Wall clock time and date at job start Mon Mar 30 2020 04:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 120.00596 * 2 1 4 4 N 1.34787 * 119.99762 * 180.02562 * 2 1 3 5 5 C 1.46926 * 120.62684 * 354.38050 * 4 2 1 6 6 C 1.53187 * 108.77485 * 233.33413 * 5 4 2 7 7 C 1.53039 * 109.31677 * 305.36943 * 6 5 4 8 8 C 1.53040 * 109.53853 * 61.36311 * 7 6 5 9 9 H 1.09002 * 109.49688 * 58.61850 * 8 7 6 10 10 C 1.53003 * 109.50108 * 178.68666 * 8 7 6 11 11 N 1.46903 * 109.47182 * 185.00208 * 10 8 7 12 12 C 1.46894 * 110.99814 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47053 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00036 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00221 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99633 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00188 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47423 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47287 * 119.99840 * 17 15 13 20 20 H 1.48499 * 109.47198 * 240.00059 * 17 15 13 21 21 C 1.46923 * 120.63054 * 174.10588 * 4 2 1 22 22 H 1.08993 * 109.47337 * 184.88135 * 1 2 3 23 23 H 1.09005 * 109.46401 * 304.87902 * 1 2 3 24 24 H 1.08994 * 109.46941 * 64.87557 * 1 2 3 25 25 H 1.08992 * 109.58979 * 353.12338 * 5 4 2 26 26 H 1.09005 * 109.57919 * 113.55148 * 5 4 2 27 27 H 1.09000 * 109.49858 * 65.31807 * 6 5 4 28 28 H 1.08999 * 109.50021 * 185.38555 * 6 5 4 29 29 H 1.09000 * 109.46637 * 181.38509 * 7 6 5 30 30 H 1.09000 * 109.46282 * 301.36219 * 7 6 5 31 31 H 1.09000 * 109.46621 * 304.99850 * 10 8 7 32 32 H 1.08998 * 109.46762 * 65.00066 * 10 8 7 33 33 H 1.00904 * 110.99819 * 303.95177 * 11 10 8 34 34 H 1.09000 * 109.47538 * 300.00105 * 12 11 10 35 35 H 1.09003 * 109.47362 * 59.99790 * 12 11 10 36 36 H 0.97006 * 119.99737 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.58710 * 246.45357 * 21 4 2 38 38 H 1.09007 * 109.58426 * 6.87874 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4654 -2.4447 0.1227 6 6 2.0769 -3.2428 1.2785 7 6 3.5839 -3.3855 1.0536 8 6 4.2313 -1.9990 1.0283 9 1 4.0318 -1.4872 1.9698 10 6 5.7423 -2.1442 0.8362 11 7 6.3772 -0.8230 0.9316 12 6 7.8317 -0.9238 0.7522 13 6 8.4468 0.4481 0.8558 14 1 7.8199 1.3088 1.0363 15 6 9.8099 0.6046 0.7190 16 7 10.5732 -0.4435 0.4986 17 14 10.5725 2.3048 0.8480 18 1 9.5063 3.3079 1.0979 19 1 11.5460 2.3269 1.9691 20 1 11.2712 2.6316 -0.4209 21 6 3.6443 -1.1868 -0.1304 22 1 -0.3633 -1.0239 0.0874 23 1 -0.3632 0.5877 0.8431 24 1 -0.3633 0.4363 -0.9304 25 1 0.4117 -2.2551 0.3268 26 1 1.5645 -3.0097 -0.8042 27 1 1.8973 -2.7190 2.2174 28 1 1.6196 -4.2313 1.3201 29 1 4.0177 -3.9741 1.8620 30 1 3.7633 -3.8871 0.1026 31 1 6.1456 -2.7979 1.6095 32 1 5.9440 -2.5743 -0.1449 33 1 5.9743 -0.1793 0.2671 34 1 8.2493 -1.5689 1.5252 35 1 8.0484 -1.3456 -0.2292 36 1 11.5322 -0.3334 0.4027 37 1 3.9209 -1.6493 -1.0778 38 1 4.0280 -0.1672 -0.0932 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:12 Heat of formation + Delta-G solvation = -70.586842 kcal Electronic energy + Delta-G solvation = -17427.727368 eV Core-core repulsion = 14689.445234 eV Total energy + Delta-G solvation = -2738.282133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21156 -38.89338 -37.01074 -34.99835 -33.77626 -32.36396 -30.67451 -28.69815 -26.15535 -25.98767 -23.78817 -22.54402 -21.43103 -19.95547 -18.63365 -18.14167 -17.18288 -16.70497 -16.46217 -16.19060 -15.52243 -15.41557 -14.98886 -14.61462 -14.29704 -14.13246 -14.02460 -13.81835 -13.35165 -13.23990 -12.99683 -12.73768 -12.71194 -12.32833 -12.09008 -11.98749 -11.83221 -11.62893 -11.51173 -11.16494 -10.75451 -10.70063 -9.64598 -9.16132 -8.26602 -6.37764 1.37939 1.38508 1.53308 1.62089 2.05706 2.37455 3.06301 3.46145 3.63808 3.82920 3.86761 4.03996 4.09823 4.23097 4.35486 4.44342 4.58948 4.64749 4.67362 4.76244 4.78340 4.84786 4.89539 5.00735 5.08341 5.15937 5.18269 5.23656 5.30451 5.47290 5.53523 5.58497 5.98509 6.39054 6.47183 6.67135 6.82752 7.18843 7.33181 8.85246 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.004941 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.862153 B = 5665.585856 C = 6424.391667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.495 3.505 3 O -0.608 6.608 4 N -0.611 5.611 5 C 0.095 3.905 6 C -0.128 4.128 7 C -0.112 4.112 8 C -0.085 4.085 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.695 5.695 12 C 0.208 3.792 13 C -0.540 4.540 14 H 0.057 0.943 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.973 3.027 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.274 1.274 21 C 0.114 3.886 22 H 0.116 0.884 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.123 0.877 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.330 0.670 34 H 0.003 0.997 35 H -0.037 1.037 36 H 0.267 0.733 37 H 0.070 0.930 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.306 -8.420 -1.312 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.286 3.714 3 O -0.490 6.490 4 N -0.343 5.343 5 C -0.025 4.025 6 C -0.166 4.166 7 C -0.150 4.150 8 C -0.104 4.104 9 H 0.079 0.921 10 C -0.063 4.063 11 N -0.326 5.326 12 C 0.081 3.919 13 C -0.578 4.578 14 H 0.076 0.924 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.797 3.203 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.009 4.009 22 H 0.135 0.865 23 H 0.117 0.883 24 H 0.123 0.877 25 H 0.141 0.859 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.147 0.853 34 H 0.021 0.979 35 H -0.019 1.019 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.797 -7.964 -0.651 24.157 hybrid contribution 1.313 0.667 -0.872 1.711 sum -21.484 -7.297 -1.523 22.741 Atomic orbital electron populations 1.22051 0.87592 1.06856 1.06032 1.21866 0.92717 0.82484 0.74357 1.90725 1.72194 1.33370 1.52697 1.48356 1.06701 1.07578 1.71678 1.22276 0.97848 0.82536 0.99887 1.21915 0.94507 1.01918 0.98291 1.21560 0.96216 0.94199 1.03033 1.21394 0.92931 0.97881 0.98218 0.92096 1.21979 0.93999 0.91126 0.99240 1.60581 1.05136 1.09995 1.56894 1.19209 0.83993 0.96091 0.92651 1.21565 0.92931 0.94115 1.49187 0.92437 1.25929 0.97567 1.01548 0.94407 1.70085 1.05522 1.31515 1.50058 0.85283 0.78184 0.78757 0.78066 1.19231 1.19916 1.19926 1.21498 0.80569 1.00711 0.98137 0.86530 0.88312 0.87702 0.85916 0.89597 0.92109 0.87323 0.91047 0.90817 0.91758 0.95887 0.85257 0.97899 1.01948 0.92456 0.91177 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.11 71.24 0.72 -1.48 16 2 C 0.49 12.91 7.79 87.66 0.68 13.59 16 3 O -0.61 -23.48 16.52 -3.03 -0.05 -23.53 16 4 N -0.61 -14.00 2.97 -818.90 -2.43 -16.43 16 5 C 0.10 1.16 6.30 86.36 0.54 1.70 16 6 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 7 C -0.11 -2.16 5.17 30.62 0.16 -2.00 16 8 C -0.08 -2.42 2.55 -10.71 -0.03 -2.45 16 9 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 10 C 0.07 2.43 5.15 86.30 0.44 2.88 16 11 N -0.70 -32.62 6.49 -517.94 -3.36 -35.98 16 12 C 0.21 11.84 5.44 85.56 0.47 12.30 16 13 C -0.54 -32.78 9.32 25.60 0.24 -32.55 16 14 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 15 C 0.00 0.23 5.46 84.66 0.46 0.69 16 16 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 17 Si 0.97 46.38 29.54 68.60 2.03 48.40 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 C 0.11 3.36 5.36 86.36 0.46 3.83 16 22 H 0.12 0.65 5.15 -2.39 -0.01 0.64 16 23 H 0.10 1.23 8.14 -2.38 -0.02 1.22 16 24 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.12 0.68 5.14 -2.39 -0.01 0.67 16 26 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.33 15.37 7.12 -89.69 -0.64 14.73 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H -0.04 -2.23 8.14 -2.39 -0.02 -2.25 16 36 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 2.23 5.81 -2.38 -0.01 2.21 16 Total: -1.00 -78.04 304.03 1.20 -76.83 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.40 Total: 13.22 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 4.34 Total: -4.95 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -5.51 Total: -109.98 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.53 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -78.04 1.20 -76.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.246 kcal (2) G-P(sol) polarization free energy of solvation -78.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds