Wall clock time and date at job start Mon Mar 30 2020 04:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47961 * 110.99712 * 2 1 4 4 C 1.53942 * 86.18089 * 137.58098 * 3 2 1 5 5 C 1.52994 * 113.73004 * 221.92073 * 4 3 2 6 6 N 1.46900 * 109.47176 * 185.94687 * 5 4 3 7 7 C 1.47018 * 110.99748 * 303.13934 * 6 5 4 8 8 C 1.53095 * 109.25704 * 182.39086 * 7 6 5 9 9 O 1.43009 * 109.26027 * 303.14633 * 8 7 6 10 10 C 1.43019 * 113.73949 * 58.67404 * 9 8 7 11 11 H 1.09001 * 109.54500 * 61.27998 * 10 9 8 12 12 C 1.50696 * 109.51167 * 181.39387 * 10 9 8 13 13 H 1.08005 * 119.99957 * 119.77739 * 12 10 9 14 14 C 1.37869 * 120.00045 * 299.78576 * 12 10 9 15 15 N 1.31511 * 120.00070 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99902 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.46977 * 119.99978 * 16 14 12 19 19 H 1.48499 * 109.46972 * 239.99532 * 16 14 12 20 20 C 1.47012 * 111.00026 * 66.76882 * 6 5 4 21 21 C 1.47963 * 110.99636 * 99.35695 * 2 1 3 22 22 H 1.09006 * 109.46646 * 60.00604 * 1 2 3 23 23 H 1.08997 * 109.46809 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47302 * 300.00421 * 1 2 3 25 25 H 1.08994 * 113.76057 * 23.26070 * 3 2 1 26 26 H 1.08999 * 113.85412 * 251.90429 * 3 2 1 27 27 H 1.08989 * 113.73428 * 90.63455 * 4 3 2 28 28 H 1.09001 * 109.47329 * 305.94419 * 5 4 3 29 29 H 1.09004 * 109.47465 * 65.94800 * 5 4 3 30 30 H 1.09002 * 109.50581 * 302.32072 * 7 6 5 31 31 H 1.08999 * 109.51201 * 62.45498 * 7 6 5 32 32 H 1.08998 * 109.50615 * 183.21310 * 8 7 6 33 33 H 1.09002 * 109.50910 * 63.08496 * 8 7 6 34 34 H 0.97003 * 120.00351 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.50672 * 297.54394 * 20 6 5 36 36 H 1.09000 * 109.50826 * 57.63376 * 20 6 5 37 37 H 1.08995 * 113.75682 * 108.10209 * 21 2 1 38 38 H 1.08999 * 113.75859 * 336.73421 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 1.0361 5 6 3.2610 1.8571 2.1881 6 7 4.3476 1.3541 3.0391 7 6 4.0431 0.0060 3.5405 8 6 5.1707 -0.4543 4.4681 9 8 6.4125 -0.4077 3.7603 10 6 6.7408 0.8908 3.2585 11 1 6.8370 1.5893 4.0897 12 6 8.0435 0.8242 2.5038 13 1 8.0761 1.0928 1.4582 14 6 9.1935 0.4201 3.1480 15 7 9.1538 0.0934 4.4213 16 14 10.8081 0.3369 2.2123 17 1 10.5860 0.7519 0.8039 18 1 11.7956 1.2464 2.8471 19 1 11.3262 -1.0545 2.2420 20 6 5.6290 1.3648 2.3186 21 6 1.9992 -0.2246 1.3630 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.3010 2.1197 0.3939 26 1 2.4463 1.6819 -0.9476 27 1 3.9451 0.5052 0.5954 28 1 3.5362 2.8321 1.7859 29 1 2.3504 1.9520 2.7798 30 1 3.1034 0.0266 4.0924 31 1 3.9579 -0.6839 2.7010 32 1 4.9774 -1.4753 4.7970 33 1 5.2208 0.2046 5.3349 34 1 9.9630 -0.1906 4.8746 35 1 5.5692 0.6966 1.4596 36 1 5.8466 2.3771 1.9779 37 1 2.4459 -1.2088 1.5037 38 1 1.3009 0.0442 2.1556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:41 Heat of formation + Delta-G solvation = -24.055417 kcal Electronic energy + Delta-G solvation = -18094.601848 eV Core-core repulsion = 15358.337469 eV Total energy + Delta-G solvation = -2736.264379 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37121 -39.71810 -36.46638 -34.78192 -32.01100 -31.81898 -29.18896 -27.34898 -27.11228 -25.44725 -24.08008 -22.99780 -21.09628 -20.33062 -18.77736 -17.42688 -16.69514 -16.65281 -16.55678 -16.22659 -15.74991 -15.69945 -15.32520 -14.84780 -14.33365 -14.17933 -13.69418 -13.63828 -13.12456 -12.88900 -12.75111 -12.69231 -12.54334 -12.26035 -12.22163 -11.95331 -11.62286 -11.52497 -11.33164 -10.95118 -10.61894 -9.98023 -9.85012 -9.09520 -8.16334 -6.37569 1.41630 1.42992 1.55708 2.40335 2.91381 3.02378 3.09871 3.51767 3.69965 3.74662 4.13619 4.18042 4.25684 4.27340 4.39644 4.44707 4.48685 4.50760 4.55852 4.63913 4.65908 4.75223 4.83080 4.88942 4.92005 4.97110 4.98101 5.08384 5.27636 5.34847 5.41956 5.72017 5.99091 6.08363 6.22706 6.24898 6.64933 7.14022 7.39236 8.92865 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038087 B = 0.005753 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.976669 B = 4865.783770 C = 5204.262002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.510 5.510 3 C 0.018 3.982 4 C -0.153 4.153 5 C 0.068 3.932 6 N -0.545 5.545 7 C 0.032 3.968 8 C 0.048 3.952 9 O -0.398 6.398 10 C 0.223 3.777 11 H -0.017 1.017 12 C -0.554 4.554 13 H 0.066 0.934 14 C 0.024 3.976 15 N -0.899 5.899 16 Si 0.966 3.034 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.280 1.280 20 C 0.049 3.951 21 C 0.013 3.987 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 2.146 -5.510 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.232 5.232 3 C -0.111 4.111 4 C -0.174 4.174 5 C -0.060 4.060 6 N -0.268 5.268 7 C -0.095 4.095 8 C -0.030 4.030 9 O -0.318 6.318 10 C 0.167 3.833 11 H 0.000 1.000 12 C -0.591 4.591 13 H 0.084 0.916 14 C -0.178 4.178 15 N -0.536 5.536 16 Si 0.790 3.210 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.206 1.206 20 C -0.079 4.079 21 C -0.115 4.115 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.025 1.796 -5.511 17.041 hybrid contribution 0.492 -0.063 -0.160 0.521 sum -15.533 1.733 -5.672 16.627 Atomic orbital electron populations 1.22890 0.88465 1.02717 1.01825 1.68461 1.10468 1.19411 1.24894 1.23916 0.96377 0.91343 0.99461 1.23559 0.98135 0.97833 0.97852 1.22341 0.94430 0.97545 0.91727 1.62432 1.02688 1.23925 1.37786 1.22740 0.99052 0.89335 0.98421 1.22637 0.85499 1.00658 0.94222 1.88294 1.37276 1.33502 1.72683 1.19571 0.91652 0.81330 0.90795 0.99964 1.21408 0.92619 1.47752 0.97341 0.91559 1.25958 1.02927 0.93325 0.95595 1.70190 1.29216 1.43254 1.10977 0.85410 0.78642 0.77820 0.79132 1.18534 1.19893 1.20591 1.22585 0.89606 1.00169 0.95548 1.24119 0.96650 0.99422 0.91314 0.90650 0.91166 0.93672 0.89137 0.89599 0.90953 0.90093 0.88864 0.88161 0.94128 0.88940 0.95296 0.92850 0.95613 0.90933 0.90816 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.17 9.65 127.69 1.23 1.06 16 2 N -0.51 -11.52 6.56 -934.01 -6.12 -17.65 16 3 C 0.02 0.37 7.55 86.41 0.65 1.02 16 4 C -0.15 -3.88 3.00 -10.15 -0.03 -3.91 16 5 C 0.07 1.75 5.31 86.30 0.46 2.21 16 6 N -0.54 -19.25 4.94 -895.20 -4.42 -23.67 16 7 C 0.03 1.09 4.66 86.31 0.40 1.49 16 8 C 0.05 1.99 7.01 72.01 0.50 2.49 16 9 O -0.40 -21.82 9.87 -148.98 -1.47 -23.29 16 10 C 0.22 12.10 2.66 29.88 0.08 12.18 16 11 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 12 C -0.55 -32.12 8.80 25.60 0.23 -31.90 16 13 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 14 C 0.02 1.42 5.40 84.65 0.46 1.87 16 15 N -0.90 -55.22 12.85 21.44 0.28 -54.94 16 16 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 17 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 C 0.05 2.12 4.62 86.32 0.40 2.51 16 21 C 0.01 0.31 5.97 86.41 0.52 0.82 16 22 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.04 0.65 7.62 -2.39 -0.02 0.63 16 25 H 0.09 1.46 7.88 -2.39 -0.02 1.44 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 2.33 6.33 -2.39 -0.02 2.31 16 28 H 0.08 2.01 8.09 -2.39 -0.02 1.99 16 29 H 0.09 1.99 7.82 -2.39 -0.02 1.97 16 30 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.04 1.38 5.65 -2.39 -0.01 1.37 16 32 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.03 1.14 6.41 -2.39 -0.02 1.13 16 36 H 0.07 3.02 8.12 -2.39 -0.02 3.00 16 37 H 0.07 1.89 7.31 -2.39 -0.02 1.87 16 38 H 0.09 1.65 7.35 -2.39 -0.02 1.64 16 Total: -1.00 -68.07 295.32 -3.80 -71.87 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.02 Total: 11.24 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 4.90 Total: -10.14 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -10.27 Total: -96.26 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.47 Total: -23.29 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.07 -3.80 -71.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.813 kcal (2) G-P(sol) polarization free energy of solvation -68.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds