Wall clock time and date at job start Mon Mar 30 2020 04:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 120.00596 * 2 1 4 4 N 1.34787 * 119.99762 * 180.02562 * 2 1 3 5 5 C 1.46926 * 120.62684 * 354.38050 * 4 2 1 6 6 C 1.53187 * 108.77485 * 233.33413 * 5 4 2 7 7 C 1.53039 * 109.31677 * 305.36943 * 6 5 4 8 8 C 1.53040 * 109.53853 * 61.36311 * 7 6 5 9 9 H 1.09002 * 109.49688 * 58.61850 * 8 7 6 10 10 C 1.53003 * 109.50108 * 178.68666 * 8 7 6 11 11 N 1.46903 * 109.47182 * 185.00208 * 10 8 7 12 12 C 1.46894 * 110.99814 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47053 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00036 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00221 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99633 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00188 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47423 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47287 * 119.99840 * 17 15 13 20 20 H 1.48499 * 109.47198 * 240.00059 * 17 15 13 21 21 C 1.46923 * 120.63054 * 174.10588 * 4 2 1 22 22 H 1.08993 * 109.47337 * 184.88135 * 1 2 3 23 23 H 1.09005 * 109.46401 * 304.87902 * 1 2 3 24 24 H 1.08994 * 109.46941 * 64.87557 * 1 2 3 25 25 H 1.08992 * 109.58979 * 353.12338 * 5 4 2 26 26 H 1.09005 * 109.57919 * 113.55148 * 5 4 2 27 27 H 1.09000 * 109.49858 * 65.31807 * 6 5 4 28 28 H 1.08999 * 109.50021 * 185.38555 * 6 5 4 29 29 H 1.09000 * 109.46637 * 181.38509 * 7 6 5 30 30 H 1.09000 * 109.46282 * 301.36219 * 7 6 5 31 31 H 1.09000 * 109.46621 * 304.99850 * 10 8 7 32 32 H 1.08998 * 109.46762 * 65.00066 * 10 8 7 33 33 H 1.00904 * 110.99819 * 303.95177 * 11 10 8 34 34 H 1.09000 * 109.47538 * 300.00105 * 12 11 10 35 35 H 1.09003 * 109.47362 * 59.99790 * 12 11 10 36 36 H 0.97006 * 119.99737 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.58710 * 246.45357 * 21 4 2 38 38 H 1.09007 * 109.58426 * 6.87874 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4654 -2.4447 0.1227 6 6 2.0769 -3.2428 1.2785 7 6 3.5839 -3.3855 1.0536 8 6 4.2313 -1.9990 1.0283 9 1 4.0318 -1.4872 1.9698 10 6 5.7423 -2.1442 0.8362 11 7 6.3772 -0.8230 0.9316 12 6 7.8317 -0.9238 0.7522 13 6 8.4468 0.4481 0.8558 14 1 7.8199 1.3088 1.0363 15 6 9.8099 0.6046 0.7190 16 7 10.5732 -0.4435 0.4986 17 14 10.5725 2.3048 0.8480 18 1 9.5063 3.3079 1.0979 19 1 11.5460 2.3269 1.9691 20 1 11.2712 2.6316 -0.4209 21 6 3.6443 -1.1868 -0.1304 22 1 -0.3633 -1.0239 0.0874 23 1 -0.3632 0.5877 0.8431 24 1 -0.3633 0.4363 -0.9304 25 1 0.4117 -2.2551 0.3268 26 1 1.5645 -3.0097 -0.8042 27 1 1.8973 -2.7190 2.2174 28 1 1.6196 -4.2313 1.3201 29 1 4.0177 -3.9741 1.8620 30 1 3.7633 -3.8871 0.1026 31 1 6.1456 -2.7979 1.6095 32 1 5.9440 -2.5743 -0.1449 33 1 5.9743 -0.1793 0.2671 34 1 8.2493 -1.5689 1.5252 35 1 8.0484 -1.3456 -0.2292 36 1 11.5322 -0.3334 0.4027 37 1 3.9209 -1.6493 -1.0778 38 1 4.0280 -0.1672 -0.0932 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260323671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:12 Heat of formation + Delta-G solvation = -45.655961 kcal Electronic energy + Delta-G solvation = -17426.646283 eV Core-core repulsion = 14689.445234 eV Total energy + Delta-G solvation = -2737.201049 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.19988 -37.71579 -35.43037 -33.27569 -32.28442 -31.20013 -29.70161 -26.86568 -25.20592 -24.46999 -22.18008 -21.05178 -20.25959 -19.02042 -17.25625 -16.36608 -16.03630 -15.47527 -14.89750 -14.65295 -14.42785 -14.02484 -13.64053 -13.32909 -13.20943 -13.13040 -12.65830 -12.48337 -12.14614 -11.97473 -11.45789 -11.17188 -11.11079 -10.88803 -10.80719 -10.60414 -10.42807 -10.34802 -9.85105 -9.70349 -9.10164 -8.63969 -8.44338 -7.25281 -5.99408 -4.00727 2.62001 2.97430 3.35018 3.41948 3.48837 4.43964 4.48303 4.53032 4.73785 4.79231 5.00142 5.06149 5.16427 5.24139 5.25382 5.36764 5.45628 5.55643 5.65664 5.70914 5.75711 5.79310 5.93802 5.96983 6.12475 6.22733 6.39336 6.50124 6.61324 7.28270 7.38950 7.45464 7.83932 8.16344 8.17849 8.42692 8.65813 9.09222 9.64278 11.11852 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.004941 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.862153 B = 5665.585856 C = 6424.391667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.508 3.492 3 O -0.542 6.542 4 N -0.612 5.612 5 C 0.102 3.898 6 C -0.134 4.134 7 C -0.115 4.115 8 C -0.098 4.098 9 H 0.081 0.919 10 C 0.067 3.933 11 N -0.691 5.691 12 C 0.193 3.807 13 C -0.512 4.512 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.113 3.887 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.019 0.981 33 H 0.329 0.671 34 H 0.028 0.972 35 H -0.014 1.014 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.165 -7.572 -1.225 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.296 3.704 3 O -0.419 6.419 4 N -0.346 5.346 5 C -0.021 4.021 6 C -0.172 4.172 7 C -0.153 4.153 8 C -0.118 4.118 9 H 0.100 0.900 10 C -0.064 4.064 11 N -0.322 5.322 12 C 0.067 3.933 13 C -0.551 4.551 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.010 4.010 22 H 0.100 0.900 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.146 0.854 34 H 0.046 0.954 35 H 0.004 0.996 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.613 -7.058 -0.567 21.795 hybrid contribution 0.655 0.483 -0.896 1.210 sum -19.958 -6.576 -1.463 21.064 Atomic orbital electron populations 1.22031 0.92281 1.04309 1.05164 1.20787 0.90484 0.83278 0.75820 1.90757 1.70504 1.30991 1.49612 1.48197 1.07776 1.05946 1.72726 1.21885 0.96582 0.84601 0.99028 1.21913 0.96624 1.00071 0.98612 1.21557 0.94390 0.97150 1.02227 1.21551 0.95443 0.95358 0.99422 0.90013 1.21865 0.91708 0.93636 0.99175 1.60690 1.07455 1.07299 1.56790 1.19555 0.81267 0.97561 0.94947 1.21256 0.92129 0.93441 1.48263 0.91862 1.24988 0.97214 0.97070 0.95335 1.69978 1.04931 1.29141 1.49874 0.86428 0.79171 0.84264 0.77504 1.19580 1.21003 1.21103 1.21747 0.78353 1.03043 0.97808 0.90047 0.88938 0.88870 0.89324 0.91400 0.91390 0.90788 0.91379 0.91880 0.91454 0.96335 0.85409 0.95433 0.99642 0.93027 0.91891 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 10.11 36.01 0.36 -1.08 16 2 C 0.51 6.79 7.79 -10.98 -0.09 6.70 16 3 O -0.54 -10.03 16.52 5.56 0.09 -9.94 16 4 N -0.61 -7.42 2.97 -172.77 -0.51 -7.94 16 5 C 0.10 0.82 6.30 -3.71 -0.02 0.80 16 6 C -0.13 -1.11 6.08 -26.61 -0.16 -1.27 16 7 C -0.12 -1.23 5.17 -26.69 -0.14 -1.37 16 8 C -0.10 -1.40 2.55 -90.50 -0.23 -1.63 16 9 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 10 C 0.07 1.19 5.15 -3.82 -0.02 1.17 16 11 N -0.69 -15.45 6.49 -115.06 -0.75 -16.20 16 12 C 0.19 5.24 5.44 -4.98 -0.03 5.21 16 13 C -0.51 -15.09 9.32 -34.44 -0.32 -15.41 16 14 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 17 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 C 0.11 1.63 5.36 -3.71 -0.02 1.61 16 22 H 0.08 0.43 5.15 -51.93 -0.27 0.16 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.49 5.14 -51.93 -0.27 0.23 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.33 7.21 7.12 -39.29 -0.28 6.93 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H -0.01 -0.40 8.14 -51.93 -0.42 -0.83 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.74 5.81 -51.92 -0.30 1.44 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -34.04 304.03 -7.79 -41.83 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.16 Total: 0.78 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -0.76 Total: -3.75 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.52 Total: -50.88 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.04 -7.79 -41.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.825 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds