Wall clock time and date at job start Mon Mar 30 2020 04:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47963 * 110.99790 * 2 1 4 4 C 1.53938 * 86.17850 * 222.41684 * 3 2 1 5 5 C 1.53006 * 113.72843 * 138.08109 * 4 3 2 6 6 N 1.46902 * 109.46626 * 174.99925 * 5 4 3 7 7 C 1.47007 * 111.00102 * 46.36849 * 6 5 4 8 8 C 1.53101 * 109.25984 * 182.38977 * 7 6 5 9 9 O 1.43020 * 109.25624 * 303.15226 * 8 7 6 10 10 C 1.43011 * 113.74015 * 58.66851 * 9 8 7 11 11 C 1.47013 * 110.99567 * 169.99994 * 6 5 4 12 12 H 1.09002 * 109.51035 * 297.54078 * 11 6 5 13 13 C 1.50708 * 109.50839 * 57.63101 * 11 6 5 14 14 H 1.07999 * 119.99342 * 359.97438 * 13 11 6 15 15 C 1.37870 * 119.99854 * 179.97438 * 13 11 6 16 16 N 1.31512 * 120.00356 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99726 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47341 * 90.00108 * 17 15 13 19 19 H 1.48498 * 109.47332 * 210.00050 * 17 15 13 20 20 H 1.48493 * 109.47093 * 330.00034 * 17 15 13 21 21 C 1.47964 * 110.99973 * 260.64525 * 2 1 3 22 22 H 1.09007 * 109.47323 * 59.99732 * 1 2 3 23 23 H 1.08997 * 109.46931 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47315 * 300.00044 * 1 2 3 25 25 H 1.09005 * 113.75683 * 108.10202 * 3 2 1 26 26 H 1.08998 * 113.76394 * 336.73674 * 3 2 1 27 27 H 1.09002 * 113.73708 * 269.25394 * 4 3 2 28 28 H 1.08993 * 109.46955 * 295.00272 * 5 4 3 29 29 H 1.09000 * 109.47050 * 55.00101 * 5 4 3 30 30 H 1.09001 * 109.50810 * 302.32445 * 7 6 5 31 31 H 1.09003 * 109.51180 * 62.45318 * 7 6 5 32 32 H 1.08998 * 109.50743 * 183.21404 * 8 7 6 33 33 H 1.08997 * 109.50449 * 63.08250 * 8 7 6 34 34 H 1.09000 * 109.50430 * 181.39719 * 10 9 8 35 35 H 1.09000 * 109.50798 * 61.26081 * 10 9 8 36 36 H 0.97008 * 119.99751 * 180.02562 * 16 15 13 37 37 H 1.08995 * 113.75998 * 23.26117 * 21 2 1 38 38 H 1.08998 * 113.75696 * 251.90317 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 -1.0360 5 6 3.2610 1.8571 -2.1881 6 7 4.3323 1.3428 -3.0517 7 6 4.1295 -0.0822 -3.3508 8 6 5.2965 -0.5907 -4.2014 9 8 5.3967 0.2025 -5.3872 10 6 5.5953 1.5957 -5.1329 11 6 4.4312 2.1264 -4.2917 12 1 3.5030 2.0341 -4.8556 13 6 4.6729 3.5750 -3.9537 14 1 4.7454 3.8837 -2.9213 15 6 4.8014 4.5061 -4.9624 16 7 4.7135 4.1300 -6.2195 17 14 5.1002 6.3018 -4.5433 18 1 6.5613 6.5547 -4.4621 19 1 4.5070 7.1618 -5.5986 20 1 4.4700 6.6165 -3.2361 21 6 1.9993 -0.2245 -1.3630 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 2.4460 1.6803 0.9483 26 1 1.3010 2.1198 -0.3940 27 1 3.9459 0.5069 -0.5953 28 1 2.3456 1.9650 -2.7697 29 1 3.5526 2.8275 -1.7863 30 1 4.0847 -0.6468 -2.4195 31 1 3.1964 -0.2098 -3.8997 32 1 5.1221 -1.6317 -4.4734 33 1 6.2227 -0.5129 -3.6321 34 1 5.6369 2.1360 -6.0786 35 1 6.5302 1.7371 -4.5906 36 1 4.8043 4.7852 -6.9292 37 1 1.3010 0.0442 -2.1556 38 1 2.4459 -1.2088 -1.5038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:36 Heat of formation + Delta-G solvation = 0.581354 kcal Electronic energy + Delta-G solvation = -18285.106506 eV Core-core repulsion = 15549.910458 eV Total energy + Delta-G solvation = -2735.196049 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.04700 -38.28136 -34.92551 -33.11906 -30.74651 -29.87865 -27.49229 -26.09200 -25.32286 -24.28732 -22.28788 -21.42330 -19.40784 -19.08253 -16.82515 -15.85614 -15.49437 -15.34976 -14.82075 -14.71662 -14.41288 -13.83988 -13.56907 -13.46474 -13.19085 -12.64848 -12.47431 -12.05542 -11.87793 -11.23542 -11.20687 -11.02588 -10.80519 -10.59084 -10.55920 -10.43758 -10.26354 -10.06711 -9.62565 -9.10908 -8.81804 -8.65922 -8.35655 -7.26651 -6.13889 -4.18210 3.25364 3.32238 3.34811 4.02976 4.31620 4.56547 4.78783 4.91303 5.07892 5.12704 5.20994 5.36207 5.51707 5.54982 5.69264 5.75721 5.77674 5.80025 5.83414 5.90197 5.97884 6.15271 6.28768 6.35549 6.41139 6.54185 6.66722 6.70003 6.91636 7.07302 7.27013 7.50791 7.68095 7.88415 8.15999 8.19836 8.52160 8.88950 9.47464 10.94186 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.007895 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.485927 B = 3545.659425 C = 4543.583691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.488 5.488 3 C 0.005 3.995 4 C -0.112 4.112 5 C 0.079 3.921 6 N -0.531 5.531 7 C 0.016 3.984 8 C 0.066 3.934 9 O -0.405 6.405 10 C 0.069 3.931 11 C 0.188 3.812 12 H 0.007 0.993 13 C -0.508 4.508 14 H 0.066 0.934 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.002 3.998 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.122 0.878 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -6.608 8.313 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.210 5.210 3 C -0.124 4.124 4 C -0.131 4.131 5 C -0.050 4.050 6 N -0.257 5.257 7 C -0.113 4.113 8 C -0.012 4.012 9 O -0.324 6.324 10 C -0.007 4.007 11 C 0.082 3.918 12 H 0.025 0.975 13 C -0.547 4.547 14 H 0.085 0.915 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.126 4.126 22 H 0.052 0.948 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.009 -7.005 8.720 11.882 hybrid contribution -1.069 1.563 -0.662 2.006 sum -5.078 -5.442 8.058 10.970 Atomic orbital electron populations 1.22843 0.90250 1.02002 1.00891 1.68470 1.08590 1.19029 1.24951 1.23963 0.97276 0.91048 1.00136 1.23127 0.97829 0.95868 0.96285 1.21945 0.92912 0.97795 0.92323 1.62378 1.43521 1.00805 1.18971 1.22832 0.97503 0.92107 0.98827 1.22459 0.97039 0.94311 0.87384 1.87905 1.93719 1.21218 1.29575 1.23126 0.97245 0.77444 1.02879 1.19868 0.94657 0.92404 0.84897 0.97534 1.21066 1.49476 0.90740 0.93370 0.91550 1.24991 0.94961 0.99328 0.94934 1.69849 1.50003 1.34507 0.98856 0.86449 0.78505 0.84165 0.78049 1.20484 1.21225 1.19863 1.24250 0.97358 1.00484 0.90520 0.94800 0.91491 0.91632 0.89484 0.91255 0.87839 0.95697 0.89880 0.90848 0.95534 0.90436 0.93555 0.86026 0.94815 0.92579 0.91428 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.65 60.07 0.58 0.46 16 2 N -0.49 -6.50 6.56 -246.60 -1.62 -8.12 16 3 C 0.01 0.07 7.55 -2.76 -0.02 0.05 16 4 C -0.11 -1.68 2.95 -89.69 -0.26 -1.94 16 5 C 0.08 1.48 4.63 -3.82 -0.02 1.46 16 6 N -0.53 -11.24 4.68 -227.72 -1.07 -12.30 16 7 C 0.02 0.29 4.44 -3.71 -0.02 0.28 16 8 C 0.07 1.22 7.01 37.21 0.26 1.48 16 9 O -0.40 -9.32 10.83 -35.23 -0.38 -9.71 16 10 C 0.07 1.73 6.02 37.21 0.22 1.95 16 11 C 0.19 4.74 1.93 -68.75 -0.13 4.61 16 12 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 13 C -0.51 -13.53 8.03 -34.44 -0.28 -13.80 16 14 H 0.07 1.75 6.56 -52.49 -0.34 1.41 16 15 C 0.06 1.60 5.31 -17.82 -0.09 1.51 16 16 N -0.89 -24.96 11.37 55.43 0.63 -24.33 16 17 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.00 0.03 5.91 -2.77 -0.02 0.02 16 22 H 0.03 0.38 7.62 -51.93 -0.40 -0.01 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 27 H 0.10 1.59 7.95 -51.93 -0.41 1.18 16 28 H 0.02 0.50 7.77 -51.93 -0.40 0.09 16 29 H 0.08 1.66 6.72 -51.93 -0.35 1.31 16 30 H 0.07 1.15 5.22 -51.93 -0.27 0.88 16 31 H 0.03 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.12 3.32 6.19 -51.93 -0.32 3.00 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.07 0.97 7.37 -51.93 -0.38 0.58 16 38 H 0.09 1.13 7.25 -51.93 -0.38 0.76 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -28.21 291.62 -9.01 -37.23 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.18 Total: 1.01 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 0.22 Total: -3.93 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -2.05 Total: -44.75 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.38 Total: -9.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.21 -9.01 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.808 kcal (2) G-P(sol) polarization free energy of solvation -28.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds