Wall clock time and date at job start Mon Mar 30 2020 04:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47963 * 110.99790 * 2 1 4 4 C 1.53938 * 86.17850 * 222.41684 * 3 2 1 5 5 C 1.53006 * 113.72843 * 138.08109 * 4 3 2 6 6 N 1.46902 * 109.46626 * 174.99925 * 5 4 3 7 7 C 1.47007 * 111.00102 * 46.36849 * 6 5 4 8 8 C 1.53101 * 109.25984 * 182.38977 * 7 6 5 9 9 O 1.43020 * 109.25624 * 303.15226 * 8 7 6 10 10 C 1.43011 * 113.74015 * 58.66851 * 9 8 7 11 11 C 1.47013 * 110.99567 * 169.99994 * 6 5 4 12 12 H 1.09002 * 109.51035 * 297.54078 * 11 6 5 13 13 C 1.50708 * 109.50839 * 57.63101 * 11 6 5 14 14 H 1.07999 * 119.99342 * 359.97438 * 13 11 6 15 15 C 1.37870 * 119.99854 * 179.97438 * 13 11 6 16 16 N 1.31512 * 120.00356 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99726 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47341 * 90.00108 * 17 15 13 19 19 H 1.48498 * 109.47332 * 210.00050 * 17 15 13 20 20 H 1.48493 * 109.47093 * 330.00034 * 17 15 13 21 21 C 1.47964 * 110.99973 * 260.64525 * 2 1 3 22 22 H 1.09007 * 109.47323 * 59.99732 * 1 2 3 23 23 H 1.08997 * 109.46931 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47315 * 300.00044 * 1 2 3 25 25 H 1.09005 * 113.75683 * 108.10202 * 3 2 1 26 26 H 1.08998 * 113.76394 * 336.73674 * 3 2 1 27 27 H 1.09002 * 113.73708 * 269.25394 * 4 3 2 28 28 H 1.08993 * 109.46955 * 295.00272 * 5 4 3 29 29 H 1.09000 * 109.47050 * 55.00101 * 5 4 3 30 30 H 1.09001 * 109.50810 * 302.32445 * 7 6 5 31 31 H 1.09003 * 109.51180 * 62.45318 * 7 6 5 32 32 H 1.08998 * 109.50743 * 183.21404 * 8 7 6 33 33 H 1.08997 * 109.50449 * 63.08250 * 8 7 6 34 34 H 1.09000 * 109.50430 * 181.39719 * 10 9 8 35 35 H 1.09000 * 109.50798 * 61.26081 * 10 9 8 36 36 H 0.97008 * 119.99751 * 180.02562 * 16 15 13 37 37 H 1.08995 * 113.75998 * 23.26117 * 21 2 1 38 38 H 1.08998 * 113.75696 * 251.90317 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 -1.0360 5 6 3.2610 1.8571 -2.1881 6 7 4.3323 1.3428 -3.0517 7 6 4.1295 -0.0822 -3.3508 8 6 5.2965 -0.5907 -4.2014 9 8 5.3967 0.2025 -5.3872 10 6 5.5953 1.5957 -5.1329 11 6 4.4312 2.1264 -4.2917 12 1 3.5030 2.0341 -4.8556 13 6 4.6729 3.5750 -3.9537 14 1 4.7454 3.8837 -2.9213 15 6 4.8014 4.5061 -4.9624 16 7 4.7135 4.1300 -6.2195 17 14 5.1002 6.3018 -4.5433 18 1 6.5613 6.5547 -4.4621 19 1 4.5070 7.1618 -5.5986 20 1 4.4700 6.6165 -3.2361 21 6 1.9993 -0.2245 -1.3630 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 2.4460 1.6803 0.9483 26 1 1.3010 2.1198 -0.3940 27 1 3.9459 0.5069 -0.5953 28 1 2.3456 1.9650 -2.7697 29 1 3.5526 2.8275 -1.7863 30 1 4.0847 -0.6468 -2.4195 31 1 3.1964 -0.2098 -3.8997 32 1 5.1221 -1.6317 -4.4734 33 1 6.2227 -0.5129 -3.6321 34 1 5.6369 2.1360 -6.0786 35 1 6.5302 1.7371 -4.5906 36 1 4.8043 4.7852 -6.9292 37 1 1.3010 0.0442 -2.1556 38 1 2.4459 -1.2088 -1.5038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:36 Heat of formation + Delta-G solvation = -21.574495 kcal Electronic energy + Delta-G solvation = -18286.067256 eV Core-core repulsion = 15549.910458 eV Total energy + Delta-G solvation = -2736.156798 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28434 -39.91464 -36.61775 -35.06975 -32.06225 -31.61886 -28.98606 -27.40350 -27.03218 -25.76513 -23.99571 -22.80393 -20.93626 -20.49722 -18.71501 -17.46558 -17.06448 -16.71732 -16.40548 -16.11227 -15.94637 -15.37128 -15.30503 -14.99832 -14.67435 -14.03949 -13.84957 -13.54732 -13.30030 -12.89008 -12.77881 -12.58664 -12.45473 -12.19153 -12.09301 -11.98723 -11.73763 -11.47987 -11.26207 -11.01069 -10.70387 -10.23579 -9.83320 -9.02893 -8.19658 -6.31824 1.42028 1.43013 1.53258 2.38517 2.96830 3.05499 3.08138 3.32776 3.55587 3.83678 4.13886 4.20848 4.30757 4.35476 4.41707 4.45740 4.48826 4.54293 4.58468 4.70612 4.73308 4.79544 4.84647 4.91456 4.95136 4.96379 5.12573 5.26688 5.31430 5.35979 5.51823 5.64592 5.98207 6.04278 6.25305 6.46298 6.64704 6.82895 7.38197 8.88025 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.007895 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.485927 B = 3545.659425 C = 4543.583691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.492 5.492 3 C 0.010 3.990 4 C -0.108 4.108 5 C 0.085 3.915 6 N -0.537 5.537 7 C 0.019 3.981 8 C 0.057 3.943 9 O -0.421 6.421 10 C 0.083 3.917 11 C 0.196 3.804 12 H -0.037 1.037 13 C -0.522 4.522 14 H 0.065 0.935 15 C 0.013 3.987 16 N -0.922 5.922 17 Si 0.965 3.035 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.007 3.993 22 H 0.030 0.970 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.006 0.994 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.018 0.982 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.060 0.940 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 -7.311 10.128 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.214 5.214 3 C -0.119 4.119 4 C -0.127 4.127 5 C -0.043 4.043 6 N -0.262 5.262 7 C -0.109 4.109 8 C -0.020 4.020 9 O -0.340 6.340 10 C 0.006 3.994 11 C 0.088 3.912 12 H -0.020 1.020 13 C -0.560 4.560 14 H 0.083 0.917 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.790 3.210 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.122 4.122 22 H 0.049 0.951 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.119 0.881 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.024 0.976 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.036 0.964 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.186 -7.729 10.556 13.736 hybrid contribution -1.050 1.698 -1.210 2.334 sum -5.236 -6.031 9.346 12.294 Atomic orbital electron populations 1.22899 0.88886 1.02928 1.01369 1.68473 1.10001 1.18710 1.24198 1.23966 0.96567 0.91284 1.00063 1.23037 0.98714 0.95677 0.95257 1.21885 0.91198 0.98361 0.92903 1.62337 1.44715 1.02042 1.17089 1.22920 0.97032 0.90592 1.00354 1.22846 0.97527 0.95446 0.86192 1.87859 1.93803 1.20257 1.32131 1.22724 0.96833 0.78688 1.01183 1.19606 0.92569 0.92829 0.86179 1.01967 1.21314 1.49528 0.91830 0.93370 0.91665 1.25803 0.94590 1.03530 0.94734 1.69989 1.50627 1.35815 0.99753 0.85436 0.78531 0.78994 0.77997 1.19858 1.20980 1.19045 1.24201 0.96763 1.00403 0.90814 0.95126 0.90387 0.90374 0.88128 0.91302 0.87498 0.97561 0.91560 0.87431 0.96362 0.86537 0.92698 0.88930 0.95281 0.92532 0.92225 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.24 9.65 127.69 1.23 0.99 16 2 N -0.49 -11.82 6.56 -934.09 -6.12 -17.94 16 3 C 0.01 0.25 7.55 86.41 0.65 0.91 16 4 C -0.11 -3.05 2.95 -10.15 -0.03 -3.08 16 5 C 0.08 3.19 4.63 86.31 0.40 3.59 16 6 N -0.54 -22.70 4.68 -874.36 -4.09 -26.79 16 7 C 0.02 0.67 4.44 86.32 0.38 1.06 16 8 C 0.06 2.00 7.01 72.02 0.50 2.50 16 9 O -0.42 -19.41 10.83 -148.98 -1.61 -21.02 16 10 C 0.08 4.24 6.02 72.02 0.43 4.67 16 11 C 0.20 10.16 1.93 44.18 0.09 10.25 16 12 H -0.04 -2.21 8.14 -2.39 -0.02 -2.23 16 13 C -0.52 -28.43 8.03 25.60 0.21 -28.23 16 14 H 0.07 3.49 6.56 -2.91 -0.02 3.47 16 15 C 0.01 0.69 5.31 84.65 0.45 1.13 16 16 N -0.92 -53.00 11.37 21.44 0.24 -52.76 16 17 Si 0.97 42.91 29.54 68.60 2.03 44.93 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 C 0.01 0.17 5.91 86.40 0.51 0.68 16 22 H 0.03 0.63 7.62 -2.38 -0.02 0.62 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.07 1.70 7.88 -2.39 -0.02 1.68 16 27 H 0.11 3.01 7.95 -2.39 -0.02 2.99 16 28 H 0.01 0.25 7.77 -2.39 -0.02 0.23 16 29 H 0.07 2.68 6.72 -2.39 -0.02 2.66 16 30 H 0.11 3.06 5.22 -2.39 -0.01 3.05 16 31 H 0.02 0.68 8.09 -2.39 -0.02 0.66 16 32 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 5.28 6.19 -2.39 -0.01 5.26 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 37 H 0.06 1.63 7.37 -2.39 -0.02 1.61 16 38 H 0.10 2.27 7.25 -2.39 -0.02 2.25 16 Total: -1.00 -61.58 291.62 -3.71 -65.29 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 1.02 Total: 13.81 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.83 Total: -5.52 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -9.97 Total: -97.49 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.61 Total: -21.02 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -61.58 -3.71 -65.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.712 kcal (2) G-P(sol) polarization free energy of solvation -61.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds