Wall clock time and date at job start Mon Mar 30 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 120.00027 * 2 1 4 4 N 1.34777 * 119.99813 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.62823 * 355.04592 * 4 2 1 6 6 C 1.53200 * 108.77284 * 126.39319 * 5 4 2 7 7 C 1.53037 * 109.31015 * 54.63601 * 6 5 4 8 8 C 1.53045 * 109.53675 * 298.63116 * 7 6 5 9 9 H 1.08995 * 109.49869 * 301.41262 * 8 7 6 10 10 C 1.53008 * 109.49515 * 181.31895 * 8 7 6 11 11 N 1.46894 * 109.46913 * 175.00070 * 10 8 7 12 12 C 1.46901 * 110.99979 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.46976 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00317 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99886 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99916 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47121 * 89.99909 * 17 15 13 19 19 H 1.48509 * 109.46916 * 209.99587 * 17 15 13 20 20 H 1.48496 * 109.47068 * 329.99364 * 17 15 13 21 21 C 1.46926 * 120.63440 * 175.04964 * 4 2 1 22 22 H 1.09002 * 109.47299 * 185.39282 * 1 2 3 23 23 H 1.09001 * 109.47244 * 305.39059 * 1 2 3 24 24 H 1.09008 * 109.46765 * 65.38904 * 1 2 3 25 25 H 1.09001 * 109.58965 * 6.60529 * 5 4 2 26 26 H 1.09005 * 109.58957 * 246.17587 * 5 4 2 27 27 H 1.08999 * 109.49672 * 294.67961 * 6 5 4 28 28 H 1.09001 * 109.51968 * 174.59795 * 6 5 4 29 29 H 1.09003 * 109.45760 * 178.61259 * 7 6 5 30 30 H 1.09001 * 109.45343 * 58.64762 * 7 6 5 31 31 H 1.08999 * 109.47320 * 295.00330 * 10 8 7 32 32 H 1.09004 * 109.46726 * 55.00221 * 10 8 7 33 33 H 1.00901 * 111.00059 * 303.95493 * 11 10 8 34 34 H 1.09002 * 109.46632 * 299.99796 * 12 11 10 35 35 H 1.08991 * 109.47452 * 60.00026 * 12 11 10 36 36 H 0.97003 * 120.00195 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.59099 * 113.81868 * 21 4 2 38 38 H 1.09010 * 109.57894 * 353.39198 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4643 -2.4452 0.1103 6 6 1.8850 -3.3479 -1.0538 7 6 3.4096 -3.4811 -1.0655 8 6 4.0422 -2.1026 -1.2701 9 1 3.6878 -1.6754 -2.2082 10 6 5.5653 -2.2413 -1.3145 11 7 6.1665 -0.9387 -1.6299 12 6 7.6316 -1.0337 -1.6816 13 6 8.2115 0.3188 -2.0062 14 1 7.5573 1.1644 -2.1592 15 6 9.5774 0.4766 -2.1089 16 7 10.3741 -0.5531 -1.9231 17 14 10.2963 2.1530 -2.5120 18 1 10.5549 2.8964 -1.2528 19 1 11.5704 1.9796 -3.2550 20 1 9.3352 2.9155 -3.3486 21 6 3.6459 -1.1859 -0.1086 22 1 -0.3634 -1.0231 0.0966 23 1 -0.3634 0.5952 0.8378 24 1 -0.3633 0.4280 -0.9344 25 1 0.3899 -2.2669 0.0645 26 1 1.7171 -2.9260 1.0553 27 1 1.5509 -2.9089 -1.9938 28 1 1.4347 -4.3331 -0.9319 29 1 3.7100 -4.1428 -1.8779 30 1 3.7449 -3.8971 -0.1154 31 1 5.9274 -2.5835 -0.3451 32 1 5.8420 -2.9645 -2.0817 33 1 5.7977 -0.5697 -2.4936 34 1 8.0083 -1.3677 -0.7149 35 1 7.9224 -1.7483 -2.4515 36 1 11.3350 -0.4421 -1.9950 37 1 4.0767 -1.5639 0.8186 38 1 4.0110 -0.1766 -0.2987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:09 Heat of formation + Delta-G solvation = -70.337258 kcal Electronic energy + Delta-G solvation = -17415.608230 eV Core-core repulsion = 14677.336919 eV Total energy + Delta-G solvation = -2738.271310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16303 -38.85193 -36.99757 -34.98183 -33.74491 -32.36462 -30.65509 -28.70459 -26.11746 -25.87070 -23.71910 -22.63984 -21.45501 -19.87843 -18.59859 -18.09493 -17.10934 -16.75598 -16.43356 -16.04674 -15.66209 -15.42919 -14.84099 -14.70179 -14.27074 -14.10593 -13.98464 -13.66654 -13.30093 -13.17068 -12.95747 -12.86216 -12.64904 -12.40277 -12.13155 -11.94906 -11.81160 -11.59667 -11.48177 -11.17991 -10.72099 -10.68495 -9.62007 -9.12428 -8.25736 -6.36785 1.38144 1.40499 1.51792 1.64866 2.10651 2.37774 3.07288 3.46164 3.73038 3.79455 3.88879 4.06475 4.14762 4.23036 4.39702 4.50503 4.63565 4.65567 4.69291 4.76256 4.78429 4.91346 4.94720 5.05935 5.12272 5.15638 5.17277 5.23931 5.34013 5.47052 5.57906 5.58887 5.99390 6.41329 6.51605 6.68746 6.84616 7.22474 7.34120 8.85884 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031150 B = 0.004941 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.669657 B = 5665.839163 C = 6418.897980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.494 3.506 3 O -0.609 6.609 4 N -0.612 5.612 5 C 0.094 3.906 6 C -0.127 4.127 7 C -0.113 4.113 8 C -0.082 4.082 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.692 5.692 12 C 0.210 3.790 13 C -0.539 4.539 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.972 3.028 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.266 1.266 21 C 0.127 3.873 22 H 0.117 0.883 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.124 0.876 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.331 0.669 34 H 0.000 1.000 35 H -0.037 1.037 36 H 0.266 0.734 37 H 0.061 0.939 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.895 -8.470 3.002 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.285 3.715 3 O -0.491 6.491 4 N -0.345 5.345 5 C -0.027 4.027 6 C -0.165 4.165 7 C -0.151 4.151 8 C -0.102 4.102 9 H 0.080 0.920 10 C -0.064 4.064 11 N -0.322 5.322 12 C 0.082 3.918 13 C -0.577 4.577 14 H 0.077 0.923 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.796 3.204 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.191 1.191 21 C 0.004 3.996 22 H 0.135 0.865 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.141 0.859 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.148 0.852 34 H 0.019 0.981 35 H -0.019 1.019 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.424 -7.783 3.673 24.019 hybrid contribution 1.383 0.353 -1.007 1.747 sum -21.041 -7.430 2.666 22.473 Atomic orbital electron populations 1.22054 0.87701 1.06821 1.05981 1.21844 0.92667 0.82533 0.74459 1.90726 1.72250 1.33399 1.52726 1.48430 1.06993 1.07421 1.71654 1.22285 0.98617 0.82172 0.99644 1.21910 0.94696 1.01265 0.98629 1.21575 0.96282 0.94354 1.02917 1.21381 0.93407 0.97297 0.98115 0.92046 1.21976 0.94138 0.90279 0.99980 1.60550 1.06734 1.25257 1.39653 1.19187 0.83746 0.95230 0.93658 1.21540 0.92256 0.95935 1.47951 0.92326 1.25925 0.97393 1.01257 0.94907 1.70077 1.04214 1.32228 1.50743 0.85344 0.77713 0.78811 0.78498 1.19902 1.20170 1.19052 1.21331 0.79818 1.00648 0.97823 0.86509 0.88151 0.87963 0.85856 0.90024 0.91693 0.87452 0.91013 0.91038 0.92108 0.95701 0.85231 0.98149 1.01924 0.92497 0.92089 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.12 71.24 0.72 -1.58 16 2 C 0.49 13.32 7.80 87.66 0.68 14.00 16 3 O -0.61 -24.20 16.53 -3.03 -0.05 -24.25 16 4 N -0.61 -14.61 2.97 -818.88 -2.43 -17.04 16 5 C 0.09 1.19 6.36 86.37 0.55 1.74 16 6 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 7 C -0.11 -2.14 5.17 30.62 0.16 -1.98 16 8 C -0.08 -2.30 2.48 -10.71 -0.03 -2.33 16 9 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 10 C 0.07 2.39 5.08 86.31 0.44 2.82 16 11 N -0.69 -31.77 6.06 -517.93 -3.14 -34.91 16 12 C 0.21 11.79 5.44 85.56 0.47 12.25 16 13 C -0.54 -32.44 9.32 25.60 0.24 -32.20 16 14 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 15 C 0.00 0.21 5.46 84.66 0.46 0.67 16 16 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 17 Si 0.97 46.24 29.54 68.60 2.03 48.26 16 18 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.13 3.95 5.52 86.36 0.48 4.43 16 22 H 0.12 0.71 5.10 -2.39 -0.01 0.69 16 23 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.12 0.72 5.04 -2.39 -0.01 0.71 16 26 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.33 14.81 8.72 -89.69 -0.78 14.02 16 34 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 35 H -0.04 -2.19 8.14 -2.39 -0.02 -2.21 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 2.48 6.82 -2.38 -0.02 2.46 16 Total: -1.00 -77.74 306.19 1.29 -76.45 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.25 Total: 12.62 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 4.35 Total: -3.57 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -5.29 Total: -109.51 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.05 Total: -24.25 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -77.74 1.29 -76.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.114 kcal (2) G-P(sol) polarization free energy of solvation -77.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds