Wall clock time and date at job start Mon Mar 30 2020 04:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21281 * 119.99993 * 2 1 4 4 N 1.34778 * 120.00069 * 179.97438 * 2 1 3 5 5 C 1.46933 * 120.62693 * 354.40256 * 4 2 1 6 6 C 1.53195 * 108.77180 * 233.58557 * 5 4 2 7 7 C 1.53041 * 109.31216 * 305.36220 * 6 5 4 8 8 C 1.52998 * 109.45803 * 181.38677 * 7 6 5 9 9 H 1.08994 * 109.47397 * 59.97926 * 8 7 6 10 10 N 1.46904 * 109.47224 * 299.97541 * 8 7 6 11 11 C 1.52997 * 109.47279 * 179.97438 * 8 7 6 12 12 C 1.50705 * 109.47401 * 185.00000 * 11 8 7 13 13 H 1.07997 * 119.99936 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99812 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99408 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00305 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47207 * 89.99648 * 16 14 12 18 18 H 1.48493 * 109.46752 * 210.00144 * 16 14 12 19 19 H 1.48499 * 109.46658 * 329.99917 * 16 14 12 20 20 C 1.53047 * 109.52396 * 61.37877 * 7 6 5 21 21 C 1.46923 * 120.63383 * 174.37891 * 4 2 1 22 22 H 1.09001 * 109.47018 * 184.87951 * 1 2 3 23 23 H 1.08996 * 109.46904 * 304.88095 * 1 2 3 24 24 H 1.08997 * 109.46475 * 64.88190 * 1 2 3 25 25 H 1.08998 * 109.58362 * 113.80380 * 5 4 2 26 26 H 1.09000 * 109.70588 * 353.44407 * 5 4 2 27 27 H 1.09001 * 109.49178 * 185.41834 * 6 5 4 28 28 H 1.08991 * 109.52314 * 65.33803 * 6 5 4 29 29 H 1.08994 * 109.46716 * 301.36065 * 7 6 5 30 30 H 1.00907 * 110.99655 * 176.04335 * 10 8 7 31 31 H 1.00893 * 111.00420 * 299.99967 * 10 8 7 32 32 H 1.09001 * 109.47109 * 65.00061 * 11 8 7 33 33 H 1.08998 * 109.47471 * 305.00290 * 11 8 7 34 34 H 0.97003 * 119.99354 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.49666 * 58.57742 * 20 7 6 36 36 H 1.08994 * 109.49358 * 178.67130 * 20 7 6 37 37 H 1.08999 * 109.58560 * 246.20408 * 21 4 2 38 38 H 1.09000 * 109.58207 * 6.48403 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4655 -2.4446 0.1244 6 6 2.0726 -3.2391 1.2850 7 6 3.5806 -3.3819 1.0666 8 6 4.1850 -4.2046 2.2062 9 1 3.7250 -5.1925 2.2248 10 7 3.9380 -3.5252 3.4851 11 6 5.6925 -4.3481 1.9878 12 6 6.2683 -5.2593 3.0410 13 1 5.6234 -5.6931 3.7909 14 6 7.6182 -5.5401 3.0466 15 7 8.1204 -6.3357 3.9654 16 14 8.7335 -4.7905 1.7490 17 1 9.2550 -3.4885 2.2369 18 1 9.8687 -5.7096 1.4813 19 1 7.9632 -4.5775 0.4975 20 6 4.2272 -1.9950 1.0403 21 6 3.6448 -1.1865 -0.1233 22 1 -0.3633 -1.0240 0.0874 23 1 -0.3633 0.5877 0.8430 24 1 -0.3632 0.4362 -0.9305 25 1 1.5686 -3.0122 -0.8004 26 1 0.4102 -2.2571 0.3224 27 1 1.6159 -4.2279 1.3271 28 1 1.8888 -2.7133 2.2219 29 1 3.7640 -3.8861 0.1178 30 1 4.2709 -4.0800 4.2594 31 1 4.3549 -2.6065 3.4929 32 1 6.1647 -3.3682 2.0576 33 1 5.8780 -4.7712 1.0005 34 1 9.0702 -6.5329 3.9696 35 1 4.0230 -1.4806 1.9793 36 1 5.3042 -2.0983 0.9083 37 1 3.9255 -1.6516 -1.0683 38 1 4.0278 -0.1666 -0.0901 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261018498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:17 Heat of formation + Delta-G solvation = -72.038749 kcal Electronic energy + Delta-G solvation = -17891.774144 eV Core-core repulsion = 15153.429051 eV Total energy + Delta-G solvation = -2738.345093 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.19651 -39.23302 -36.81765 -34.67644 -32.99525 -32.25415 -30.43860 -30.07845 -27.18292 -24.80456 -24.11535 -22.34561 -20.65226 -19.68106 -19.06625 -18.03475 -16.99117 -16.68127 -16.41532 -16.30458 -15.33582 -15.05691 -14.93610 -14.76909 -14.30705 -14.24382 -13.95143 -13.80092 -13.58692 -12.97304 -12.95001 -12.71439 -12.49031 -12.18511 -12.10689 -11.95387 -11.70269 -11.42345 -11.27440 -10.97161 -10.80181 -10.68281 -9.61765 -9.31523 -8.31138 -6.33787 1.31305 1.33592 1.43955 1.64012 2.11551 2.32399 3.04651 3.66774 3.83745 3.93851 3.95320 4.03669 4.22212 4.29947 4.47882 4.51865 4.65210 4.68306 4.73456 4.83049 4.86730 4.91337 4.95211 5.11407 5.13084 5.20234 5.27328 5.29432 5.50397 5.60456 5.67166 5.68251 6.23609 6.46526 6.50070 6.72600 6.74976 7.19267 7.31226 8.84976 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040738 B = 0.005614 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.150695 B = 4986.404089 C = 5349.119354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.501 3.499 3 O -0.608 6.608 4 N -0.608 5.608 5 C 0.101 3.899 6 C -0.115 4.115 7 C -0.074 4.074 8 C 0.112 3.888 9 H 0.059 0.941 10 N -0.829 5.829 11 C -0.040 4.040 12 C -0.522 4.522 13 H 0.039 0.961 14 C 0.007 3.993 15 N -0.949 5.949 16 Si 0.943 3.057 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.248 1.248 20 C -0.125 4.125 21 C 0.113 3.887 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.335 0.665 31 H 0.330 0.670 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.968 8.633 -10.569 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.292 3.708 3 O -0.491 6.491 4 N -0.340 5.340 5 C -0.020 4.020 6 C -0.153 4.153 7 C -0.093 4.093 8 C 0.000 4.000 9 H 0.078 0.922 10 N -0.357 5.357 11 C -0.079 4.079 12 C -0.560 4.560 13 H 0.057 0.943 14 C -0.190 4.190 15 N -0.590 5.590 16 Si 0.768 3.232 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.171 1.171 20 C -0.163 4.163 21 C -0.010 4.010 22 H 0.129 0.871 23 H 0.116 0.884 24 H 0.125 0.875 25 H 0.102 0.898 26 H 0.138 0.862 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.304 9.021 -10.713 21.493 hybrid contribution 2.435 -0.156 0.169 2.446 sum -13.869 8.865 -10.544 19.547 Atomic orbital electron populations 1.22059 0.88271 1.06607 1.06013 1.21670 0.92469 0.82417 0.74241 1.90670 1.72112 1.33040 1.53241 1.48341 1.07208 1.07183 1.71303 1.22191 0.97714 0.82737 0.99367 1.21796 0.93857 1.00992 0.98631 1.21155 0.96001 0.94532 0.97577 1.21216 0.92686 0.96290 0.89777 0.92229 1.59247 1.65248 1.06750 1.04439 1.20342 0.96274 0.95439 0.95852 1.21435 0.93344 1.28055 1.13213 0.94274 1.25928 1.00100 0.95298 0.97661 1.70065 1.13734 1.38607 1.36609 0.85761 0.78414 0.78297 0.80755 1.19783 1.21373 1.17118 1.21917 0.99929 0.96034 0.98466 1.21516 0.80198 1.00767 0.98509 0.87141 0.88377 0.87526 0.89753 0.86234 0.89877 0.91506 0.90773 0.85271 0.85804 0.96610 0.96584 0.92713 0.92248 0.91735 0.90391 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.11 71.24 0.72 -1.50 16 2 C 0.50 12.00 7.80 87.66 0.68 12.68 16 3 O -0.61 -20.65 16.52 -3.03 -0.05 -20.70 16 4 N -0.61 -13.34 2.97 -818.88 -2.43 -15.77 16 5 C 0.10 1.57 6.30 86.36 0.54 2.12 16 6 C -0.11 -2.43 5.18 30.67 0.16 -2.27 16 7 C -0.07 -2.00 2.03 -10.76 -0.02 -2.02 16 8 C 0.11 3.98 2.57 44.91 0.12 4.09 16 9 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 10 N -0.83 -28.65 8.40 -168.68 -1.42 -30.07 16 11 C -0.04 -1.75 3.19 29.85 0.10 -1.66 16 12 C -0.52 -28.55 9.10 25.60 0.23 -28.32 16 13 H 0.04 2.34 7.39 -2.91 -0.02 2.32 16 14 C 0.01 0.40 5.47 84.66 0.46 0.87 16 15 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 16 Si 0.94 43.87 27.47 68.60 1.88 45.76 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 20 C -0.13 -3.48 4.67 30.67 0.14 -3.33 16 21 C 0.11 2.85 6.44 86.36 0.56 3.40 16 22 H 0.11 0.80 5.14 -2.39 -0.01 0.78 16 23 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.12 1.12 5.15 -2.39 -0.01 1.11 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.63 7.65 -2.39 -0.02 1.61 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.34 13.03 7.90 -89.69 -0.71 12.32 16 31 H 0.33 11.13 7.20 -89.70 -0.65 10.48 16 32 H 0.02 0.68 6.10 -2.39 -0.01 0.67 16 33 H 0.02 0.70 7.20 -2.39 -0.02 0.68 16 34 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.06 1.77 6.74 -2.39 -0.02 1.75 16 36 H 0.06 1.95 6.47 -2.39 -0.02 1.94 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 2.04 7.00 -2.39 -0.02 2.03 16 Total: -1.00 -69.80 292.17 1.63 -68.17 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.34 Total: 26.85 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 3.69 Total: -15.94 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -3.55 Total: -104.14 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.70 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Total: -69.80 1.63 -68.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.870 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds