Wall clock time and date at job start Mon Mar 30 2020 03:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46862 * 2 1 4 4 C 1.33556 * 119.89870 * 270.23833 * 3 2 1 5 5 O 1.21281 * 120.06949 * 359.68195 * 4 3 2 6 6 C 1.51492 * 119.88074 * 179.97438 * 4 3 2 7 7 C 1.53144 * 108.38091 * 289.77711 * 6 4 3 8 8 N 1.45581 * 110.69369 * 84.13970 * 7 6 4 9 9 C 1.46897 * 111.00434 * 163.86496 * 8 7 6 10 10 C 1.50699 * 109.47096 * 300.59643 * 9 8 7 11 11 H 1.07998 * 120.00075 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99935 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99631 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 119.99970 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47439 * 59.99784 * 14 12 10 16 16 H 1.48505 * 109.47140 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47321 * 299.99620 * 14 12 10 18 18 C 1.45564 * 116.01687 * 291.78795 * 8 7 6 19 19 C 1.47257 * 119.94901 * 89.99808 * 3 2 1 20 20 H 1.08998 * 109.62384 * 130.75280 * 19 3 2 21 21 C 1.53006 * 109.62201 * 10.38726 * 19 3 2 22 22 H 1.09010 * 109.46791 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47633 * 299.99824 * 1 2 3 24 24 H 1.08996 * 109.47209 * 60.00672 * 1 2 3 25 25 H 1.08996 * 109.47633 * 240.00175 * 2 1 3 26 26 H 1.08995 * 109.47403 * 119.99846 * 2 1 3 27 27 H 1.09000 * 109.68623 * 170.05134 * 6 4 3 28 28 H 1.09002 * 109.68174 * 49.49625 * 6 4 3 29 29 H 1.09001 * 109.22581 * 323.83141 * 7 6 4 30 30 H 1.08995 * 109.23496 * 204.46065 * 7 6 4 31 31 H 1.09007 * 109.46432 * 60.58870 * 9 8 7 32 32 H 1.08994 * 109.47143 * 180.58484 * 9 8 7 33 33 H 0.96998 * 119.99592 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.20016 * 308.09804 * 18 8 7 35 35 H 1.08994 * 109.16252 * 188.77470 * 18 8 7 36 36 H 1.09001 * 109.46998 * 300.36577 * 21 19 3 37 37 H 1.09000 * 109.47050 * 60.36869 * 21 19 3 38 38 H 1.09001 * 109.46801 * 180.36981 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2356 2.0105 -1.1578 5 8 2.0347 1.4378 -2.2078 6 6 2.7399 3.4390 -1.1573 7 6 1.6129 4.3489 -0.6600 8 7 1.5884 4.3891 0.7950 9 6 0.7899 5.5240 1.2769 10 6 1.3786 6.8097 0.7560 11 1 2.2582 6.7862 0.1298 12 6 0.7942 8.0161 1.0787 13 7 -0.2773 8.0447 1.8407 14 14 1.5243 9.6098 0.4335 15 1 1.5157 9.5928 -1.0514 16 1 0.7162 10.7570 0.9196 17 1 2.9210 9.7466 0.9189 18 6 1.1971 3.1556 1.4614 19 6 2.2632 2.0744 1.2759 20 1 3.2509 2.5350 1.2586 21 6 2.1843 1.0715 2.4289 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 3.0257 3.7278 -2.1688 28 1 3.6004 3.5243 -0.4937 29 1 0.6583 3.9699 -1.0249 30 1 1.7690 5.3567 -1.0446 31 1 -0.2356 5.4236 0.9213 32 1 0.7969 5.5364 2.3668 33 1 -0.6887 8.8934 2.0675 34 1 0.2544 2.8047 1.0414 35 1 1.0651 3.3502 2.5256 36 1 1.1958 0.6125 2.4441 37 1 2.9414 0.2995 2.2913 38 1 2.3595 1.5883 3.3725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:38 Heat of formation + Delta-G solvation = -31.599929 kcal Electronic energy + Delta-G solvation = -18314.481050 eV Core-core repulsion = 15577.889516 eV Total energy + Delta-G solvation = -2736.591534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28127 -37.13480 -35.92281 -32.84710 -31.83096 -31.37456 -29.32280 -27.42166 -25.32189 -23.44799 -22.67601 -21.70756 -20.18032 -18.48443 -17.13364 -16.41276 -16.11963 -15.18240 -14.71285 -14.68560 -14.08957 -13.84154 -13.49993 -13.13211 -12.82479 -12.66534 -12.52582 -12.22460 -12.01886 -11.69290 -11.58675 -11.29398 -11.03534 -10.96761 -10.80806 -10.71285 -10.60274 -10.52427 -9.88658 -9.32817 -9.26056 -8.49306 -8.48572 -7.24404 -6.07622 -4.09741 2.94100 3.18749 3.31238 3.35643 3.38096 4.36344 4.62737 4.73521 5.03198 5.14611 5.15552 5.28458 5.30600 5.30926 5.43688 5.62793 5.65123 5.74807 5.80544 5.81967 5.83354 5.97699 6.01448 6.12067 6.25408 6.36447 6.48824 6.65333 6.73276 7.24569 7.32362 7.59902 7.74738 8.06864 8.12895 8.45952 8.51767 8.97222 9.54938 11.03030 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035144 B = 0.006337 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.535225 B = 4417.499963 C = 4784.103720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.606 5.606 4 C 0.517 3.483 5 O -0.561 6.561 6 C -0.138 4.138 7 C 0.084 3.916 8 N -0.564 5.564 9 C 0.203 3.797 10 C -0.514 4.514 11 H 0.065 0.935 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.057 3.943 19 C 0.136 3.864 20 H 0.093 0.907 21 C -0.156 4.156 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.018 0.982 30 H 0.103 0.897 31 H -0.010 1.010 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.026 0.974 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -13.364 0.646 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.340 5.340 4 C 0.306 3.694 5 O -0.441 6.441 6 C -0.179 4.179 7 C -0.045 4.045 8 N -0.289 5.289 9 C 0.078 3.922 10 C -0.552 4.552 11 H 0.083 0.917 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.073 4.073 19 C 0.033 3.967 20 H 0.111 0.889 21 C -0.213 4.213 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.036 0.964 30 H 0.121 0.879 31 H 0.007 0.993 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.398 -13.471 0.316 14.174 hybrid contribution -0.617 0.817 -0.405 1.101 sum 3.782 -12.653 -0.089 13.207 Atomic orbital electron populations 1.22148 0.96155 1.01689 1.02507 1.21448 0.94407 0.83204 1.02854 1.48121 1.65499 1.13758 1.06592 1.20883 0.76672 0.88976 0.82838 1.90646 1.53622 1.68402 1.31390 1.22199 1.01021 0.90835 1.03818 1.21520 0.94316 1.00348 0.88303 1.59522 1.59474 1.03983 1.05918 1.19626 0.90387 0.86326 0.95830 1.21156 1.12480 0.90254 1.31324 0.91686 1.24988 0.94960 0.99306 0.95221 1.69946 1.20552 1.26382 1.36780 0.86559 0.79121 0.82523 0.79210 1.20220 1.21364 1.20109 1.22129 0.95042 0.90220 0.99890 1.21557 1.00517 0.92385 0.82256 0.88914 1.22065 1.02307 0.99084 0.97880 0.92024 0.92420 0.92397 0.90365 0.90196 0.88773 0.88573 0.96406 0.87925 0.99258 0.95029 0.92801 0.95619 0.90101 0.91843 0.92015 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.12 37.16 0.38 -1.63 16 2 C 0.10 1.27 5.45 -4.04 -0.02 1.25 16 3 N -0.61 -8.81 2.49 -165.57 -0.41 -9.23 16 4 C 0.52 8.92 6.82 -11.14 -0.08 8.84 16 5 O -0.56 -11.28 16.64 5.56 0.09 -11.18 16 6 C -0.14 -2.27 5.62 -27.42 -0.15 -2.43 16 7 C 0.08 1.62 5.15 -4.46 -0.02 1.60 16 8 N -0.56 -11.39 4.22 -238.24 -1.01 -12.39 16 9 C 0.20 5.05 4.79 -4.98 -0.02 5.02 16 10 C -0.51 -13.81 8.24 -34.44 -0.28 -14.09 16 11 H 0.07 1.70 6.77 -52.49 -0.36 1.35 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 14 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.06 0.95 4.86 -4.56 -0.02 0.93 16 19 C 0.14 1.83 2.89 -67.53 -0.20 1.63 16 20 H 0.09 1.28 7.03 -51.93 -0.36 0.91 16 21 C -0.16 -1.55 7.75 37.16 0.29 -1.26 16 22 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.06 0.69 7.40 -51.93 -0.38 0.30 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 1.04 7.40 -51.93 -0.38 0.66 16 26 H 0.08 0.77 5.69 -51.93 -0.30 0.48 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.10 1.47 7.07 -51.93 -0.37 1.10 16 29 H 0.02 0.37 7.87 -51.93 -0.41 -0.04 16 30 H 0.10 2.14 6.01 -51.93 -0.31 1.83 16 31 H -0.01 -0.28 8.14 -51.93 -0.42 -0.71 16 32 H 0.03 0.83 7.83 -51.93 -0.41 0.43 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.03 0.46 7.97 -51.93 -0.41 0.04 16 35 H 0.08 1.31 7.48 -51.93 -0.39 0.92 16 36 H 0.06 0.61 6.66 -51.93 -0.35 0.26 16 37 H 0.06 0.53 7.42 -51.93 -0.39 0.15 16 38 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -30.62 296.25 -7.44 -38.06 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.06 Total: -1.82 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.23 Total: 1.33 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.68 Total: -46.93 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.62 -7.44 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.462 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds