Wall clock time and date at job start Mon Mar 30 2020 03:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47344 * 2 1 4 4 C 1.47260 * 119.94812 * 270.02387 * 3 2 1 5 5 C 1.53015 * 108.58536 * 109.30813 * 4 3 2 6 6 H 1.09003 * 109.19415 * 325.36858 * 5 4 3 7 7 C 1.52997 * 109.20477 * 206.08186 * 5 4 3 8 8 N 1.45558 * 110.85907 * 85.71752 * 5 4 3 9 9 C 1.46906 * 110.99433 * 59.47025 * 8 5 4 10 10 C 1.50706 * 109.46735 * 168.62595 * 9 8 5 11 11 H 1.07994 * 120.00017 * 355.06955 * 10 9 8 12 12 C 1.37877 * 119.99702 * 175.07442 * 10 9 8 13 13 N 1.31517 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00051 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47412 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.47317 * 300.00316 * 14 12 10 17 17 H 1.48509 * 109.46753 * 59.99952 * 14 12 10 18 18 C 1.45580 * 116.02100 * 291.55608 * 8 5 4 19 19 C 1.53146 * 110.68808 * 68.21650 * 18 8 5 20 20 C 1.33633 * 119.95027 * 89.99508 * 3 2 1 21 21 O 1.21282 * 120.04731 * 0.24380 * 20 3 2 22 22 H 1.09008 * 109.47184 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47433 * 300.00140 * 1 2 3 24 24 H 1.09001 * 109.47197 * 59.99961 * 1 2 3 25 25 H 1.09001 * 109.47433 * 239.99860 * 2 1 3 26 26 H 1.09001 * 109.47197 * 120.00039 * 2 1 3 27 27 H 1.08999 * 109.62192 * 229.03082 * 4 3 2 28 28 H 1.09001 * 109.61970 * 349.39931 * 4 3 2 29 29 H 1.09004 * 109.47097 * 298.63183 * 7 5 4 30 30 H 1.08998 * 109.47248 * 58.63015 * 7 5 4 31 31 H 1.08998 * 109.47573 * 178.63145 * 7 5 4 32 32 H 1.08993 * 109.47149 * 48.62665 * 9 8 5 33 33 H 1.08995 * 109.47227 * 288.62396 * 9 8 5 34 34 H 0.97002 * 119.99874 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.23676 * 188.53180 * 18 8 5 36 36 H 1.09001 * 109.23102 * 307.90685 * 18 8 5 37 37 H 1.08993 * 109.68402 * 35.57958 * 19 18 8 38 38 H 1.08999 * 109.68272 * 156.10231 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2629 2.0745 -1.2760 5 6 1.1920 3.1521 -1.4586 6 1 0.2515 2.7979 -1.0365 7 6 1.0013 3.4241 -2.9520 8 7 1.5804 4.3868 -0.7928 9 6 2.8488 4.8979 -1.3298 10 6 3.0782 6.3001 -0.8275 11 1 2.3184 6.7945 -0.2404 12 6 4.2581 6.9518 -1.1175 13 7 5.1835 6.3496 -1.8321 14 14 4.5423 8.6901 -0.4955 15 1 5.8784 9.1625 -0.9394 16 1 3.4929 9.5886 -1.0403 17 1 4.4818 8.7010 0.9883 18 6 1.6085 4.3464 0.6622 19 6 2.7400 3.4404 1.1565 20 6 2.2406 2.0102 1.1579 21 8 2.0426 1.4370 2.2082 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.2491 2.5382 -1.2574 28 1 2.2100 1.3595 -2.0970 29 1 1.9359 3.7903 -3.3770 30 1 0.7101 2.5020 -3.4550 31 1 0.2219 4.1739 -3.0882 32 1 2.8058 4.9045 -2.4188 33 1 3.6668 4.2563 -1.0023 34 1 6.0135 6.8082 -2.0364 35 1 1.7619 5.3547 1.0466 36 1 0.6560 3.9640 1.0291 37 1 3.5985 3.5289 0.4909 38 1 3.0275 3.7304 2.1671 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:15 Heat of formation + Delta-G solvation = -26.372788 kcal Electronic energy + Delta-G solvation = -18641.129887 eV Core-core repulsion = 15904.765019 eV Total energy + Delta-G solvation = -2736.364868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30985 -37.53099 -35.39857 -32.77732 -32.16282 -31.02922 -28.57200 -26.69395 -25.84195 -24.06701 -23.13419 -21.87230 -18.96020 -18.56975 -16.99780 -16.31808 -16.14256 -15.12633 -14.96870 -14.59869 -14.00030 -13.75799 -13.39415 -13.15667 -12.85413 -12.66560 -12.11948 -12.03620 -11.95208 -11.81492 -11.44565 -11.15312 -10.92967 -10.89944 -10.79219 -10.68586 -10.52392 -10.29219 -9.72334 -9.25617 -9.24646 -8.65447 -8.45115 -7.13084 -6.08441 -4.09442 3.01017 3.27150 3.30959 3.35571 3.38353 4.37792 4.73885 4.81005 5.15325 5.23052 5.26829 5.32148 5.43052 5.45465 5.53706 5.71295 5.79055 5.82111 5.87710 5.91228 5.98763 6.04606 6.18771 6.21419 6.40749 6.53334 6.66400 6.70331 6.78983 7.27526 7.30541 7.64867 7.76463 8.08562 8.14293 8.51547 8.53585 8.97926 9.55302 11.01830 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033531 B = 0.007345 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.855642 B = 3811.382250 C = 4197.812617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.610 5.610 4 C 0.070 3.930 5 C 0.080 3.920 6 H 0.070 0.930 7 C -0.142 4.142 8 N -0.552 5.552 9 C 0.186 3.814 10 C -0.510 4.510 11 H 0.063 0.937 12 C 0.058 3.942 13 N -0.898 5.898 14 Si 0.895 3.105 15 H -0.289 1.289 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.093 3.907 19 C -0.180 4.180 20 C 0.519 3.481 21 O -0.563 6.563 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.002 0.998 34 H 0.262 0.738 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 -9.360 -0.697 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.343 5.343 4 C -0.054 4.054 5 C -0.031 4.031 6 H 0.088 0.912 7 C -0.200 4.200 8 N -0.275 5.275 9 C 0.062 3.938 10 C -0.548 4.548 11 H 0.081 0.919 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.723 3.277 15 H -0.214 1.214 16 H -0.202 1.202 17 H -0.203 1.203 18 C -0.036 4.036 19 C -0.221 4.221 20 C 0.309 3.691 21 O -0.442 6.442 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.730 -9.329 -0.340 11.508 hybrid contribution 0.937 0.362 0.387 1.076 sum -5.793 -8.967 0.048 10.676 Atomic orbital electron populations 1.22128 0.96101 1.01706 1.02426 1.21393 0.94398 0.82942 1.02567 1.47987 1.65724 1.13789 1.06785 1.22850 1.01920 0.96063 0.84546 1.21688 0.96714 0.88838 0.95825 0.91167 1.21875 1.03262 1.00788 0.94079 1.60096 1.37177 1.25881 1.04300 1.19865 0.83339 0.94707 0.95854 1.21134 1.01329 0.98931 1.33435 0.91898 1.24954 0.95963 0.98154 0.95295 1.69927 1.07432 1.37677 1.38741 0.86599 0.77212 0.84629 0.79220 1.21423 1.20197 1.20253 1.21531 0.94476 0.99671 0.87948 1.22772 1.03094 0.91213 1.05069 1.20963 0.76290 0.89101 0.82794 1.90627 1.53637 1.68515 1.31408 0.92033 0.92358 0.92420 0.90957 0.90303 0.89398 0.90073 0.91326 0.93287 0.91770 0.94544 0.98038 0.92844 0.88671 0.93021 0.87749 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.15 0.38 -1.56 16 2 C 0.11 1.43 6.12 -4.05 -0.02 1.40 16 3 N -0.61 -9.61 2.48 -173.06 -0.43 -10.04 16 4 C 0.07 1.07 5.27 -3.62 -0.02 1.05 16 5 C 0.08 1.29 2.62 -68.43 -0.18 1.11 16 6 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 7 C -0.14 -2.10 8.86 37.16 0.33 -1.77 16 8 N -0.55 -10.81 4.34 -230.13 -1.00 -11.80 16 9 C 0.19 4.31 3.73 -4.97 -0.02 4.30 16 10 C -0.51 -13.27 8.37 -34.44 -0.29 -13.56 16 11 H 0.06 1.64 6.91 -52.49 -0.36 1.27 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -25.18 13.29 55.43 0.74 -24.45 16 14 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 18 C 0.09 1.75 5.34 -4.46 -0.02 1.73 16 19 C -0.18 -3.36 5.50 -27.42 -0.15 -3.51 16 20 C 0.52 9.62 6.82 -11.11 -0.08 9.54 16 21 O -0.56 -11.83 16.64 5.56 0.09 -11.73 16 22 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 25 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 26 H 0.08 1.11 7.40 -51.93 -0.38 0.73 16 27 H 0.09 1.54 5.12 -51.93 -0.27 1.28 16 28 H 0.08 1.02 7.50 -51.93 -0.39 0.63 16 29 H 0.07 1.13 6.14 -51.93 -0.32 0.81 16 30 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.90 5.75 -51.93 -0.30 0.60 16 33 H 0.00 0.05 4.55 -51.93 -0.24 -0.18 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.10 1.90 6.58 -51.93 -0.34 1.56 16 36 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 37 H 0.10 2.13 4.93 -51.93 -0.26 1.87 16 38 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 291.46 15.07 4.39 4.39 Total: -1.00 -29.15 291.46 -7.14 -36.29 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.74 Total: 1.33 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.17 Total: 0.19 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.69 Total: -46.29 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.15 -7.14 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.916 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds