Wall clock time and date at job start Mon Mar 30 2020 04:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47961 * 110.99712 * 2 1 4 4 C 1.53942 * 86.18089 * 137.58098 * 3 2 1 5 5 C 1.52994 * 113.73004 * 221.92073 * 4 3 2 6 6 N 1.46900 * 109.47176 * 185.94687 * 5 4 3 7 7 C 1.47018 * 110.99748 * 303.13934 * 6 5 4 8 8 C 1.53095 * 109.25704 * 182.39086 * 7 6 5 9 9 O 1.43009 * 109.26027 * 303.14633 * 8 7 6 10 10 C 1.43019 * 113.73949 * 58.67404 * 9 8 7 11 11 H 1.09001 * 109.54500 * 61.27998 * 10 9 8 12 12 C 1.50696 * 109.51167 * 181.39387 * 10 9 8 13 13 H 1.08005 * 119.99957 * 119.77739 * 12 10 9 14 14 C 1.37869 * 120.00045 * 299.78576 * 12 10 9 15 15 N 1.31511 * 120.00070 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99902 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.46977 * 119.99978 * 16 14 12 19 19 H 1.48499 * 109.46972 * 239.99532 * 16 14 12 20 20 C 1.47012 * 111.00026 * 66.76882 * 6 5 4 21 21 C 1.47963 * 110.99636 * 99.35695 * 2 1 3 22 22 H 1.09006 * 109.46646 * 60.00604 * 1 2 3 23 23 H 1.08997 * 109.46809 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47302 * 300.00421 * 1 2 3 25 25 H 1.08994 * 113.76057 * 23.26070 * 3 2 1 26 26 H 1.08999 * 113.85412 * 251.90429 * 3 2 1 27 27 H 1.08989 * 113.73428 * 90.63455 * 4 3 2 28 28 H 1.09001 * 109.47329 * 305.94419 * 5 4 3 29 29 H 1.09004 * 109.47465 * 65.94800 * 5 4 3 30 30 H 1.09002 * 109.50581 * 302.32072 * 7 6 5 31 31 H 1.08999 * 109.51201 * 62.45498 * 7 6 5 32 32 H 1.08998 * 109.50615 * 183.21310 * 8 7 6 33 33 H 1.09002 * 109.50910 * 63.08496 * 8 7 6 34 34 H 0.97003 * 120.00351 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.50672 * 297.54394 * 20 6 5 36 36 H 1.09000 * 109.50826 * 57.63376 * 20 6 5 37 37 H 1.08995 * 113.75682 * 108.10209 * 21 2 1 38 38 H 1.08999 * 113.75859 * 336.73421 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 1.0361 5 6 3.2610 1.8571 2.1881 6 7 4.3476 1.3541 3.0391 7 6 4.0431 0.0060 3.5405 8 6 5.1707 -0.4543 4.4681 9 8 6.4125 -0.4077 3.7603 10 6 6.7408 0.8908 3.2585 11 1 6.8370 1.5893 4.0897 12 6 8.0435 0.8242 2.5038 13 1 8.0761 1.0928 1.4582 14 6 9.1935 0.4201 3.1480 15 7 9.1538 0.0934 4.4213 16 14 10.8081 0.3369 2.2123 17 1 10.5860 0.7519 0.8039 18 1 11.7956 1.2464 2.8471 19 1 11.3262 -1.0545 2.2420 20 6 5.6290 1.3648 2.3186 21 6 1.9992 -0.2246 1.3630 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.3010 2.1197 0.3939 26 1 2.4463 1.6819 -0.9476 27 1 3.9451 0.5052 0.5954 28 1 3.5362 2.8321 1.7859 29 1 2.3504 1.9520 2.7798 30 1 3.1034 0.0266 4.0924 31 1 3.9579 -0.6839 2.7010 32 1 4.9774 -1.4753 4.7970 33 1 5.2208 0.2046 5.3349 34 1 9.9630 -0.1906 4.8746 35 1 5.5692 0.6966 1.4596 36 1 5.8466 2.3771 1.9779 37 1 2.4459 -1.2088 1.5037 38 1 1.3009 0.0442 2.1556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:41 Heat of formation + Delta-G solvation = 0.603020 kcal Electronic energy + Delta-G solvation = -18093.532578 eV Core-core repulsion = 15358.337469 eV Total energy + Delta-G solvation = -2735.195109 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.28651 -38.14859 -34.85823 -32.69044 -30.79483 -30.11165 -27.77896 -26.21185 -25.55210 -24.00461 -22.56570 -21.47535 -19.88974 -18.93059 -16.75776 -16.13772 -15.52416 -15.21164 -15.00771 -14.52915 -14.38681 -14.15133 -13.75920 -13.42293 -13.02257 -12.73795 -12.56044 -12.15313 -11.83319 -11.48740 -11.41967 -11.02775 -10.95051 -10.85243 -10.69018 -10.46381 -10.31340 -9.92429 -9.63089 -9.02294 -8.87463 -8.54141 -8.11716 -7.58906 -6.00793 -4.13705 3.31310 3.39019 3.42720 3.86429 4.30051 4.44105 4.62280 4.69458 4.95677 5.09296 5.17676 5.31924 5.34128 5.44923 5.55267 5.58782 5.62747 5.66990 5.69849 5.83305 5.92267 5.99922 6.03923 6.20329 6.24099 6.34379 6.43977 6.58239 6.69961 6.75556 6.94612 7.38287 7.60189 7.65185 7.91665 8.28143 8.77013 9.11905 9.57110 11.07339 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038087 B = 0.005753 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.976669 B = 4865.783770 C = 5204.262002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.487 5.487 3 C 0.007 3.993 4 C -0.151 4.151 5 C 0.063 3.937 6 N -0.535 5.535 7 C 0.021 3.979 8 C 0.058 3.942 9 O -0.362 6.362 10 C 0.224 3.776 11 H 0.023 0.977 12 C -0.529 4.529 13 H 0.064 0.936 14 C 0.079 3.921 15 N -0.860 5.860 16 Si 0.893 3.107 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.030 3.970 21 C 0.008 3.992 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.260 0.740 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.746 1.763 -4.574 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.209 5.209 3 C -0.122 4.122 4 C -0.172 4.172 5 C -0.066 4.066 6 N -0.258 5.258 7 C -0.107 4.107 8 C -0.021 4.021 9 O -0.280 6.280 10 C 0.168 3.832 11 H 0.040 0.960 12 C -0.567 4.567 13 H 0.082 0.918 14 C -0.127 4.127 15 N -0.496 5.496 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.097 4.097 21 C -0.120 4.120 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.330 1.404 -4.565 15.105 hybrid contribution 0.064 0.069 -0.497 0.506 sum -14.266 1.473 -5.062 15.209 Atomic orbital electron populations 1.22850 0.90140 1.02179 1.00771 1.68494 1.08631 1.18789 1.25004 1.23926 0.96989 0.91171 1.00125 1.23717 0.98757 0.97274 0.97424 1.22257 0.95146 0.97449 0.91716 1.62488 1.02786 1.23459 1.37063 1.22843 0.99260 0.89697 0.98910 1.22354 0.86221 0.99350 0.94166 1.88418 1.34205 1.33634 1.71743 1.19762 0.90123 0.81965 0.91396 0.95973 1.20974 0.91022 1.47701 0.97013 0.91774 1.25044 0.99059 0.93889 0.94727 1.70056 1.28103 1.42129 1.09263 0.86536 0.83446 0.77771 0.80192 1.19599 1.20858 1.20834 1.23007 0.89096 1.00621 0.97016 1.24150 0.96783 1.00596 0.90468 0.91587 0.91356 0.94902 0.91364 0.89541 0.87758 0.90693 0.91448 0.91780 0.94173 0.90994 0.94222 0.92983 0.94882 0.91246 0.89396 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.65 60.07 0.58 0.48 16 2 N -0.49 -6.10 6.56 -246.57 -1.62 -7.71 16 3 C 0.01 0.09 7.55 -2.76 -0.02 0.06 16 4 C -0.15 -2.06 3.00 -89.68 -0.27 -2.32 16 5 C 0.06 0.90 5.31 -3.83 -0.02 0.88 16 6 N -0.53 -9.75 4.94 -234.30 -1.16 -10.90 16 7 C 0.02 0.37 4.66 -3.71 -0.02 0.35 16 8 C 0.06 1.20 7.01 37.21 0.26 1.46 16 9 O -0.36 -9.61 9.87 -35.23 -0.35 -9.96 16 10 C 0.22 5.87 2.66 -27.83 -0.07 5.79 16 11 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 12 C -0.53 -14.96 8.80 -34.45 -0.30 -15.26 16 13 H 0.06 1.75 7.74 -52.48 -0.41 1.35 16 14 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 15 N -0.86 -25.64 12.85 55.43 0.71 -24.93 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.03 0.64 4.62 -3.71 -0.02 0.62 16 21 C 0.01 0.11 5.97 -2.76 -0.02 0.09 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.03 0.30 7.62 -51.93 -0.40 -0.10 16 25 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 1.69 6.33 -51.94 -0.33 1.36 16 28 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 29 H 0.07 0.86 7.82 -51.93 -0.41 0.46 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.71 5.65 -51.93 -0.29 0.42 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.03 0.72 6.41 -51.93 -0.33 0.39 16 36 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 37 H 0.09 1.19 7.31 -51.93 -0.38 0.81 16 38 H 0.07 0.79 7.35 -51.93 -0.38 0.41 16 LS Contribution 295.32 15.07 4.45 4.45 Total: -1.00 -30.68 295.32 -9.24 -39.93 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -6.27 Total: -1.58 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 0.01 Total: -5.68 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -2.06 Total: -43.55 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.35 Total: -9.96 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.68 -9.24 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.529 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds