Wall clock time and date at job start Mon Mar 30 2020 03:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46862 * 2 1 4 4 C 1.33556 * 119.89870 * 270.23833 * 3 2 1 5 5 O 1.21281 * 120.06949 * 359.68195 * 4 3 2 6 6 C 1.51492 * 119.88074 * 179.97438 * 4 3 2 7 7 C 1.53144 * 108.38091 * 289.77711 * 6 4 3 8 8 N 1.45581 * 110.69369 * 84.13970 * 7 6 4 9 9 C 1.46897 * 111.00434 * 163.86496 * 8 7 6 10 10 C 1.50699 * 109.47096 * 300.59643 * 9 8 7 11 11 H 1.07998 * 120.00075 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99935 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99631 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 119.99970 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47439 * 59.99784 * 14 12 10 16 16 H 1.48505 * 109.47140 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47321 * 299.99620 * 14 12 10 18 18 C 1.45564 * 116.01687 * 291.78795 * 8 7 6 19 19 C 1.47257 * 119.94901 * 89.99808 * 3 2 1 20 20 H 1.08998 * 109.62384 * 130.75280 * 19 3 2 21 21 C 1.53006 * 109.62201 * 10.38726 * 19 3 2 22 22 H 1.09010 * 109.46791 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47633 * 299.99824 * 1 2 3 24 24 H 1.08996 * 109.47209 * 60.00672 * 1 2 3 25 25 H 1.08996 * 109.47633 * 240.00175 * 2 1 3 26 26 H 1.08995 * 109.47403 * 119.99846 * 2 1 3 27 27 H 1.09000 * 109.68623 * 170.05134 * 6 4 3 28 28 H 1.09002 * 109.68174 * 49.49625 * 6 4 3 29 29 H 1.09001 * 109.22581 * 323.83141 * 7 6 4 30 30 H 1.08995 * 109.23496 * 204.46065 * 7 6 4 31 31 H 1.09007 * 109.46432 * 60.58870 * 9 8 7 32 32 H 1.08994 * 109.47143 * 180.58484 * 9 8 7 33 33 H 0.96998 * 119.99592 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.20016 * 308.09804 * 18 8 7 35 35 H 1.08994 * 109.16252 * 188.77470 * 18 8 7 36 36 H 1.09001 * 109.46998 * 300.36577 * 21 19 3 37 37 H 1.09000 * 109.47050 * 60.36869 * 21 19 3 38 38 H 1.09001 * 109.46801 * 180.36981 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2356 2.0105 -1.1578 5 8 2.0347 1.4378 -2.2078 6 6 2.7399 3.4390 -1.1573 7 6 1.6129 4.3489 -0.6600 8 7 1.5884 4.3891 0.7950 9 6 0.7899 5.5240 1.2769 10 6 1.3786 6.8097 0.7560 11 1 2.2582 6.7862 0.1298 12 6 0.7942 8.0161 1.0787 13 7 -0.2773 8.0447 1.8407 14 14 1.5243 9.6098 0.4335 15 1 1.5157 9.5928 -1.0514 16 1 0.7162 10.7570 0.9196 17 1 2.9210 9.7466 0.9189 18 6 1.1971 3.1556 1.4614 19 6 2.2632 2.0744 1.2759 20 1 3.2509 2.5350 1.2586 21 6 2.1843 1.0715 2.4289 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 3.0257 3.7278 -2.1688 28 1 3.6004 3.5243 -0.4937 29 1 0.6583 3.9699 -1.0249 30 1 1.7690 5.3567 -1.0446 31 1 -0.2356 5.4236 0.9213 32 1 0.7969 5.5364 2.3668 33 1 -0.6887 8.8934 2.0675 34 1 0.2544 2.8047 1.0414 35 1 1.0651 3.3502 2.5256 36 1 1.1958 0.6125 2.4441 37 1 2.9414 0.2995 2.2913 38 1 2.3595 1.5883 3.3725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:38 Heat of formation + Delta-G solvation = -52.058060 kcal Electronic energy + Delta-G solvation = -18315.368181 eV Core-core repulsion = 15577.889516 eV Total energy + Delta-G solvation = -2737.478665 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59599 -38.66223 -37.28937 -34.80267 -33.05115 -32.80598 -30.57625 -29.10846 -26.80555 -25.11172 -23.81419 -23.18058 -21.74776 -19.71715 -18.59470 -18.26021 -17.45420 -16.79918 -16.27955 -16.20527 -15.61111 -15.28625 -14.80432 -14.44182 -14.14535 -14.07255 -13.72248 -13.62797 -13.25026 -13.17292 -12.84146 -12.78404 -12.69055 -12.46943 -12.38191 -12.19359 -11.96401 -11.80623 -11.71286 -11.25376 -10.72614 -10.59670 -9.74621 -8.99017 -8.19232 -6.29022 1.44397 1.46589 1.54251 1.56959 2.02380 2.41742 3.07931 3.15630 3.47951 3.96741 3.98222 4.11127 4.13003 4.24369 4.29512 4.34824 4.45890 4.50134 4.69315 4.70370 4.76125 4.91443 4.94164 4.97713 5.00769 5.14982 5.19621 5.22667 5.31497 5.34834 5.60583 5.67006 6.05274 6.25794 6.35926 6.71537 6.87180 7.13956 7.40785 8.91631 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035144 B = 0.006337 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.535225 B = 4417.499963 C = 4784.103720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.601 5.601 4 C 0.511 3.489 5 O -0.595 6.595 6 C -0.127 4.127 7 C 0.090 3.910 8 N -0.560 5.560 9 C 0.217 3.783 10 C -0.526 4.526 11 H 0.070 0.930 12 C 0.003 3.997 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.270 1.270 16 H -0.286 1.286 17 H -0.265 1.265 18 C 0.055 3.945 19 C 0.142 3.858 20 H 0.097 0.903 21 C -0.150 4.150 22 H 0.088 0.912 23 H 0.057 0.943 24 H 0.023 0.977 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.113 0.887 29 H -0.003 1.003 30 H 0.085 0.915 31 H -0.046 1.046 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.012 0.988 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 -14.353 1.242 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.332 5.332 4 C 0.300 3.700 5 O -0.477 6.477 6 C -0.167 4.167 7 C -0.039 4.039 8 N -0.284 5.284 9 C 0.091 3.909 10 C -0.564 4.564 11 H 0.088 0.912 12 C -0.195 4.195 13 N -0.575 5.575 14 Si 0.792 3.208 15 H -0.195 1.195 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.074 4.074 19 C 0.039 3.961 20 H 0.115 0.885 21 C -0.207 4.207 22 H 0.107 0.893 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.015 0.985 30 H 0.104 0.896 31 H -0.029 1.029 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.016 -14.493 0.933 15.720 hybrid contribution -1.169 1.071 -0.561 1.682 sum 4.847 -13.422 0.372 14.275 Atomic orbital electron populations 1.22111 0.96077 1.02996 1.00827 1.21686 0.94412 0.81929 1.04198 1.48232 1.64196 1.14618 1.06181 1.20977 0.76649 0.89152 0.83207 1.90629 1.55214 1.69148 1.32684 1.22091 1.00102 0.89870 1.04668 1.21411 0.94684 1.00067 0.87704 1.59511 1.58172 1.04321 1.06443 1.19286 0.89080 0.88028 0.94515 1.21506 1.12573 0.91166 1.31159 0.91159 1.25888 0.95269 1.02985 0.95375 1.70078 1.21992 1.27285 1.38154 0.85468 0.78597 0.77989 0.78779 1.19463 1.21201 1.18971 1.22292 0.95847 0.89632 0.99619 1.21588 0.99043 0.92343 0.83099 0.88529 1.22066 1.03589 0.98665 0.96398 0.89276 0.92358 0.95725 0.91305 0.86485 0.87741 0.86854 0.98461 0.89649 1.02862 0.96814 0.92742 0.97029 0.89560 0.91143 0.89663 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.12 71.98 0.73 -2.93 16 2 C 0.10 2.20 5.45 86.38 0.47 2.67 16 3 N -0.60 -16.43 2.49 -796.82 -1.98 -18.41 16 4 C 0.51 17.24 6.82 88.10 0.60 17.84 16 5 O -0.59 -23.81 16.64 -3.03 -0.05 -23.86 16 6 C -0.13 -4.07 5.62 30.15 0.17 -3.90 16 7 C 0.09 3.54 5.15 86.60 0.45 3.99 16 8 N -0.56 -22.81 4.22 -907.65 -3.83 -26.64 16 9 C 0.22 11.14 4.79 85.56 0.41 11.55 16 10 C -0.53 -28.65 8.24 25.60 0.21 -28.44 16 11 H 0.07 3.68 6.77 -2.91 -0.02 3.66 16 12 C 0.00 0.17 5.46 84.66 0.46 0.63 16 13 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 14 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 18 C 0.06 1.81 4.86 86.54 0.42 2.23 16 19 C 0.14 3.49 2.89 44.84 0.13 3.62 16 20 H 0.10 2.38 7.03 -2.39 -0.02 2.36 16 21 C -0.15 -2.40 7.75 71.98 0.56 -1.84 16 22 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 23 H 0.06 1.30 7.40 -2.39 -0.02 1.28 16 24 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 1.71 7.40 -2.39 -0.02 1.69 16 26 H 0.12 1.75 5.69 -2.39 -0.01 1.74 16 27 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.11 3.25 7.07 -2.39 -0.02 3.23 16 29 H 0.00 -0.12 7.87 -2.39 -0.02 -0.14 16 30 H 0.09 3.64 6.01 -2.39 -0.01 3.63 16 31 H -0.05 -2.67 8.14 -2.38 -0.02 -2.69 16 32 H 0.01 0.75 7.83 -2.39 -0.02 0.73 16 33 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.01 0.42 7.97 -2.39 -0.02 0.40 16 35 H 0.09 2.75 7.48 -2.39 -0.02 2.73 16 36 H 0.07 1.07 6.66 -2.39 -0.02 1.05 16 37 H 0.08 1.04 7.42 -2.39 -0.02 1.02 16 38 H 0.09 1.27 8.12 -2.39 -0.02 1.25 16 Total: -1.00 -67.64 296.25 2.08 -65.56 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.03 Total: 7.71 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 4.61 Total: 5.42 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -5.53 Total: -100.07 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -67.64 2.08 -65.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.497 kcal (2) G-P(sol) polarization free energy of solvation -67.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds