 1.09004 * 109.46726 * 55.00221 * 10 8 7 33 33 H 1.00901 * 111.00059 * 303.95493 * 11 10 8 34 34 H 1.09002 * 109.46632 * 299.99796 * 12 11 10 35 35 H 1.08991 * 109.47452 * 60.00026 * 12 11 10 36 36 H 0.97003 * 120.00195 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.59099 * 113.81868 * 21 4 2 38 38 H 1.09010 * 109.57894 * 353.39198 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4643 -2.4452 0.1103 6 6 1.8850 -3.3479 -1.0538 7 6 3.4096 -3.4811 -1.0655 8 6 4.0422 -2.1026 -1.2701 9 1 3.6878 -1.6754 -2.2082 10 6 5.5653 -2.2413 -1.3145 11 7 6.1665 -0.9387 -1.6299 12 6 7.6316 -1.0337 -1.6816 13 6 8.2115 0.3188 -2.0062 14 1 7.5573 1.1644 -2.1592 15 6 9.5774 0.4766 -2.1089 16 7 10.3741 -0.5531 -1.9231 17 14 10.2963 2.1530 -2.5120 18 1 10.5549 2.8964 -1.2528 19 1 11.5704 1.9796 -3.2550 20 1 9.3352 2.9155 -3.3486 21 6 3.6459 -1.1859 -0.1086 22 1 -0.3634 -1.0231 0.0966 23 1 -0.3634 0.5952 0.8378 24 1 -0.3633 0.4280 -0.9344 25 1 0.3899 -2.2669 0.0645 26 1 1.7171 -2.9260 1.0553 27 1 1.5509 -2.9089 -1.9938 28 1 1.4347 -4.3331 -0.9319 29 1 3.7100 -4.1428 -1.8779 30 1 3.7449 -3.8971 -0.1154 31 1 5.9274 -2.5835 -0.3451 32 1 5.8420 -2.9645 -2.0817 33 1 5.7977 -0.5697 -2.4936 34 1 8.0083 -1.3677 -0.7149 35 1 7.9224 -1.7483 -2.4515 36 1 11.3350 -0.4421 -1.9950 37 1 4.0767 -1.5639 0.8186 38 1 4.0110 -0.1766 -0.2987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260323668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:10 Heat of formation + Delta-G solvation = -45.738604 kcal Electronic energy + Delta-G solvation = -17414.541552 eV Core-core repulsion = 14677.336919 eV Total energy + Delta-G solvation = -2737.204633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12424 -37.66386 -35.40395 -33.25498 -32.23750 -31.21198 -29.66519 -26.87054 -25.13492 -24.34788 -22.14738 -21.11574 -20.29425 -18.92437 -17.17293 -16.34038 -15.97640 -15.42757 -14.79064 -14.69380 -14.26563 -14.25113 -13.57971 -13.39880 -13.28426 -12.88769 -12.49804 -12.40708 -12.08116 -11.87280 -11.59668 -11.19083 -11.09389 -10.91197 -10.73563 -10.59523 -10.43922 -10.36329 -9.82258 -9.64586 -9.13020 -8.57837 -8.43368 -7.25382 -5.99492 -4.00926 2.68451 3.06066 3.36411 3.41705 3.46565 4.45371 4.50458 4.56902 4.74824 4.80265 5.04435 5.06447 5.18027 5.26795 5.31177 5.36678 5.53488 5.58933 5.67515 5.72777 5.79951 5.88022 5.96889 5.98805 6.17179 6.28274 6.46493 6.51260 6.65519 7.27439 7.44922 7.47737 7.83118 8.16306 8.24822 8.42471 8.64974 9.08700 9.64047 11.11721 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031150 B = 0.004941 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.669657 B = 5665.839163 C = 6418.897980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.507 3.493 3 O -0.542 6.542 4 N -0.615 5.615 5 C 0.100 3.900 6 C -0.134 4.134 7 C -0.116 4.116 8 C -0.096 4.096 9 H 0.069 0.931 10 C 0.066 3.934 11 N -0.689 5.689 12 C 0.194 3.806 13 C -0.513 4.513 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.124 3.876 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.328 0.672 34 H 0.027 0.973 35 H -0.015 1.015 36 H 0.261 0.739 37 H 0.063 0.937 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.614 -7.591 3.068 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.296 3.704 3 O -0.419 6.419 4 N -0.349 5.349 5 C -0.023 4.023 6 C -0.172 4.172 7 C -0.154 4.154 8 C -0.116 4.116 9 H 0.088 0.912 10 C -0.065 4.065 11 N -0.320 5.320 12 C 0.068 3.932 13 C -0.551 4.551 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C 0.002 3.998 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.145 0.855 34 H 0.045 0.955 35 H 0.003 0.997 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.097 -6.848 3.736 21.558 hybrid contribution 0.683 0.153 -1.058 1.269 sum -19.414 -6.695 2.678 20.710 Atomic orbital electron populations 1.22040 0.92514 1.04212 1.05107 1.20748 0.90386 0.83356 0.75954 1.90759 1.70519 1.30976 1.49600 1.48292 1.08158 1.05696 1.72720 1.21892 0.97111 0.84386 0.98862 1.21912 0.96983 0.99507 0.98790 1.21572 0.94330 0.97217 1.02308 1.21524 0.96130 0.94928 0.99011 0.91249 1.21874 0.91725 0.92514 1.00372 1.60672 1.09386 1.22332 1.39574 1.19544 0.80897 0.96671 0.96130 1.21212 0.91522 0.95198 1.47188 0.91916 1.24985 0.97105 0.96981 0.95509 1.69965 1.03693 1.29918 1.50367 0.86481 0.78323 0.84052 0.78460 1.20586 1.21344 1.19823 1.21648 0.77401 1.03167 0.97575 0.90073 0.89045 0.88919 0.89366 0.91358 0.91543 0.90872 0.91672 0.91667 0.91666 0.96065 0.85537 0.95461 0.99676 0.92970 0.91834 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 10.12 36.01 0.36 -1.14 16 2 C 0.51 6.99 7.80 -10.98 -0.09 6.90 16 3 O -0.54 -10.30 16.53 5.56 0.09 -10.21 16 4 N -0.61 -7.69 2.97 -172.76 -0.51 -8.21 16 5 C 0.10 0.83 6.36 -3.71 -0.02 0.81 16 6 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 7 C -0.12 -1.23 5.17 -26.69 -0.14 -1.37 16 8 C -0.10 -1.35 2.48 -90.50 -0.22 -1.58 16 9 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 10 C 0.07 1.15 5.08 -3.82 -0.02 1.13 16 11 N -0.69 -15.10 6.06 -115.06 -0.70 -15.80 16 12 C 0.19 5.21 5.44 -4.97 -0.03 5.19 16 13 C -0.51 -14.98 9.32 -34.44 -0.32 -15.30 16 14 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 17 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.12 1.87 5.52 -3.71 -0.02 1.85 16 22 H 0.08 0.45 5.10 -51.93 -0.26 0.19 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.09 0.51 5.04 -51.93 -0.26 0.25 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.33 7.01 8.72 -39.29 -0.34 6.67 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 35 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 2.05 6.82 -51.92 -0.35 1.69 16 LS Contribution 306.19 15.07 4.61 4.61 Total: -1.00 -33.73 306.19 -7.81 -41.54 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.26 Total: 0.67 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -0.75 Total: -3.25 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.47 Total: -50.69 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.73 -7.81 -41.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.197 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds