Wall clock time and date at job start Mon Mar 30 2020 03:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46684 * 2 1 4 4 C 1.33716 * 118.53993 * 90.00607 * 3 2 1 5 5 O 1.21287 * 118.62169 * 1.65515 * 4 3 2 6 6 C 1.50254 * 122.75606 * 181.68967 * 4 3 2 7 7 N 1.46906 * 109.97451 * 342.76792 * 6 4 3 8 8 C 1.46907 * 110.99918 * 173.66971 * 7 6 4 9 9 H 1.09001 * 109.46999 * 296.05100 * 8 7 6 10 10 C 1.52992 * 109.46860 * 176.04583 * 8 7 6 11 11 C 1.50699 * 109.46903 * 56.04244 * 8 7 6 12 12 H 1.07997 * 120.00584 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99601 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00205 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99707 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.46977 * 90.00390 * 15 13 11 17 17 H 1.48501 * 109.47022 * 209.99918 * 15 13 11 18 18 H 1.48498 * 109.47298 * 330.00476 * 15 13 11 19 19 C 1.47189 * 110.17626 * 50.30251 * 7 6 4 20 20 C 1.46014 * 118.53634 * 269.97511 * 3 2 1 21 21 H 1.08997 * 109.37563 * 281.92377 * 20 3 2 22 22 C 1.53001 * 109.37255 * 41.69370 * 20 3 2 23 23 H 1.09000 * 109.47373 * 299.99686 * 1 2 3 24 24 H 1.08995 * 109.47423 * 60.00158 * 1 2 3 25 25 H 1.09002 * 109.46803 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46793 * 239.99884 * 2 1 3 27 27 H 1.09002 * 109.47081 * 119.99745 * 2 1 3 28 28 H 1.09001 * 109.38580 * 222.61406 * 6 4 3 29 29 H 1.08998 * 109.39320 * 102.92162 * 6 4 3 30 30 H 1.09010 * 109.47072 * 180.02562 * 10 8 7 31 31 H 1.09003 * 109.47175 * 299.99561 * 10 8 7 32 32 H 1.08998 * 109.47622 * 60.00000 * 10 8 7 33 33 H 0.96998 * 119.99797 * 179.97438 * 14 13 11 34 34 H 1.09003 * 109.58895 * 50.77196 * 19 7 6 35 35 H 1.09000 * 109.59611 * 171.22675 * 19 7 6 36 36 H 1.08999 * 109.47393 * 59.99562 * 22 20 3 37 37 H 1.09003 * 109.46786 * 179.97438 * 22 20 3 38 38 H 1.09005 * 109.46794 * 299.99682 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2313 1.9835 1.1747 5 8 2.0413 1.3535 2.1935 6 6 2.6954 3.4083 1.2854 7 7 3.2516 3.8561 0.0016 8 6 3.5744 5.2888 0.0388 9 1 2.6588 5.8640 0.1759 10 6 4.2404 5.6957 -1.2771 11 6 4.5154 5.5621 1.1837 12 1 4.8415 4.7525 1.8198 13 6 4.9610 6.8456 1.4184 14 7 4.5644 7.8314 0.6435 15 14 6.1280 7.1843 2.8372 16 1 7.5303 7.0493 2.3677 17 1 5.9058 8.5629 3.3426 18 1 5.8756 6.2101 3.9291 19 6 2.3126 3.5551 -1.0912 20 6 2.2512 2.0387 -1.2828 21 1 3.1953 1.6902 -1.7015 22 6 1.1117 1.6943 -2.2439 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.4622 3.4801 2.0567 29 1 1.8520 4.0437 1.5556 30 1 4.4803 6.7587 -1.2494 31 1 5.1560 5.1205 -1.4141 32 1 3.5598 5.4980 -2.1052 33 1 4.8775 8.7344 0.8089 34 1 1.3220 3.9315 -0.8358 35 1 2.6591 4.0261 -2.0110 36 1 0.1662 2.0384 -1.8247 37 1 1.2839 2.1848 -3.2020 38 1 1.0731 0.6148 -2.3897 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261028430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:27 Heat of formation + Delta-G solvation = -24.799810 kcal Electronic energy + Delta-G solvation = -18367.428373 eV Core-core repulsion = 15631.131715 eV Total energy + Delta-G solvation = -2736.296659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25657 -37.06021 -36.02912 -33.11964 -31.57280 -30.55090 -29.07453 -27.15797 -25.11024 -24.35115 -22.52358 -21.94950 -19.75119 -18.28229 -16.90595 -16.26936 -16.02297 -15.24478 -14.84504 -14.38563 -14.01624 -13.80903 -13.54719 -12.89739 -12.80751 -12.56223 -12.40608 -12.06590 -12.02888 -11.66199 -11.33086 -11.07748 -11.01559 -10.80849 -10.67268 -10.61486 -10.45288 -10.18891 -9.96105 -9.17931 -8.96971 -8.48759 -8.44996 -7.43876 -6.07595 -4.13000 3.06342 3.28272 3.29955 3.36294 3.40745 4.35310 4.64915 4.88154 4.95178 5.15376 5.26161 5.29247 5.35852 5.45774 5.46756 5.64566 5.68440 5.80609 5.92742 5.98237 6.05429 6.11496 6.26980 6.30932 6.41799 6.71913 6.76837 6.94223 6.98146 7.35957 7.50066 7.74049 7.79459 7.97694 8.19320 8.43240 8.57802 8.92466 9.53104 10.99052 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035691 B = 0.006873 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.321343 B = 4072.923238 C = 4671.298976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.524 3.476 5 O -0.564 6.564 6 C 0.051 3.949 7 N -0.526 5.526 8 C 0.211 3.789 9 H 0.003 0.997 10 C -0.132 4.132 11 C -0.510 4.510 12 H 0.064 0.936 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.034 3.966 20 C 0.146 3.854 21 H 0.078 0.922 22 C -0.163 4.163 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.036 0.964 32 H 0.009 0.991 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 -10.508 -6.444 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.313 3.687 5 O -0.443 6.443 6 C -0.079 4.079 7 N -0.253 5.253 8 C 0.106 3.894 9 H 0.020 0.980 10 C -0.190 4.190 11 C -0.548 4.548 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.095 4.095 20 C 0.042 3.958 21 H 0.096 0.904 22 C -0.221 4.221 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.136 0.864 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.065 -10.860 -6.008 13.814 hybrid contribution -0.117 0.780 0.758 1.094 sum -6.182 -10.080 -5.250 12.938 Atomic orbital electron populations 1.22315 0.96263 1.01786 1.02656 1.21335 0.94187 0.83505 1.02688 1.47615 1.65649 1.13823 1.06251 1.20681 0.75734 0.89779 0.82491 1.90643 1.53523 1.65295 1.34807 1.22119 1.00431 0.89554 0.95808 1.62717 1.38986 1.22821 1.00740 1.19330 0.95130 0.79622 0.95346 0.97964 1.21855 0.98348 1.04068 0.94776 1.21123 1.27720 0.93479 1.12483 0.91789 1.24913 0.96403 0.96082 0.96592 1.69879 1.44722 1.00264 1.38227 0.86503 0.81135 0.77462 0.82400 1.20594 1.21284 1.19777 1.22561 0.95467 0.93104 0.98388 1.21114 0.98205 0.93415 0.83080 0.90428 1.22304 0.98641 1.01835 0.99339 0.92435 0.91956 0.92148 0.91019 0.90003 0.86377 0.92019 0.89410 0.94455 0.97175 0.92870 0.94954 0.88658 0.92012 0.91213 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.90 37.16 0.37 -1.59 16 2 C 0.11 1.37 5.32 -4.04 -0.02 1.35 16 3 N -0.60 -9.42 2.74 -166.98 -0.46 -9.88 16 4 C 0.52 10.09 7.56 -11.67 -0.09 10.00 16 5 O -0.56 -12.21 16.31 5.55 0.09 -12.11 16 6 C 0.05 1.06 5.10 -5.19 -0.03 1.03 16 7 N -0.53 -10.85 4.59 -229.51 -1.05 -11.91 16 8 C 0.21 5.08 2.03 -68.87 -0.14 4.94 16 9 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 10 C -0.13 -3.04 8.81 37.15 0.33 -2.71 16 11 C -0.51 -13.55 7.99 -34.44 -0.28 -13.83 16 12 H 0.06 1.72 6.41 -52.49 -0.34 1.38 16 13 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -24.69 11.32 55.43 0.63 -24.07 16 15 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.03 0.56 4.73 -3.68 -0.02 0.54 16 20 C 0.15 2.02 3.49 -68.21 -0.24 1.79 16 21 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 22 C -0.16 -1.68 7.69 37.16 0.29 -1.40 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.64 5.21 -51.93 -0.27 0.37 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.75 7.23 -51.93 -0.38 0.38 16 27 H 0.08 1.19 7.21 -51.93 -0.37 0.82 16 28 H 0.12 2.62 6.47 -51.93 -0.34 2.29 16 29 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 30 H 0.09 2.23 6.07 -51.92 -0.32 1.92 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.01 0.19 6.19 -51.93 -0.32 -0.13 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.10 1.52 5.81 -51.93 -0.30 1.22 16 36 H 0.06 0.66 7.00 -51.93 -0.36 0.30 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.56 6.35 -51.93 -0.33 0.23 16 LS Contribution 291.00 15.07 4.39 4.39 Total: -1.00 -29.32 291.00 -7.18 -36.50 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.83 Total: -0.69 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 0.08 Total: 1.70 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.88 Total: -45.85 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.32 -7.18 -36.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.704 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds