Wall clock time and date at job start Mon Mar 30 2020 03:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47344 * 2 1 4 4 C 1.47260 * 119.94812 * 270.02387 * 3 2 1 5 5 C 1.53015 * 108.58536 * 109.30813 * 4 3 2 6 6 H 1.09003 * 109.19415 * 325.36858 * 5 4 3 7 7 C 1.52997 * 109.20477 * 206.08186 * 5 4 3 8 8 N 1.45558 * 110.85907 * 85.71752 * 5 4 3 9 9 C 1.46906 * 110.99433 * 59.47025 * 8 5 4 10 10 C 1.50706 * 109.46735 * 168.62595 * 9 8 5 11 11 H 1.07994 * 120.00017 * 355.06955 * 10 9 8 12 12 C 1.37877 * 119.99702 * 175.07442 * 10 9 8 13 13 N 1.31517 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00051 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47412 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.47317 * 300.00316 * 14 12 10 17 17 H 1.48509 * 109.46753 * 59.99952 * 14 12 10 18 18 C 1.45580 * 116.02100 * 291.55608 * 8 5 4 19 19 C 1.53146 * 110.68808 * 68.21650 * 18 8 5 20 20 C 1.33633 * 119.95027 * 89.99508 * 3 2 1 21 21 O 1.21282 * 120.04731 * 0.24380 * 20 3 2 22 22 H 1.09008 * 109.47184 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47433 * 300.00140 * 1 2 3 24 24 H 1.09001 * 109.47197 * 59.99961 * 1 2 3 25 25 H 1.09001 * 109.47433 * 239.99860 * 2 1 3 26 26 H 1.09001 * 109.47197 * 120.00039 * 2 1 3 27 27 H 1.08999 * 109.62192 * 229.03082 * 4 3 2 28 28 H 1.09001 * 109.61970 * 349.39931 * 4 3 2 29 29 H 1.09004 * 109.47097 * 298.63183 * 7 5 4 30 30 H 1.08998 * 109.47248 * 58.63015 * 7 5 4 31 31 H 1.08998 * 109.47573 * 178.63145 * 7 5 4 32 32 H 1.08993 * 109.47149 * 48.62665 * 9 8 5 33 33 H 1.08995 * 109.47227 * 288.62396 * 9 8 5 34 34 H 0.97002 * 119.99874 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.23676 * 188.53180 * 18 8 5 36 36 H 1.09001 * 109.23102 * 307.90685 * 18 8 5 37 37 H 1.08993 * 109.68402 * 35.57958 * 19 18 8 38 38 H 1.08999 * 109.68272 * 156.10231 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2629 2.0745 -1.2760 5 6 1.1920 3.1521 -1.4586 6 1 0.2515 2.7979 -1.0365 7 6 1.0013 3.4241 -2.9520 8 7 1.5804 4.3868 -0.7928 9 6 2.8488 4.8979 -1.3298 10 6 3.0782 6.3001 -0.8275 11 1 2.3184 6.7945 -0.2404 12 6 4.2581 6.9518 -1.1175 13 7 5.1835 6.3496 -1.8321 14 14 4.5423 8.6901 -0.4955 15 1 5.8784 9.1625 -0.9394 16 1 3.4929 9.5886 -1.0403 17 1 4.4818 8.7010 0.9883 18 6 1.6085 4.3464 0.6622 19 6 2.7400 3.4404 1.1565 20 6 2.2406 2.0102 1.1579 21 8 2.0426 1.4370 2.2082 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.2491 2.5382 -1.2574 28 1 2.2100 1.3595 -2.0970 29 1 1.9359 3.7903 -3.3770 30 1 0.7101 2.5020 -3.4550 31 1 0.2219 4.1739 -3.0882 32 1 2.8058 4.9045 -2.4188 33 1 3.6668 4.2563 -1.0023 34 1 6.0135 6.8082 -2.0364 35 1 1.7619 5.3547 1.0466 36 1 0.6560 3.9640 1.0291 37 1 3.5985 3.5289 0.4909 38 1 3.0275 3.7304 2.1671 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:14 Heat of formation + Delta-G solvation = -45.338310 kcal Electronic energy + Delta-G solvation = -18641.952293 eV Core-core repulsion = 15904.765019 eV Total energy + Delta-G solvation = -2737.187275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.73577 -39.05561 -36.75539 -34.70608 -33.61509 -32.26016 -30.13838 -28.39437 -27.12528 -25.61587 -24.66474 -23.20018 -20.49362 -19.92347 -18.66949 -18.02330 -17.51275 -16.73999 -16.50126 -16.20691 -15.66330 -14.95314 -14.73502 -14.51848 -14.21022 -13.99210 -13.90247 -13.39563 -13.26611 -13.07909 -12.84130 -12.76714 -12.59711 -12.37259 -12.30684 -12.08481 -11.99340 -11.89309 -11.34168 -11.17982 -10.77245 -10.49534 -9.98826 -8.71864 -8.13177 -6.20094 1.45629 1.45911 1.53438 1.53636 2.00096 2.44844 3.20150 3.23807 3.46217 3.96851 4.04545 4.10024 4.18148 4.29393 4.35868 4.37679 4.43560 4.52472 4.61817 4.71875 4.81024 4.87304 4.99741 5.02095 5.10761 5.19580 5.28822 5.39569 5.47809 5.49723 5.59058 5.74355 6.17674 6.24647 6.44946 6.83537 6.96563 7.09428 7.48608 8.95976 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033531 B = 0.007345 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.855642 B = 3811.382250 C = 4197.812617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.103 3.897 3 N -0.603 5.603 4 C 0.076 3.924 5 C 0.078 3.922 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.558 5.558 9 C 0.204 3.796 10 C -0.520 4.520 11 H 0.059 0.941 12 C 0.010 3.990 13 N -0.930 5.930 14 Si 0.954 3.046 15 H -0.287 1.287 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.098 3.902 19 C -0.173 4.173 20 C 0.517 3.483 21 O -0.591 6.591 22 H 0.087 0.913 23 H 0.032 0.968 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.023 0.977 33 H -0.014 1.014 34 H 0.262 0.738 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 -10.308 -1.409 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.018 4.018 3 N -0.334 5.334 4 C -0.048 4.048 5 C -0.032 4.032 6 H 0.100 0.900 7 C -0.193 4.193 8 N -0.281 5.281 9 C 0.079 3.921 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.189 4.189 13 N -0.570 5.570 14 Si 0.780 3.220 15 H -0.213 1.213 16 H -0.196 1.196 17 H -0.198 1.198 18 C -0.031 4.031 19 C -0.215 4.215 20 C 0.307 3.693 21 O -0.473 6.473 22 H 0.106 0.894 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.003 0.997 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.897 -10.293 -1.075 13.018 hybrid contribution 1.250 0.596 0.586 1.504 sum -6.647 -9.696 -0.489 11.766 Atomic orbital electron populations 1.22069 0.94764 1.03207 1.01578 1.21676 0.95453 0.81107 1.03582 1.48051 1.64463 1.14818 1.06021 1.22811 1.00045 0.96621 0.85279 1.21823 0.97195 0.87623 0.96521 0.90045 1.21828 1.01989 1.02511 0.92984 1.60004 1.35102 1.28357 1.04623 1.19494 0.84458 0.93350 0.94795 1.21489 1.01158 1.00337 1.32915 0.92303 1.25682 0.95904 1.01681 0.95591 1.70033 1.07831 1.39106 1.40059 0.85667 0.77052 0.80475 0.78804 1.21298 1.19649 1.19758 1.21430 0.95040 0.98898 0.87702 1.22648 1.02323 0.92062 1.04502 1.20819 0.76362 0.88841 0.83319 1.90612 1.55190 1.68994 1.32534 0.89437 0.94904 0.91437 0.87604 0.91649 0.91988 0.86280 0.93468 0.89449 0.92306 0.95939 0.99678 0.92935 0.90250 0.91761 0.89622 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.24 71.98 0.74 -2.47 16 2 C 0.10 2.40 6.12 86.38 0.53 2.93 16 3 N -0.60 -17.92 2.48 -820.47 -2.03 -19.95 16 4 C 0.08 2.16 5.27 86.24 0.45 2.62 16 5 C 0.08 2.37 2.62 45.17 0.12 2.49 16 6 H 0.08 2.36 7.94 -2.39 -0.02 2.34 16 7 C -0.14 -3.68 8.86 71.98 0.64 -3.05 16 8 N -0.56 -21.67 4.34 -882.00 -3.83 -25.50 16 9 C 0.20 9.59 3.73 85.56 0.32 9.91 16 10 C -0.52 -27.43 8.37 25.60 0.21 -27.21 16 11 H 0.06 3.09 6.91 -2.91 -0.02 3.07 16 12 C 0.01 0.53 5.46 84.65 0.46 0.99 16 13 N -0.93 -52.86 13.29 21.45 0.28 -52.57 16 14 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 15 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C 0.10 3.72 5.34 86.60 0.46 4.18 16 19 C -0.17 -6.59 5.50 30.15 0.17 -6.43 16 20 C 0.52 18.97 6.82 88.09 0.60 19.57 16 21 O -0.59 -24.78 16.64 -3.04 -0.05 -24.83 16 22 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 23 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 1.24 8.03 -2.39 -0.02 1.23 16 25 H 0.11 1.78 7.86 -2.39 -0.02 1.76 16 26 H 0.06 1.73 7.40 -2.39 -0.02 1.71 16 27 H 0.06 2.15 5.12 -2.39 -0.01 2.14 16 28 H 0.12 2.51 7.50 -2.39 -0.02 2.49 16 29 H 0.05 1.50 6.14 -2.38 -0.01 1.48 16 30 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.02 1.13 5.75 -2.39 -0.01 1.11 16 33 H -0.01 -0.71 4.55 -2.39 -0.01 -0.72 16 34 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.08 3.23 6.58 -2.39 -0.02 3.21 16 36 H 0.06 2.26 7.87 -2.39 -0.02 2.24 16 37 H 0.09 3.61 4.93 -2.39 -0.01 3.59 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -63.03 291.46 2.14 -60.88 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.04 Total: 13.49 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 4.70 Total: 3.53 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -5.58 Total: -98.03 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -63.03 2.14 -60.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.547 kcal (2) G-P(sol) polarization free energy of solvation -63.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds