Wall clock time and date at job start Mon Mar 30 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99924 * 2 1 4 4 N 1.34776 * 120.00184 * 179.97438 * 2 1 3 5 5 C 1.47609 * 118.64555 * 0.02562 * 4 2 1 6 6 C 1.53941 * 112.14210 * 222.13204 * 5 4 2 7 7 C 1.50882 * 110.09657 * 40.56179 * 6 5 4 8 8 C 1.52570 * 109.35665 * 268.11148 * 7 6 5 9 9 C 1.47089 * 114.33046 * 85.01619 * 8 7 6 10 10 H 1.09002 * 109.32930 * 57.28746 * 9 8 7 11 11 N 1.46494 * 109.33077 * 176.94053 * 9 8 7 12 12 C 1.46498 * 119.99988 * 60.34952 * 11 9 8 13 13 C 1.36939 * 120.00262 * 240.34539 * 11 9 8 14 14 H 1.08000 * 119.99368 * 39.00856 * 13 11 9 15 15 C 1.38809 * 120.00107 * 219.01644 * 13 11 9 16 16 N 1.31617 * 120.00072 * 26.29370 * 15 13 11 17 17 Si 1.86802 * 119.99966 * 206.29244 * 15 13 11 18 18 H 1.48504 * 109.46993 * 0.02562 * 17 15 13 19 19 H 1.48491 * 109.47608 * 240.00054 * 17 15 13 20 20 H 1.48496 * 109.47288 * 119.99778 * 17 15 13 21 21 C 1.44668 * 118.81619 * 179.97438 * 4 2 1 22 22 H 1.09002 * 109.46892 * 239.99564 * 1 2 3 23 23 H 1.08994 * 109.47189 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46887 * 120.00271 * 1 2 3 25 25 H 1.09002 * 108.94610 * 101.44081 * 5 4 2 26 26 H 1.09007 * 108.87220 * 342.76948 * 5 4 2 27 27 H 1.09002 * 109.36741 * 280.37022 * 6 5 4 28 28 H 1.09003 * 109.26713 * 160.68465 * 6 5 4 29 29 H 1.09002 * 109.49317 * 148.14474 * 7 6 5 30 30 H 1.09005 * 109.51035 * 28.08325 * 7 6 5 31 31 H 1.08998 * 108.50662 * 323.75843 * 8 7 6 32 32 H 1.08997 * 108.51228 * 206.27061 * 8 7 6 33 33 H 1.09000 * 109.46975 * 275.28562 * 12 11 9 34 34 H 1.08997 * 109.47446 * 35.28417 * 12 11 9 35 35 H 1.09004 * 109.47139 * 155.29007 * 12 11 9 36 36 H 0.97001 * 120.00199 * 5.36485 * 16 15 13 37 37 H 1.09001 * 109.32125 * 329.11152 * 21 4 2 38 38 H 1.08997 * 109.61661 * 209.17015 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4129 -2.4277 0.0005 6 6 2.0137 -3.4732 0.9575 7 6 2.4635 -2.8085 2.2352 8 6 3.9293 -2.4054 2.1065 9 6 4.1449 -1.1019 1.4600 10 1 3.6091 -0.3313 2.0143 11 7 5.5766 -0.7918 1.4593 12 6 6.5184 -1.6814 0.7754 13 6 6.0346 0.3297 2.0978 14 1 5.6027 0.6280 3.0416 15 6 7.0539 1.0831 1.5318 16 7 7.2334 1.0733 0.2280 17 14 8.1707 2.1110 2.6207 18 1 7.7632 1.9502 4.0396 19 1 8.0615 3.5402 2.2328 20 1 9.5756 1.6593 2.4555 21 6 3.6273 -1.1372 -0.0001 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5139 -0.8899 25 1 1.4038 -2.8366 -1.0099 26 1 0.3880 -2.2162 0.3056 27 1 2.8679 -3.9524 0.4792 28 1 1.2593 -4.2255 1.1878 29 1 2.3492 -3.5039 3.0667 30 1 1.8570 -1.9212 2.4170 31 1 4.4487 -3.1690 1.5276 32 1 4.3684 -2.3739 3.1037 33 1 6.7974 -2.4971 1.4424 34 1 6.0488 -2.0887 -0.1199 35 1 7.4099 -1.1204 0.4949 36 1 6.6073 0.6028 -0.3443 37 1 3.9694 -0.2476 -0.5288 38 1 4.0115 -2.0263 -0.5000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260337161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:38 Heat of formation + Delta-G solvation = -17.560117 kcal Electronic energy + Delta-G solvation = -18648.968352 eV Core-core repulsion = 15912.985630 eV Total energy + Delta-G solvation = -2735.982722 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99323 -37.48012 -35.49312 -33.34161 -32.11330 -30.11044 -29.23122 -26.13211 -25.82166 -24.74386 -22.50517 -20.89368 -19.53425 -18.36231 -17.30864 -16.78829 -15.87006 -15.51546 -14.49481 -14.17382 -14.05114 -13.65142 -13.44585 -13.21430 -12.99974 -12.63336 -12.41814 -12.18944 -12.05736 -11.56868 -11.54193 -10.99340 -10.85285 -10.74578 -10.50171 -10.43763 -10.04098 -10.00866 -9.89965 -9.42383 -9.31291 -8.31375 -8.22836 -6.69400 -5.94413 -3.28694 2.97659 3.35415 3.56222 3.59550 3.73552 4.62090 4.73938 4.79965 4.96417 5.18308 5.24894 5.28478 5.40540 5.41477 5.51177 5.59822 5.70306 5.75972 5.85638 5.97431 6.01640 6.16057 6.26567 6.43535 6.46835 6.54941 6.61293 6.78577 6.84569 7.10802 7.18917 7.23674 7.72911 8.22882 8.57840 8.69225 9.23759 9.91030 10.36742 11.24579 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028367 B = 0.007964 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.815730 B = 3514.814138 C = 4020.474634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.495 3.505 3 O -0.532 6.532 4 N -0.604 5.604 5 C 0.108 3.892 6 C -0.130 4.130 7 C -0.111 4.111 8 C -0.126 4.126 9 C 0.165 3.835 10 H 0.062 0.938 11 N -0.590 5.590 12 C 0.119 3.881 13 C -0.352 4.352 14 H 0.049 0.951 15 C -0.017 4.017 16 N -0.903 5.903 17 Si 1.069 2.931 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.290 1.290 21 C 0.101 3.899 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.057 0.943 33 H -0.002 1.002 34 H 0.015 0.985 35 H 0.066 0.934 36 H 0.269 0.731 37 H 0.083 0.917 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.348 -10.130 -0.084 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.283 3.717 3 O -0.408 6.408 4 N -0.338 5.338 5 C -0.015 4.015 6 C -0.168 4.168 7 C -0.150 4.150 8 C -0.165 4.165 9 C 0.057 3.943 10 H 0.081 0.919 11 N -0.313 5.313 12 C -0.027 4.027 13 C -0.481 4.481 14 H 0.067 0.933 15 C -0.221 4.221 16 N -0.541 5.541 17 Si 0.899 3.101 18 H -0.218 1.218 19 H -0.220 1.220 20 H -0.217 1.217 21 C -0.024 4.024 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.016 0.984 34 H 0.034 0.966 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.633 -8.582 -0.082 14.457 hybrid contribution -1.421 -1.177 -0.081 1.847 sum -13.055 -9.760 -0.163 16.300 Atomic orbital electron populations 1.21951 0.92849 1.04906 1.03450 1.20807 0.90332 0.83767 0.76811 1.90802 1.70527 1.30892 1.48544 1.47860 1.07288 1.05429 1.73209 1.21959 0.95274 0.84912 0.99346 1.21769 1.01217 0.97388 0.96456 1.21003 0.97585 0.99999 0.96402 1.20968 0.94478 0.99419 1.01594 1.20014 0.86934 0.94550 0.92778 0.91932 1.43888 0.98996 1.24984 1.63431 1.21048 0.95398 0.92910 0.93307 1.19853 1.22244 1.04058 1.01966 0.93333 1.25993 1.01169 0.97457 0.97510 1.70699 1.40394 1.39895 1.03096 0.83493 0.76116 0.75918 0.74591 1.21751 1.22027 1.21669 1.22309 0.77438 1.02067 1.00557 0.89772 0.89441 0.89941 0.92262 0.90315 0.91478 0.91109 0.92399 0.92092 0.93058 0.92456 0.98351 0.96637 0.91582 0.92002 0.89909 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 8.65 36.01 0.31 -1.62 16 2 C 0.50 8.61 7.73 -10.99 -0.08 8.53 16 3 O -0.53 -12.43 16.54 5.55 0.09 -12.34 16 4 N -0.60 -9.75 2.24 -172.41 -0.39 -10.14 16 5 C 0.11 1.20 5.95 -2.94 -0.02 1.19 16 6 C -0.13 -1.43 5.70 -27.30 -0.16 -1.58 16 7 C -0.11 -1.52 5.51 -28.01 -0.15 -1.67 16 8 C -0.13 -2.25 4.40 -29.79 -0.13 -2.38 16 9 C 0.17 3.64 2.49 -69.74 -0.17 3.47 16 10 H 0.06 1.57 7.88 -51.93 -0.41 1.16 16 11 N -0.59 -15.33 2.43 -175.58 -0.43 -15.76 16 12 C 0.12 2.86 8.79 59.85 0.53 3.39 16 13 C -0.35 -10.33 9.27 -15.06 -0.14 -10.47 16 14 H 0.05 1.47 7.96 -52.49 -0.42 1.05 16 15 C -0.02 -0.51 4.74 -17.43 -0.08 -0.60 16 16 N -0.90 -28.03 12.35 55.49 0.69 -27.35 16 17 Si 1.07 26.46 29.99 -169.99 -5.10 21.36 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C 0.10 2.03 4.37 -3.99 -0.02 2.01 16 22 H 0.08 0.76 7.41 -51.93 -0.38 0.38 16 23 H 0.09 0.99 8.12 -51.93 -0.42 0.57 16 24 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.68 5.81 -51.92 -0.30 0.38 16 27 H 0.07 0.79 7.32 -51.93 -0.38 0.41 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.88 7.48 -51.93 -0.39 0.49 16 31 H 0.05 0.90 6.78 -51.93 -0.35 0.55 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 34 H 0.02 0.33 6.75 -51.93 -0.35 -0.02 16 35 H 0.07 1.78 5.83 -51.93 -0.30 1.47 16 36 H 0.27 8.48 7.41 -40.82 -0.30 8.18 16 37 H 0.08 2.04 7.31 -51.93 -0.38 1.66 16 38 H 0.06 1.11 7.18 -51.93 -0.37 0.74 16 LS Contribution 294.42 15.07 4.44 4.44 Total: -1.00 -34.43 294.42 -6.91 -41.33 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.09 Total: -1.81 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.12 Total: 0.26 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.13 Total: -53.24 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.10 Total: 21.36 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.43 -6.91 -41.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.773 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds