Wall clock time and date at job start Mon Mar 30 2020 03:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47109 * 2 1 4 4 C 1.33716 * 118.53639 * 270.02139 * 3 2 1 5 5 O 1.21278 * 118.62395 * 358.28569 * 4 3 2 6 6 C 1.50249 * 122.75312 * 178.29407 * 4 3 2 7 7 N 1.46906 * 109.97974 * 17.19846 * 6 4 3 8 8 C 1.46896 * 111.00071 * 73.06789 * 7 6 4 9 9 H 1.09002 * 109.47220 * 292.11172 * 8 7 6 10 10 C 1.53000 * 109.47053 * 172.10816 * 8 7 6 11 11 C 1.50703 * 109.46997 * 52.11192 * 8 7 6 12 12 H 1.08003 * 119.99742 * 359.97438 * 11 8 7 13 13 C 1.37873 * 119.99873 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99975 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47061 * 59.99778 * 15 13 11 17 17 H 1.48494 * 109.47452 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46988 * 300.00348 * 15 13 11 19 19 C 1.47192 * 110.17263 * 309.70361 * 7 6 4 20 20 C 1.46011 * 118.53625 * 90.00073 * 3 2 1 21 21 H 1.09001 * 109.37356 * 78.00566 * 20 3 2 22 22 C 1.52999 * 109.37207 * 318.35621 * 20 3 2 23 23 H 1.09002 * 109.46781 * 59.99938 * 1 2 3 24 24 H 1.08997 * 109.47404 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47287 * 299.99957 * 1 2 3 26 26 H 1.09001 * 109.47287 * 240.00043 * 2 1 3 27 27 H 1.09001 * 109.47402 * 119.99629 * 2 1 3 28 28 H 1.08998 * 109.38617 * 257.04701 * 6 4 3 29 29 H 1.08998 * 109.39072 * 137.35231 * 6 4 3 30 30 H 1.08992 * 109.47399 * 300.00238 * 10 8 7 31 31 H 1.09004 * 109.46724 * 60.00724 * 10 8 7 32 32 H 1.09001 * 109.47194 * 180.02562 * 10 8 7 33 33 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.59701 * 188.77325 * 19 7 6 35 35 H 1.09005 * 109.59343 * 309.22759 * 19 7 6 36 36 H 1.08993 * 109.47536 * 299.41606 * 22 20 3 37 37 H 1.08999 * 109.46944 * 59.42187 * 22 20 3 38 38 H 1.09001 * 109.46839 * 179.41875 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2308 1.9837 -1.1747 5 8 2.0414 1.3535 -2.1935 6 6 2.6946 3.4085 -1.2854 7 7 3.2505 3.8566 -0.0016 8 6 4.5618 3.2430 0.2472 9 1 4.4369 2.1726 0.4107 10 6 5.1949 3.8779 1.4870 11 6 5.4560 3.4681 -0.9447 12 1 5.0870 4.0123 -1.8015 13 6 6.7453 2.9795 -0.9413 14 7 7.1948 2.3173 0.1022 15 14 7.8535 3.2579 -2.4190 16 1 8.0231 4.7162 -2.6428 17 1 9.1791 2.6377 -2.1675 18 1 7.2390 2.6408 -3.6219 19 6 2.3113 3.5555 1.0910 20 6 2.2508 2.0389 1.2827 21 1 3.1941 1.6895 1.7025 22 6 1.1115 1.6938 2.2439 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8510 4.0436 -1.5558 29 1 3.4616 3.4805 -2.0566 30 1 5.3198 4.9482 1.3235 31 1 4.5481 3.7150 2.3491 32 1 6.1681 3.4229 1.6714 33 1 8.1017 1.9732 0.1044 34 1 2.6574 4.0267 2.0109 35 1 1.3206 3.9314 0.8355 36 1 0.1671 2.0464 1.8295 37 1 1.0671 0.6134 2.3816 38 1 1.2888 2.1756 3.2054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261028425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:20 Heat of formation + Delta-G solvation = -19.883943 kcal Electronic energy + Delta-G solvation = -18887.932044 eV Core-core repulsion = 16151.848553 eV Total energy + Delta-G solvation = -2736.083491 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40405 -37.03477 -35.71300 -33.02217 -31.37497 -30.29970 -29.18235 -27.17006 -24.96813 -24.11404 -22.50222 -22.11619 -20.12742 -17.99974 -16.66783 -16.14071 -15.80984 -15.20268 -14.95536 -14.33687 -13.92430 -13.71770 -13.47013 -13.01578 -12.52878 -12.42824 -12.23466 -12.06120 -11.85378 -11.56261 -11.21657 -11.02650 -10.92843 -10.73680 -10.67857 -10.57949 -10.27673 -10.10120 -9.90467 -9.57693 -8.89598 -8.45237 -8.30502 -7.28036 -6.05938 -4.10912 3.24549 3.32966 3.36278 3.39180 3.41410 4.38870 4.79840 4.95438 5.14764 5.20905 5.27523 5.39125 5.44978 5.49478 5.57831 5.67528 5.80937 5.92002 5.97033 6.05455 6.09793 6.16772 6.35110 6.38177 6.46409 6.75001 6.89814 6.97688 7.02718 7.38754 7.52044 7.74738 7.93057 8.01284 8.21381 8.44735 8.73589 8.92919 9.54481 11.00695 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.008710 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.381637 B = 3213.793000 C = 3588.983708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.499 3.501 5 O -0.565 6.565 6 C 0.044 3.956 7 N -0.523 5.523 8 C 0.203 3.797 9 H 0.011 0.989 10 C -0.131 4.131 11 C -0.513 4.513 12 H 0.064 0.936 13 C 0.063 3.937 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.043 3.957 20 C 0.103 3.897 21 H 0.081 0.919 22 C -0.159 4.159 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.036 0.964 31 H 0.007 0.993 32 H 0.086 0.914 33 H 0.262 0.738 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 -1.056 5.044 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.288 3.712 5 O -0.443 6.443 6 C -0.087 4.087 7 N -0.246 5.246 8 C 0.098 3.902 9 H 0.029 0.971 10 C -0.189 4.189 11 C -0.551 4.551 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.086 4.086 20 C -0.002 4.002 21 H 0.099 0.901 22 C -0.217 4.217 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.145 0.855 30 H 0.055 0.945 31 H 0.026 0.974 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.595 -0.927 4.547 11.566 hybrid contribution 0.589 -0.858 -0.560 1.182 sum -10.006 -1.785 3.987 10.918 Atomic orbital electron populations 1.22293 0.96347 1.01653 1.02409 1.21302 0.93928 0.83752 1.02731 1.47535 1.65903 1.13801 1.06024 1.21545 0.75815 0.91345 0.82533 1.90611 1.53138 1.65841 1.34732 1.22443 1.01191 0.88489 0.96594 1.62731 1.04027 1.58267 0.99606 1.19430 0.83065 0.92412 0.95341 0.97123 1.21803 1.01998 1.00043 0.95066 1.21106 0.97162 1.35488 1.01350 0.91787 1.24888 0.97900 0.94873 0.96213 1.69861 1.17243 1.36901 1.28963 0.86588 0.79593 0.78529 0.82962 1.20085 1.21306 1.20167 1.22573 0.97265 0.91150 0.97619 1.21743 0.98865 0.95895 0.83734 0.90141 1.22257 0.98420 1.01852 0.99161 0.92543 0.92262 0.92069 0.90060 0.91194 0.89351 0.85533 0.94508 0.97370 0.89564 0.92861 0.89102 0.91324 0.92149 0.92184 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.89 37.16 0.37 -1.79 16 2 C 0.11 1.65 5.32 -4.04 -0.02 1.63 16 3 N -0.60 -10.74 2.57 -166.97 -0.43 -11.17 16 4 C 0.50 10.45 7.02 -11.68 -0.08 10.37 16 5 O -0.56 -13.35 16.30 5.56 0.09 -13.26 16 6 C 0.04 0.89 5.64 -5.19 -0.03 0.86 16 7 N -0.52 -10.64 4.89 -229.50 -1.12 -11.76 16 8 C 0.20 4.86 1.47 -68.87 -0.10 4.76 16 9 H 0.01 0.30 5.70 -51.93 -0.30 0.00 16 10 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 11 C -0.51 -13.77 7.77 -34.44 -0.27 -14.04 16 12 H 0.06 1.71 6.19 -52.48 -0.32 1.39 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 15 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.04 0.70 4.92 -3.67 -0.02 0.69 16 20 C 0.10 1.63 2.53 -68.20 -0.17 1.46 16 21 H 0.08 1.46 6.77 -51.93 -0.35 1.11 16 22 C -0.16 -1.85 7.70 37.16 0.29 -1.57 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.70 5.22 -51.93 -0.27 0.43 16 26 H 0.08 1.44 7.21 -51.93 -0.37 1.06 16 27 H 0.07 0.96 7.22 -51.93 -0.38 0.59 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.13 2.85 5.60 -51.93 -0.29 2.56 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.01 0.15 6.64 -51.93 -0.35 -0.20 16 32 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.09 1.39 6.72 -51.93 -0.35 1.05 16 35 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.06 0.67 7.04 -51.93 -0.37 0.31 16 37 H 0.06 0.66 6.30 -51.93 -0.33 0.33 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -30.08 286.13 -7.00 -37.08 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.65 Total: 1.45 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 0.20 Total: 1.31 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.92 Total: -47.32 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.08 -7.00 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.198 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds