Wall clock time and date at job start Mon Mar 30 2020 03:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46684 * 2 1 4 4 C 1.33716 * 118.53993 * 90.00607 * 3 2 1 5 5 O 1.21287 * 118.62169 * 1.65515 * 4 3 2 6 6 C 1.50254 * 122.75606 * 181.68967 * 4 3 2 7 7 N 1.46906 * 109.97451 * 342.76792 * 6 4 3 8 8 C 1.46907 * 110.99918 * 173.66971 * 7 6 4 9 9 H 1.09001 * 109.46999 * 296.05100 * 8 7 6 10 10 C 1.52992 * 109.46860 * 176.04583 * 8 7 6 11 11 C 1.50699 * 109.46903 * 56.04244 * 8 7 6 12 12 H 1.07997 * 120.00584 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99601 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00205 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99707 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.46977 * 90.00390 * 15 13 11 17 17 H 1.48501 * 109.47022 * 209.99918 * 15 13 11 18 18 H 1.48498 * 109.47298 * 330.00476 * 15 13 11 19 19 C 1.47189 * 110.17626 * 50.30251 * 7 6 4 20 20 C 1.46014 * 118.53634 * 269.97511 * 3 2 1 21 21 H 1.08997 * 109.37563 * 281.92377 * 20 3 2 22 22 C 1.53001 * 109.37255 * 41.69370 * 20 3 2 23 23 H 1.09000 * 109.47373 * 299.99686 * 1 2 3 24 24 H 1.08995 * 109.47423 * 60.00158 * 1 2 3 25 25 H 1.09002 * 109.46803 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46793 * 239.99884 * 2 1 3 27 27 H 1.09002 * 109.47081 * 119.99745 * 2 1 3 28 28 H 1.09001 * 109.38580 * 222.61406 * 6 4 3 29 29 H 1.08998 * 109.39320 * 102.92162 * 6 4 3 30 30 H 1.09010 * 109.47072 * 180.02562 * 10 8 7 31 31 H 1.09003 * 109.47175 * 299.99561 * 10 8 7 32 32 H 1.08998 * 109.47622 * 60.00000 * 10 8 7 33 33 H 0.96998 * 119.99797 * 179.97438 * 14 13 11 34 34 H 1.09003 * 109.58895 * 50.77196 * 19 7 6 35 35 H 1.09000 * 109.59611 * 171.22675 * 19 7 6 36 36 H 1.08999 * 109.47393 * 59.99562 * 22 20 3 37 37 H 1.09003 * 109.46786 * 179.97438 * 22 20 3 38 38 H 1.09005 * 109.46794 * 299.99682 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2313 1.9835 1.1747 5 8 2.0413 1.3535 2.1935 6 6 2.6954 3.4083 1.2854 7 7 3.2516 3.8561 0.0016 8 6 3.5744 5.2888 0.0388 9 1 2.6588 5.8640 0.1759 10 6 4.2404 5.6957 -1.2771 11 6 4.5154 5.5621 1.1837 12 1 4.8415 4.7525 1.8198 13 6 4.9610 6.8456 1.4184 14 7 4.5644 7.8314 0.6435 15 14 6.1280 7.1843 2.8372 16 1 7.5303 7.0493 2.3677 17 1 5.9058 8.5629 3.3426 18 1 5.8756 6.2101 3.9291 19 6 2.3126 3.5551 -1.0912 20 6 2.2512 2.0387 -1.2828 21 1 3.1953 1.6902 -1.7015 22 6 1.1117 1.6943 -2.2439 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.4622 3.4801 2.0567 29 1 1.8520 4.0437 1.5556 30 1 4.4803 6.7587 -1.2494 31 1 5.1560 5.1205 -1.4141 32 1 3.5598 5.4980 -2.1052 33 1 4.8775 8.7344 0.8089 34 1 1.3220 3.9315 -0.8358 35 1 2.6591 4.0261 -2.0110 36 1 0.1662 2.0384 -1.8247 37 1 1.2839 2.1848 -3.2020 38 1 1.0731 0.6148 -2.3897 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261028430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:27 Heat of formation + Delta-G solvation = -44.575540 kcal Electronic energy + Delta-G solvation = -18368.285913 eV Core-core repulsion = 15631.131715 eV Total energy + Delta-G solvation = -2737.154199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.67755 -38.67487 -37.44643 -34.94316 -32.87143 -32.00373 -30.60360 -28.64030 -26.95517 -25.82602 -23.75142 -23.18257 -21.56697 -19.63964 -18.65538 -17.78572 -17.62579 -16.67222 -16.55559 -15.87841 -15.65560 -15.30993 -14.75351 -14.47234 -14.15794 -13.85320 -13.61134 -13.35778 -13.26587 -13.18725 -12.86853 -12.64011 -12.59347 -12.34674 -12.25787 -12.17877 -12.04488 -11.81853 -11.59606 -10.92671 -10.72088 -10.52669 -9.72863 -9.16264 -8.13991 -6.25445 1.41360 1.42873 1.52457 1.52978 2.01361 2.40953 3.04606 3.17911 3.57446 3.81137 4.12079 4.16088 4.21404 4.34587 4.42353 4.53060 4.59193 4.63530 4.69336 4.82718 4.86948 4.96422 5.01546 5.05364 5.11273 5.14943 5.28436 5.40965 5.46405 5.55038 5.69715 5.73298 6.13665 6.25018 6.38838 6.58924 6.85658 7.10503 7.43867 8.91521 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035691 B = 0.006873 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.321343 B = 4072.923238 C = 4671.298976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.522 3.478 5 O -0.595 6.595 6 C 0.055 3.945 7 N -0.530 5.530 8 C 0.216 3.784 9 H -0.028 1.028 10 C -0.120 4.120 11 C -0.526 4.526 12 H 0.054 0.946 13 C 0.018 3.982 14 N -0.915 5.915 15 Si 0.954 3.046 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.274 1.274 19 C 0.031 3.969 20 C 0.145 3.855 21 H 0.087 0.913 22 C -0.155 4.155 23 H 0.027 0.973 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.030 0.970 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 -12.048 -8.246 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.324 5.324 4 C 0.311 3.689 5 O -0.477 6.477 6 C -0.075 4.075 7 N -0.256 5.256 8 C 0.109 3.891 9 H -0.011 1.011 10 C -0.178 4.178 11 C -0.564 4.564 12 H 0.072 0.928 13 C -0.181 4.181 14 N -0.554 5.554 15 Si 0.780 3.220 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.098 4.098 20 C 0.043 3.957 21 H 0.105 0.895 22 C -0.212 4.212 23 H 0.047 0.953 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.476 -12.425 -7.856 16.063 hybrid contribution -0.025 1.228 1.273 1.768 sum -6.501 -11.197 -6.584 14.525 Atomic orbital electron populations 1.22266 0.94775 1.03293 1.01968 1.21607 0.95367 0.81579 1.03540 1.47714 1.64018 1.14926 1.05697 1.20324 0.76122 0.89033 0.83447 1.90622 1.55247 1.65679 1.36159 1.21937 0.99228 0.90965 0.95419 1.62629 1.40780 1.20388 1.01768 1.19125 0.93331 0.81349 0.95265 1.01092 1.21655 0.98773 1.02150 0.95220 1.21393 1.28226 0.93441 1.13386 0.92828 1.25596 0.97801 0.95992 0.98711 1.69983 1.45579 1.00476 1.39364 0.85617 0.79465 0.77233 0.79695 1.19952 1.20768 1.19939 1.22732 0.94375 0.95589 0.97068 1.21297 1.00599 0.91048 0.82805 0.89463 1.22269 0.96518 1.03604 0.98851 0.95330 0.90370 0.89598 0.87355 0.91941 0.88929 0.93098 0.92010 0.94726 0.93996 0.92786 0.95154 0.87525 0.92274 0.89171 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 9.90 71.98 0.71 -2.57 16 2 C 0.10 2.33 5.32 86.38 0.46 2.79 16 3 N -0.59 -17.55 2.74 -801.18 -2.19 -19.74 16 4 C 0.52 20.27 7.56 87.68 0.66 20.94 16 5 O -0.60 -26.33 16.31 -3.05 -0.05 -26.38 16 6 C 0.06 2.36 5.10 85.42 0.44 2.80 16 7 N -0.53 -21.93 4.59 -880.03 -4.04 -25.97 16 8 C 0.22 10.57 2.03 44.16 0.09 10.66 16 9 H -0.03 -1.55 8.14 -2.39 -0.02 -1.56 16 10 C -0.12 -5.46 8.81 71.98 0.63 -4.83 16 11 C -0.53 -28.70 7.99 25.60 0.20 -28.49 16 12 H 0.05 2.97 6.41 -2.91 -0.02 2.96 16 13 C 0.02 1.01 5.30 84.66 0.45 1.45 16 14 N -0.91 -51.40 11.32 21.45 0.24 -51.16 16 15 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 19 C 0.03 0.97 4.73 86.24 0.41 1.37 16 20 C 0.15 3.60 3.49 45.07 0.16 3.76 16 21 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 22 C -0.15 -2.48 7.69 71.98 0.55 -1.93 16 23 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.08 1.31 5.21 -2.39 -0.01 1.29 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.11 1.76 7.23 -2.39 -0.02 1.74 16 27 H 0.06 1.73 7.21 -2.39 -0.02 1.71 16 28 H 0.09 4.36 6.47 -2.39 -0.02 4.34 16 29 H 0.05 2.23 8.12 -2.39 -0.02 2.21 16 30 H 0.06 3.16 6.07 -2.38 -0.01 3.14 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.59 6.19 -2.39 -0.01 1.58 16 33 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 35 H 0.11 3.12 5.81 -2.39 -0.01 3.11 16 36 H 0.06 1.02 7.00 -2.39 -0.02 1.00 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.04 6.35 -2.38 -0.02 1.02 16 Total: -1.00 -65.08 291.00 1.79 -63.29 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.04 Total: 8.17 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 4.77 Total: 5.96 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -5.99 Total: -96.87 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -65.08 1.79 -63.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.710 kcal (2) G-P(sol) polarization free energy of solvation -65.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds