Wall clock time and date at job start Mon Mar 30 2020 04:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99969 * 2 1 4 4 N 1.34777 * 120.00207 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.62687 * 4.90664 * 4 2 1 6 6 C 1.53197 * 108.77457 * 126.39719 * 5 4 2 7 7 C 1.53039 * 109.31564 * 54.63037 * 6 5 4 8 8 C 1.53040 * 109.53819 * 298.63910 * 7 6 5 9 9 C 1.46926 * 120.63296 * 184.90936 * 4 2 1 10 10 H 1.09000 * 109.70357 * 113.74978 * 9 4 2 11 11 C 1.53003 * 109.58739 * 353.39516 * 9 4 2 12 12 N 1.46499 * 109.47210 * 180.58973 * 11 9 4 13 13 C 1.46496 * 119.99762 * 275.53770 * 12 11 9 14 14 C 1.36936 * 119.99853 * 95.54440 * 12 11 9 15 15 H 1.07999 * 119.99820 * 344.75080 * 14 12 11 16 16 C 1.38808 * 119.99973 * 164.75854 * 14 12 11 17 17 N 1.31618 * 119.99986 * 319.75829 * 16 14 12 18 18 Si 1.86803 * 120.00195 * 139.75987 * 16 14 12 19 19 H 1.48497 * 109.47189 * 179.97438 * 18 16 14 20 20 H 1.48506 * 109.46967 * 300.00113 * 18 16 14 21 21 H 1.48504 * 109.46780 * 59.99629 * 18 16 14 22 22 H 1.08999 * 109.47025 * 264.21367 * 1 2 3 23 23 H 1.09000 * 109.46855 * 24.21520 * 1 2 3 24 24 H 1.08999 * 109.46790 * 144.21556 * 1 2 3 25 25 H 1.08994 * 109.59308 * 6.60643 * 5 4 2 26 26 H 1.09000 * 109.70217 * 246.24860 * 5 4 2 27 27 H 1.09007 * 109.49324 * 294.68206 * 6 5 4 28 28 H 1.08995 * 109.52569 * 174.60230 * 6 5 4 29 29 H 1.08998 * 109.46006 * 178.61649 * 7 6 5 30 30 H 1.09007 * 109.44807 * 58.65188 * 7 6 5 31 31 H 1.08998 * 109.49874 * 301.41116 * 8 7 6 32 32 H 1.09000 * 109.52872 * 181.32926 * 8 7 6 33 33 H 1.09006 * 109.47123 * 60.58884 * 11 9 4 34 34 H 1.09000 * 109.46994 * 300.59309 * 11 9 4 35 35 H 1.09000 * 109.47529 * 271.42548 * 13 12 11 36 36 H 1.09000 * 109.47584 * 31.42954 * 13 12 11 37 37 H 1.08999 * 109.46859 * 151.43067 * 13 12 11 38 38 H 0.96994 * 120.00063 * 1.94855 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4643 -2.4453 -0.1070 6 6 2.0590 -3.2477 -1.2687 7 6 3.5692 -3.3890 -1.0656 8 6 4.2162 -2.0021 -1.0554 9 6 3.6461 -1.1856 0.1087 10 1 3.9391 -1.6429 1.0538 11 6 4.1833 0.2455 0.0431 12 7 5.6451 0.2231 0.1370 13 6 6.2941 0.1773 1.4496 14 6 6.4048 0.2452 -1.0020 15 1 5.9504 0.0323 -1.9584 16 6 7.7589 0.5410 -0.9275 17 7 8.1821 1.4875 -0.1167 18 14 8.9807 -0.4040 -1.9781 19 1 10.3528 0.0995 -1.7156 20 1 8.9100 -1.8486 -1.6410 21 1 8.6503 -0.2139 -3.4134 22 1 -0.3633 -0.1036 1.0224 23 1 -0.3633 0.9373 -0.4215 24 1 -0.3633 -0.8337 -0.6009 25 1 0.4076 -2.2570 -0.2962 26 1 1.5751 -3.0078 0.8200 27 1 1.8651 -2.7276 -2.2069 28 1 1.6020 -4.2368 -1.2999 29 1 3.9911 -3.9805 -1.8781 30 1 3.7627 -3.8869 -0.1154 31 1 4.0021 -1.4938 -1.9955 32 1 5.2947 -2.1040 -0.9344 33 1 3.7748 0.8253 0.8709 34 1 3.8868 0.7019 -0.9013 35 1 6.4460 1.1928 1.8156 36 1 5.6618 -0.3700 2.1487 37 1 7.2575 -0.3249 1.3612 38 1 7.5513 1.9589 0.4495 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260340793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:30 Heat of formation + Delta-G solvation = -1.999736 kcal Electronic energy + Delta-G solvation = -18564.718462 eV Core-core repulsion = 15829.410489 eV Total energy + Delta-G solvation = -2735.307973 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16786 -37.09926 -35.64950 -32.79240 -32.20847 -30.17198 -29.19335 -26.39845 -25.52485 -24.30694 -22.32384 -20.69611 -20.38121 -18.65496 -17.26040 -16.32724 -15.72357 -15.35206 -14.39134 -14.19447 -13.92739 -13.64914 -13.45943 -13.19249 -13.03580 -12.93763 -12.59364 -12.19150 -12.00019 -11.55701 -11.24378 -11.01625 -10.73915 -10.54243 -10.52234 -10.36498 -10.24631 -10.06896 -9.93243 -9.58692 -8.79779 -8.19628 -8.02492 -6.77197 -6.10579 -2.90650 2.90303 3.26441 3.56127 3.59812 3.77932 4.69779 4.74099 4.80248 4.96647 5.08625 5.24063 5.34743 5.38292 5.43016 5.49466 5.53829 5.71521 5.82776 5.87998 5.93326 6.01450 6.13869 6.18875 6.46212 6.48602 6.61209 6.75132 6.88601 7.02613 7.05786 7.18355 7.39240 7.73939 8.13954 8.51669 8.69498 9.26259 10.05018 10.45617 11.27644 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.007933 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.089433 B = 3528.771357 C = 4133.748898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.502 3.498 3 O -0.530 6.530 4 N -0.607 5.607 5 C 0.106 3.894 6 C -0.134 4.134 7 C -0.122 4.122 8 C -0.118 4.118 9 C 0.124 3.876 10 H 0.058 0.942 11 C 0.169 3.831 12 N -0.605 5.605 13 C 0.135 3.865 14 C -0.366 4.366 15 H 0.062 0.938 16 C -0.021 4.021 17 N -0.900 5.900 18 Si 1.050 2.950 19 H -0.288 1.288 20 H -0.296 1.296 21 H -0.294 1.294 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.006 0.994 36 H 0.012 0.988 37 H 0.049 0.951 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.363 -10.521 0.567 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.290 3.710 3 O -0.407 6.407 4 N -0.342 5.342 5 C -0.018 4.018 6 C -0.172 4.172 7 C -0.160 4.160 8 C -0.156 4.156 9 C 0.019 3.981 10 H 0.076 0.924 11 C 0.042 3.958 12 N -0.330 5.330 13 C -0.010 4.010 14 C -0.494 4.494 15 H 0.080 0.920 16 C -0.225 4.225 17 N -0.540 5.540 18 Si 0.881 3.119 19 H -0.214 1.214 20 H -0.223 1.223 21 H -0.221 1.221 22 H 0.106 0.894 23 H 0.107 0.893 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.407 -10.052 0.161 16.758 hybrid contribution -1.703 -0.138 0.351 1.744 sum -15.110 -10.190 0.512 18.232 Atomic orbital electron populations 1.22012 0.93010 1.04472 1.04019 1.20719 0.90100 0.83645 0.76524 1.90834 1.69078 1.31641 1.49099 1.48388 1.07915 1.05412 1.72529 1.21752 0.96280 0.85057 0.98687 1.21916 0.97098 0.99620 0.98583 1.21589 0.94436 0.98494 1.01457 1.21874 1.02038 0.93372 0.98298 1.22345 0.76313 1.01905 0.97513 0.92375 1.21273 0.82841 0.90147 1.01572 1.44271 1.00551 1.85718 1.02442 1.20895 0.96380 0.97524 0.86246 1.19823 0.92655 1.49474 0.87417 0.92007 1.25557 0.96801 0.97148 1.02965 1.70824 1.40036 1.15856 1.27237 0.83695 0.76463 0.76492 0.75282 1.21386 1.22340 1.22142 0.89413 0.89339 0.90268 0.89950 0.91759 0.91693 0.91355 0.92136 0.92349 0.92363 0.88778 0.93024 0.92020 0.97635 0.96890 0.93278 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.55 36.01 0.34 -1.47 16 2 C 0.50 8.04 7.72 -10.99 -0.08 7.96 16 3 O -0.53 -11.11 12.50 5.55 0.07 -11.04 16 4 N -0.61 -9.29 2.97 -165.22 -0.49 -9.79 16 5 C 0.11 1.14 6.31 -3.71 -0.02 1.12 16 6 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 7 C -0.12 -1.65 5.88 -26.69 -0.16 -1.81 16 8 C -0.12 -2.13 4.53 -26.61 -0.12 -2.25 16 9 C 0.12 2.33 3.20 -67.60 -0.22 2.12 16 10 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 11 C 0.17 3.96 3.60 -4.04 -0.01 3.94 16 12 N -0.61 -15.96 2.57 -181.12 -0.46 -16.42 16 13 C 0.14 3.40 9.07 59.84 0.54 3.94 16 14 C -0.37 -10.48 7.92 -15.06 -0.12 -10.60 16 15 H 0.06 1.80 7.88 -52.49 -0.41 1.38 16 16 C -0.02 -0.62 4.33 -17.43 -0.08 -0.70 16 17 N -0.90 -28.00 12.86 55.49 0.71 -27.28 16 18 Si 1.05 25.88 30.05 -169.99 -5.11 20.77 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.08 0.62 6.08 -51.93 -0.32 0.31 16 25 H 0.08 0.66 5.39 -51.93 -0.28 0.38 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.98 6.99 -51.93 -0.36 1.62 16 33 H 0.05 1.28 6.45 -51.93 -0.33 0.94 16 34 H 0.06 1.60 6.87 -51.93 -0.36 1.25 16 35 H 0.01 0.15 7.05 -51.93 -0.37 -0.22 16 36 H 0.01 0.28 8.08 -51.93 -0.42 -0.14 16 37 H 0.05 1.30 7.09 -51.93 -0.37 0.93 16 38 H 0.27 8.55 6.61 -40.82 -0.27 8.28 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -33.32 292.22 -7.05 -40.37 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.09 Total: -1.65 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.09 Total: 0.64 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.24 Total: -53.49 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.11 Total: 20.77 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.32 -7.05 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260340793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.368 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds