Wall clock time and date at job start Mon Mar 30 2020 04:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21281 * 119.99993 * 2 1 4 4 N 1.34778 * 120.00069 * 179.97438 * 2 1 3 5 5 C 1.46933 * 120.62693 * 354.40256 * 4 2 1 6 6 C 1.53195 * 108.77180 * 233.58557 * 5 4 2 7 7 C 1.53041 * 109.31216 * 305.36220 * 6 5 4 8 8 C 1.52998 * 109.45803 * 181.38677 * 7 6 5 9 9 H 1.08994 * 109.47397 * 59.97926 * 8 7 6 10 10 N 1.46904 * 109.47224 * 299.97541 * 8 7 6 11 11 C 1.52997 * 109.47279 * 179.97438 * 8 7 6 12 12 C 1.50705 * 109.47401 * 185.00000 * 11 8 7 13 13 H 1.07997 * 119.99936 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99812 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99408 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00305 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47207 * 89.99648 * 16 14 12 18 18 H 1.48493 * 109.46752 * 210.00144 * 16 14 12 19 19 H 1.48499 * 109.46658 * 329.99917 * 16 14 12 20 20 C 1.53047 * 109.52396 * 61.37877 * 7 6 5 21 21 C 1.46923 * 120.63383 * 174.37891 * 4 2 1 22 22 H 1.09001 * 109.47018 * 184.87951 * 1 2 3 23 23 H 1.08996 * 109.46904 * 304.88095 * 1 2 3 24 24 H 1.08997 * 109.46475 * 64.88190 * 1 2 3 25 25 H 1.08998 * 109.58362 * 113.80380 * 5 4 2 26 26 H 1.09000 * 109.70588 * 353.44407 * 5 4 2 27 27 H 1.09001 * 109.49178 * 185.41834 * 6 5 4 28 28 H 1.08991 * 109.52314 * 65.33803 * 6 5 4 29 29 H 1.08994 * 109.46716 * 301.36065 * 7 6 5 30 30 H 1.00907 * 110.99655 * 176.04335 * 10 8 7 31 31 H 1.00893 * 111.00420 * 299.99967 * 10 8 7 32 32 H 1.09001 * 109.47109 * 65.00061 * 11 8 7 33 33 H 1.08998 * 109.47471 * 305.00290 * 11 8 7 34 34 H 0.97003 * 119.99354 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.49666 * 58.57742 * 20 7 6 36 36 H 1.08994 * 109.49358 * 178.67130 * 20 7 6 37 37 H 1.08999 * 109.58560 * 246.20408 * 21 4 2 38 38 H 1.09000 * 109.58207 * 6.48403 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4655 -2.4446 0.1244 6 6 2.0726 -3.2391 1.2850 7 6 3.5806 -3.3819 1.0666 8 6 4.1850 -4.2046 2.2062 9 1 3.7250 -5.1925 2.2248 10 7 3.9380 -3.5252 3.4851 11 6 5.6925 -4.3481 1.9878 12 6 6.2683 -5.2593 3.0410 13 1 5.6234 -5.6931 3.7909 14 6 7.6182 -5.5401 3.0466 15 7 8.1204 -6.3357 3.9654 16 14 8.7335 -4.7905 1.7490 17 1 9.2550 -3.4885 2.2369 18 1 9.8687 -5.7096 1.4813 19 1 7.9632 -4.5775 0.4975 20 6 4.2272 -1.9950 1.0403 21 6 3.6448 -1.1865 -0.1233 22 1 -0.3633 -1.0240 0.0874 23 1 -0.3633 0.5877 0.8430 24 1 -0.3632 0.4362 -0.9305 25 1 1.5686 -3.0122 -0.8004 26 1 0.4102 -2.2571 0.3224 27 1 1.6159 -4.2279 1.3271 28 1 1.8888 -2.7133 2.2219 29 1 3.7640 -3.8861 0.1178 30 1 4.2709 -4.0800 4.2594 31 1 4.3549 -2.6065 3.4929 32 1 6.1647 -3.3682 2.0576 33 1 5.8780 -4.7712 1.0005 34 1 9.0702 -6.5329 3.9696 35 1 4.0230 -1.4806 1.9793 36 1 5.3042 -2.0983 0.9083 37 1 3.9255 -1.6516 -1.0683 38 1 4.0278 -0.1666 -0.0901 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261018498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:17 Heat of formation + Delta-G solvation = -49.432404 kcal Electronic energy + Delta-G solvation = -17890.793859 eV Core-core repulsion = 15153.429051 eV Total energy + Delta-G solvation = -2737.364808 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17563 -38.00179 -35.49926 -32.74572 -31.79799 -31.14339 -29.28947 -28.56878 -25.86992 -23.39352 -22.92321 -20.98663 -19.38971 -18.57784 -17.26182 -16.83763 -15.87444 -15.54600 -15.19947 -14.45971 -14.11150 -13.83325 -13.61715 -13.38557 -13.26188 -12.82406 -12.67866 -12.47685 -12.17482 -12.04184 -11.80503 -11.23759 -11.11072 -10.87900 -10.59317 -10.39011 -10.21873 -9.96086 -9.75633 -9.62029 -9.19672 -8.63626 -8.58760 -7.79010 -6.13005 -4.11862 2.59794 3.02067 3.23858 3.32462 3.34759 4.37341 4.52314 4.69608 4.97726 5.07763 5.13248 5.19088 5.25435 5.26996 5.36773 5.39179 5.48220 5.71199 5.76698 5.83765 5.96796 6.01354 6.12334 6.26151 6.38073 6.50098 6.55836 6.68664 6.76155 7.05715 7.24584 7.41617 7.69595 8.00075 8.14907 8.23937 8.43485 8.90683 9.49838 10.99982 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040738 B = 0.005614 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.150695 B = 4986.404089 C = 5349.119354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.511 3.489 3 O -0.556 6.556 4 N -0.607 5.607 5 C 0.099 3.901 6 C -0.120 4.120 7 C -0.080 4.080 8 C 0.107 3.893 9 H 0.071 0.929 10 N -0.841 5.841 11 C -0.045 4.045 12 C -0.523 4.523 13 H 0.072 0.928 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.879 3.121 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.131 4.131 21 C 0.110 3.890 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.347 0.653 31 H 0.327 0.673 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.263 0.737 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.201 7.998 -8.595 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.300 3.700 3 O -0.435 6.435 4 N -0.341 5.341 5 C -0.023 4.023 6 C -0.159 4.159 7 C -0.099 4.099 8 C -0.005 4.005 9 H 0.089 0.911 10 N -0.370 5.370 11 C -0.084 4.084 12 C -0.561 4.561 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.707 3.293 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.170 4.170 21 C -0.012 4.012 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.498 8.398 -8.727 18.891 hybrid contribution 1.919 0.093 -0.527 1.992 sum -12.580 8.491 -9.254 17.775 Atomic orbital electron populations 1.22029 0.92251 1.04609 1.04985 1.20768 0.90552 0.83184 0.75539 1.90693 1.70714 1.31229 1.50864 1.48201 1.07676 1.06217 1.72005 1.22010 0.96506 0.84195 0.99630 1.21867 0.95864 1.00001 0.98126 1.21220 0.94211 0.95386 0.99067 1.21281 0.95259 0.95774 0.88183 0.91091 1.59241 1.65732 1.06932 1.05070 1.20364 0.93514 0.96742 0.97745 1.21088 0.93657 1.28243 1.13130 0.90971 1.25029 0.98219 0.94645 0.95421 1.69916 1.13306 1.36441 1.34258 0.86791 0.80452 0.79206 0.82886 1.20384 1.21406 1.19085 1.22017 1.00635 0.95931 0.98369 1.21652 0.79037 1.01958 0.98556 0.89795 0.88956 0.88991 0.91631 0.89503 0.91052 0.90150 0.91589 0.83990 0.86197 0.96942 0.96563 0.92703 0.91120 0.90399 0.91812 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 10.11 36.01 0.36 -1.13 16 2 C 0.51 6.67 7.80 -10.98 -0.09 6.58 16 3 O -0.56 -9.60 16.52 5.56 0.09 -9.51 16 4 N -0.61 -7.48 2.97 -172.76 -0.51 -7.99 16 5 C 0.10 0.98 6.30 -3.71 -0.02 0.96 16 6 C -0.12 -1.46 5.18 -26.61 -0.14 -1.60 16 7 C -0.08 -1.17 2.03 -90.58 -0.18 -1.35 16 8 C 0.11 1.94 2.57 -67.71 -0.17 1.76 16 9 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 10 N -0.84 -14.64 8.40 -4.67 -0.04 -14.68 16 11 C -0.04 -1.00 3.19 -27.88 -0.09 -1.09 16 12 C -0.52 -14.09 9.10 -34.44 -0.31 -14.41 16 13 H 0.07 2.09 7.39 -52.49 -0.39 1.70 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 16 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 20 C -0.13 -1.91 4.67 -26.61 -0.12 -2.04 16 21 C 0.11 1.48 6.44 -3.71 -0.02 1.45 16 22 H 0.08 0.52 5.14 -51.93 -0.27 0.25 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.65 5.15 -51.93 -0.27 0.38 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.08 7.65 -51.93 -0.40 0.69 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.35 6.62 7.90 -39.29 -0.31 6.31 16 31 H 0.33 5.56 7.20 -39.30 -0.28 5.28 16 32 H 0.01 0.28 6.10 -51.93 -0.32 -0.04 16 33 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 1.08 6.74 -51.93 -0.35 0.73 16 36 H 0.08 1.22 6.47 -51.93 -0.34 0.89 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 LS Contribution 292.17 15.07 4.40 4.40 Total: -1.00 -31.40 292.17 -6.62 -38.02 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.78 Total: 8.45 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.89 Total: -9.01 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.22 Total: -49.04 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.40 -6.62 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.409 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds