Wall clock time and date at job start Mon Mar 30 2020 03:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47109 * 2 1 4 4 C 1.33716 * 118.53639 * 270.02139 * 3 2 1 5 5 O 1.21278 * 118.62395 * 358.28569 * 4 3 2 6 6 C 1.50249 * 122.75312 * 178.29407 * 4 3 2 7 7 N 1.46906 * 109.97974 * 17.19846 * 6 4 3 8 8 C 1.46896 * 111.00071 * 73.06789 * 7 6 4 9 9 H 1.09002 * 109.47220 * 292.11172 * 8 7 6 10 10 C 1.53000 * 109.47053 * 172.10816 * 8 7 6 11 11 C 1.50703 * 109.46997 * 52.11192 * 8 7 6 12 12 H 1.08003 * 119.99742 * 359.97438 * 11 8 7 13 13 C 1.37873 * 119.99873 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99975 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47061 * 59.99778 * 15 13 11 17 17 H 1.48494 * 109.47452 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46988 * 300.00348 * 15 13 11 19 19 C 1.47192 * 110.17263 * 309.70361 * 7 6 4 20 20 C 1.46011 * 118.53625 * 90.00073 * 3 2 1 21 21 H 1.09001 * 109.37356 * 78.00566 * 20 3 2 22 22 C 1.52999 * 109.37207 * 318.35621 * 20 3 2 23 23 H 1.09002 * 109.46781 * 59.99938 * 1 2 3 24 24 H 1.08997 * 109.47404 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47287 * 299.99957 * 1 2 3 26 26 H 1.09001 * 109.47287 * 240.00043 * 2 1 3 27 27 H 1.09001 * 109.47402 * 119.99629 * 2 1 3 28 28 H 1.08998 * 109.38617 * 257.04701 * 6 4 3 29 29 H 1.08998 * 109.39072 * 137.35231 * 6 4 3 30 30 H 1.08992 * 109.47399 * 300.00238 * 10 8 7 31 31 H 1.09004 * 109.46724 * 60.00724 * 10 8 7 32 32 H 1.09001 * 109.47194 * 180.02562 * 10 8 7 33 33 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.59701 * 188.77325 * 19 7 6 35 35 H 1.09005 * 109.59343 * 309.22759 * 19 7 6 36 36 H 1.08993 * 109.47536 * 299.41606 * 22 20 3 37 37 H 1.08999 * 109.46944 * 59.42187 * 22 20 3 38 38 H 1.09001 * 109.46839 * 179.41875 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2308 1.9837 -1.1747 5 8 2.0414 1.3535 -2.1935 6 6 2.6946 3.4085 -1.2854 7 7 3.2505 3.8566 -0.0016 8 6 4.5618 3.2430 0.2472 9 1 4.4369 2.1726 0.4107 10 6 5.1949 3.8779 1.4870 11 6 5.4560 3.4681 -0.9447 12 1 5.0870 4.0123 -1.8015 13 6 6.7453 2.9795 -0.9413 14 7 7.1948 2.3173 0.1022 15 14 7.8535 3.2579 -2.4190 16 1 8.0231 4.7162 -2.6428 17 1 9.1791 2.6377 -2.1675 18 1 7.2390 2.6408 -3.6219 19 6 2.3113 3.5555 1.0910 20 6 2.2508 2.0389 1.2827 21 1 3.1941 1.6895 1.7025 22 6 1.1115 1.6938 2.2439 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8510 4.0436 -1.5558 29 1 3.4616 3.4805 -2.0566 30 1 5.3198 4.9482 1.3235 31 1 4.5481 3.7150 2.3491 32 1 6.1681 3.4229 1.6714 33 1 8.1017 1.9732 0.1044 34 1 2.6574 4.0267 2.0109 35 1 1.3206 3.9314 0.8355 36 1 0.1671 2.0464 1.8295 37 1 1.0671 0.6134 2.3816 38 1 1.2888 2.1756 3.2054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261028425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:19 Heat of formation + Delta-G solvation = -40.828245 kcal Electronic energy + Delta-G solvation = -18888.840257 eV Core-core repulsion = 16151.848553 eV Total energy + Delta-G solvation = -2736.991704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.91374 -38.68216 -37.20220 -34.91400 -32.71171 -31.86383 -30.76088 -28.65238 -26.85786 -25.59269 -23.88578 -23.46264 -21.80196 -19.65464 -18.27022 -17.76833 -17.47954 -16.83130 -16.53451 -15.99365 -15.66887 -15.17388 -14.76258 -14.54176 -13.91546 -13.83615 -13.65723 -13.40692 -13.25166 -12.93232 -12.81714 -12.61214 -12.50333 -12.46634 -12.30691 -12.04087 -11.94252 -11.79221 -11.60188 -11.28796 -10.83123 -10.50689 -9.73852 -8.92658 -8.14349 -6.24311 1.39326 1.40909 1.47458 1.62379 2.01988 2.40022 3.13985 3.28603 3.58212 3.93554 4.02284 4.12393 4.21260 4.30428 4.45364 4.52668 4.58522 4.68578 4.77272 4.81620 4.90608 4.97676 5.00313 5.06408 5.09346 5.18381 5.24524 5.36058 5.51336 5.56121 5.67271 5.78604 6.16735 6.26871 6.44786 6.63268 6.87224 7.16421 7.43932 8.90762 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.008710 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.381637 B = 3213.793000 C = 3588.983708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.596 5.596 4 C 0.489 3.511 5 O -0.604 6.604 6 C 0.046 3.954 7 N -0.526 5.526 8 C 0.212 3.788 9 H -0.018 1.018 10 C -0.119 4.119 11 C -0.529 4.529 12 H 0.057 0.943 13 C 0.016 3.984 14 N -0.914 5.914 15 Si 0.949 3.051 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.281 1.281 19 C 0.041 3.959 20 C 0.100 3.900 21 H 0.055 0.945 22 C -0.149 4.149 23 H 0.035 0.965 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.261 0.739 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 -0.661 6.463 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 N -0.328 5.328 4 C 0.278 3.722 5 O -0.486 6.486 6 C -0.085 4.085 7 N -0.249 5.249 8 C 0.105 3.895 9 H 0.000 1.000 10 C -0.178 4.178 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.183 4.183 14 N -0.554 5.554 15 Si 0.775 3.225 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.088 4.088 20 C -0.004 4.004 21 H 0.073 0.927 22 C -0.206 4.206 23 H 0.054 0.946 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.115 0.885 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.248 -0.526 6.009 13.653 hybrid contribution 1.068 -1.003 -0.968 1.755 sum -11.181 -1.528 5.042 12.359 Atomic orbital electron populations 1.22191 0.93609 1.03238 1.02357 1.21505 0.96137 0.82411 1.02280 1.47681 1.64513 1.14629 1.05961 1.21700 0.75828 0.91670 0.83047 1.90583 1.55137 1.66696 1.36201 1.22369 1.01220 0.89021 0.95883 1.62648 1.03601 1.57787 1.00911 1.19148 0.84694 0.91005 0.94605 1.00018 1.21607 1.01099 0.99167 0.95888 1.21490 0.97869 1.34993 1.02326 0.92450 1.25583 0.99280 0.94990 0.98453 1.69975 1.17409 1.37716 1.30260 0.85746 0.78055 0.78751 0.79938 1.19155 1.20786 1.20723 1.22767 0.97537 0.91719 0.96730 1.21848 0.99772 0.95365 0.83405 0.92677 1.22198 0.96777 1.02874 0.98794 0.94604 0.89952 0.89923 0.93055 0.89112 0.86392 0.88549 0.94867 0.94224 0.92391 0.92996 0.87606 0.88651 0.90878 0.91193 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.89 71.98 0.71 -2.89 16 2 C 0.10 2.98 5.32 86.38 0.46 3.44 16 3 N -0.60 -20.83 2.57 -801.17 -2.06 -22.89 16 4 C 0.49 20.61 7.02 87.68 0.62 21.22 16 5 O -0.60 -29.38 16.30 -3.02 -0.05 -29.43 16 6 C 0.05 1.86 5.64 85.41 0.48 2.34 16 7 N -0.53 -20.91 4.89 -880.02 -4.30 -25.21 16 8 C 0.21 10.21 1.47 44.17 0.06 10.27 16 9 H -0.02 -0.94 5.70 -2.39 -0.01 -0.96 16 10 C -0.12 -5.44 8.87 71.98 0.64 -4.81 16 11 C -0.53 -28.93 7.77 25.60 0.20 -28.73 16 12 H 0.06 3.15 6.19 -2.91 -0.02 3.13 16 13 C 0.02 0.90 5.30 84.65 0.45 1.35 16 14 N -0.91 -52.27 11.32 21.44 0.24 -52.03 16 15 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 19 C 0.04 1.21 4.92 86.24 0.42 1.64 16 20 C 0.10 2.97 2.53 45.08 0.11 3.08 16 21 H 0.06 1.94 6.77 -2.39 -0.02 1.92 16 22 C -0.15 -2.84 7.70 71.98 0.55 -2.28 16 23 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 1.55 5.22 -2.39 -0.01 1.54 16 26 H 0.05 1.85 7.21 -2.39 -0.02 1.83 16 27 H 0.09 2.33 7.22 -2.39 -0.02 2.31 16 28 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 29 H 0.10 4.48 5.60 -2.39 -0.01 4.47 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.50 6.64 -2.39 -0.02 1.49 16 32 H 0.06 2.99 6.07 -2.39 -0.01 2.97 16 33 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.11 2.86 6.72 -2.39 -0.02 2.84 16 35 H 0.10 2.38 8.06 -2.38 -0.02 2.37 16 36 H 0.07 1.26 7.04 -2.39 -0.02 1.24 16 37 H 0.07 1.23 6.30 -2.39 -0.02 1.22 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -66.97 286.13 1.62 -65.35 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.05 Total: 12.87 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 4.71 Total: 4.64 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -6.12 Total: -100.13 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.43 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.97 1.62 -65.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.522 kcal (2) G-P(sol) polarization free energy of solvation -66.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds