Wall clock time and date at job start Mon Mar 30 2020 04:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99969 * 2 1 4 4 N 1.34777 * 120.00207 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.62687 * 4.90664 * 4 2 1 6 6 C 1.53197 * 108.77457 * 126.39719 * 5 4 2 7 7 C 1.53039 * 109.31564 * 54.63037 * 6 5 4 8 8 C 1.53040 * 109.53819 * 298.63910 * 7 6 5 9 9 C 1.46926 * 120.63296 * 184.90936 * 4 2 1 10 10 H 1.09000 * 109.70357 * 113.74978 * 9 4 2 11 11 C 1.53003 * 109.58739 * 353.39516 * 9 4 2 12 12 N 1.46499 * 109.47210 * 180.58973 * 11 9 4 13 13 C 1.46496 * 119.99762 * 275.53770 * 12 11 9 14 14 C 1.36936 * 119.99853 * 95.54440 * 12 11 9 15 15 H 1.07999 * 119.99820 * 344.75080 * 14 12 11 16 16 C 1.38808 * 119.99973 * 164.75854 * 14 12 11 17 17 N 1.31618 * 119.99986 * 319.75829 * 16 14 12 18 18 Si 1.86803 * 120.00195 * 139.75987 * 16 14 12 19 19 H 1.48497 * 109.47189 * 179.97438 * 18 16 14 20 20 H 1.48506 * 109.46967 * 300.00113 * 18 16 14 21 21 H 1.48504 * 109.46780 * 59.99629 * 18 16 14 22 22 H 1.08999 * 109.47025 * 264.21367 * 1 2 3 23 23 H 1.09000 * 109.46855 * 24.21520 * 1 2 3 24 24 H 1.08999 * 109.46790 * 144.21556 * 1 2 3 25 25 H 1.08994 * 109.59308 * 6.60643 * 5 4 2 26 26 H 1.09000 * 109.70217 * 246.24860 * 5 4 2 27 27 H 1.09007 * 109.49324 * 294.68206 * 6 5 4 28 28 H 1.08995 * 109.52569 * 174.60230 * 6 5 4 29 29 H 1.08998 * 109.46006 * 178.61649 * 7 6 5 30 30 H 1.09007 * 109.44807 * 58.65188 * 7 6 5 31 31 H 1.08998 * 109.49874 * 301.41116 * 8 7 6 32 32 H 1.09000 * 109.52872 * 181.32926 * 8 7 6 33 33 H 1.09006 * 109.47123 * 60.58884 * 11 9 4 34 34 H 1.09000 * 109.46994 * 300.59309 * 11 9 4 35 35 H 1.09000 * 109.47529 * 271.42548 * 13 12 11 36 36 H 1.09000 * 109.47584 * 31.42954 * 13 12 11 37 37 H 1.08999 * 109.46859 * 151.43067 * 13 12 11 38 38 H 0.96994 * 120.00063 * 1.94855 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4643 -2.4453 -0.1070 6 6 2.0590 -3.2477 -1.2687 7 6 3.5692 -3.3890 -1.0656 8 6 4.2162 -2.0021 -1.0554 9 6 3.6461 -1.1856 0.1087 10 1 3.9391 -1.6429 1.0538 11 6 4.1833 0.2455 0.0431 12 7 5.6451 0.2231 0.1370 13 6 6.2941 0.1773 1.4496 14 6 6.4048 0.2452 -1.0020 15 1 5.9504 0.0323 -1.9584 16 6 7.7589 0.5410 -0.9275 17 7 8.1821 1.4875 -0.1167 18 14 8.9807 -0.4040 -1.9781 19 1 10.3528 0.0995 -1.7156 20 1 8.9100 -1.8486 -1.6410 21 1 8.6503 -0.2139 -3.4134 22 1 -0.3633 -0.1036 1.0224 23 1 -0.3633 0.9373 -0.4215 24 1 -0.3633 -0.8337 -0.6009 25 1 0.4076 -2.2570 -0.2962 26 1 1.5751 -3.0078 0.8200 27 1 1.8651 -2.7276 -2.2069 28 1 1.6020 -4.2368 -1.2999 29 1 3.9911 -3.9805 -1.8781 30 1 3.7627 -3.8869 -0.1154 31 1 4.0021 -1.4938 -1.9955 32 1 5.2947 -2.1040 -0.9344 33 1 3.7748 0.8253 0.8709 34 1 3.8868 0.7019 -0.9013 35 1 6.4460 1.1928 1.8156 36 1 5.6618 -0.3700 2.1487 37 1 7.2575 -0.3249 1.3612 38 1 7.5513 1.9589 0.4495 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260340793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:30 Heat of formation + Delta-G solvation = -24.316122 kcal Electronic energy + Delta-G solvation = -18565.686173 eV Core-core repulsion = 15829.410489 eV Total energy + Delta-G solvation = -2736.275684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.48473 -38.47932 -37.54606 -34.21729 -33.78224 -31.94028 -30.21198 -28.23869 -27.48824 -25.56130 -23.97127 -22.23228 -21.84409 -19.95482 -19.32983 -17.65362 -17.12816 -16.63285 -16.03356 -15.75976 -15.44476 -15.37559 -14.94209 -14.65149 -14.62979 -14.14631 -14.00348 -13.30746 -13.18235 -13.10912 -12.91266 -12.69853 -12.44618 -12.35777 -12.03894 -11.89582 -11.86952 -11.71343 -11.56195 -11.36875 -10.28007 -10.26882 -9.50678 -8.94432 -8.44154 -5.20707 1.55104 1.62691 1.68576 1.82872 2.07081 2.65810 3.12641 3.60428 3.73199 3.88729 3.93181 4.06068 4.15400 4.32865 4.39458 4.46981 4.54640 4.60615 4.65170 4.70730 4.78602 4.84608 4.99991 5.01978 5.03965 5.07426 5.16513 5.18366 5.33088 5.34865 5.49893 5.71900 5.85079 6.34079 6.55877 7.01247 7.29084 7.84492 8.22984 8.93094 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.007933 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.089433 B = 3528.771357 C = 4133.748898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.488 3.512 3 O -0.595 6.595 4 N -0.608 5.608 5 C 0.099 3.901 6 C -0.129 4.129 7 C -0.117 4.117 8 C -0.110 4.110 9 C 0.136 3.864 10 H 0.060 0.940 11 C 0.181 3.819 12 N -0.621 5.621 13 C 0.148 3.852 14 C -0.363 4.363 15 H 0.050 0.950 16 C -0.075 4.075 17 N -0.928 5.928 18 Si 1.106 2.894 19 H -0.292 1.292 20 H -0.277 1.277 21 H -0.279 1.279 22 H 0.113 0.887 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.026 0.974 35 H -0.014 1.014 36 H 0.045 0.955 37 H 0.032 0.968 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.735 -13.632 0.297 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.279 3.721 3 O -0.476 6.476 4 N -0.341 5.341 5 C -0.022 4.022 6 C -0.167 4.167 7 C -0.154 4.154 8 C -0.149 4.149 9 C 0.030 3.970 10 H 0.078 0.922 11 C 0.056 3.944 12 N -0.347 5.347 13 C 0.002 3.998 14 C -0.491 4.491 15 H 0.068 0.932 16 C -0.272 4.272 17 N -0.570 5.570 18 Si 0.931 3.069 19 H -0.218 1.218 20 H -0.203 1.203 21 H -0.205 1.205 22 H 0.131 0.869 23 H 0.105 0.895 24 H 0.132 0.868 25 H 0.139 0.861 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.004 0.996 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.858 -13.221 -0.111 20.647 hybrid contribution -1.069 0.864 0.445 1.445 sum -16.927 -12.357 0.334 20.960 Atomic orbital electron populations 1.21992 0.87692 1.05973 1.06304 1.21883 0.92619 0.82706 0.74917 1.90811 1.70860 1.33895 1.51997 1.48493 1.06286 1.07520 1.71839 1.22176 0.97705 0.82638 0.99654 1.21924 0.94852 1.01717 0.98188 1.21557 0.96396 0.94990 1.02493 1.21705 1.00321 0.96295 0.96536 1.21759 0.79243 0.98032 0.97960 0.92155 1.21111 0.81301 0.93101 0.98926 1.44533 1.01766 1.86025 1.02348 1.20743 0.96161 0.96566 0.86329 1.19939 0.93156 1.48159 0.87888 0.93196 1.27007 0.98857 0.97138 1.04195 1.70980 1.39344 1.17699 1.28941 0.82965 0.73742 0.75694 0.74480 1.21812 1.20294 1.20478 0.86860 0.89461 0.86781 0.86079 0.89863 0.92460 0.87380 0.91266 0.91252 0.94826 0.92356 0.94718 0.95572 0.99648 0.93692 0.94933 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.55 71.24 0.68 -2.06 16 2 C 0.49 15.14 7.72 87.66 0.68 15.81 16 3 O -0.59 -25.91 12.50 -3.04 -0.04 -25.95 16 4 N -0.61 -17.49 2.97 -795.02 -2.36 -19.85 16 5 C 0.10 1.67 6.31 86.36 0.55 2.21 16 6 C -0.13 -2.23 6.08 30.67 0.19 -2.04 16 7 C -0.12 -2.85 5.88 30.62 0.18 -2.67 16 8 C -0.11 -4.00 4.53 30.67 0.14 -3.86 16 9 C 0.14 5.12 3.20 44.98 0.14 5.26 16 10 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 11 C 0.18 8.93 3.60 86.38 0.31 9.24 16 12 N -0.62 -34.25 2.57 -726.94 -1.87 -36.11 16 13 C 0.15 7.70 9.07 127.77 1.16 8.86 16 14 C -0.36 -21.62 7.92 84.03 0.67 -20.95 16 15 H 0.05 3.04 7.88 -2.91 -0.02 3.02 16 16 C -0.07 -4.48 4.33 84.86 0.37 -4.11 16 17 N -0.93 -59.84 12.86 21.65 0.28 -59.56 16 18 Si 1.11 53.14 30.05 68.60 2.06 55.20 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.11 1.14 6.08 -2.39 -0.01 1.13 16 25 H 0.12 1.15 5.39 -2.39 -0.01 1.14 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 2.51 6.99 -2.39 -0.02 2.50 16 33 H 0.03 1.81 6.45 -2.38 -0.02 1.80 16 34 H 0.03 1.45 6.87 -2.39 -0.02 1.43 16 35 H -0.01 -0.81 7.05 -2.39 -0.02 -0.82 16 36 H 0.04 2.00 8.08 -2.39 -0.02 1.98 16 37 H 0.03 1.77 7.09 -2.39 -0.02 1.75 16 38 H 0.25 16.76 6.61 -92.71 -0.61 16.14 16 Total: -1.00 -78.81 292.22 4.31 -74.50 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.18 Total: 6.07 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.05 Total: 5.71 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -3.95 Total: -115.52 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.04 Total: -25.95 kcal Atomic # 14 Polarization: 53.14 SS G_CDS: 2.06 Total: 55.20 kcal Total: -78.81 4.31 -74.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260340793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.184 kcal (2) G-P(sol) polarization free energy of solvation -78.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds