Wall clock time and date at job start Mon Mar 30 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47089 * 2 1 4 4 C 1.47253 * 119.95051 * 270.02190 * 3 2 1 5 5 C 1.53064 * 108.56304 * 250.66784 * 4 3 2 6 6 H 1.08994 * 109.19994 * 34.62412 * 5 4 3 7 7 C 1.53001 * 109.19753 * 153.96070 * 5 4 3 8 8 N 1.45554 * 110.84875 * 274.26907 * 5 4 3 9 9 C 1.46901 * 110.99578 * 196.36868 * 8 5 4 10 10 C 1.50701 * 109.47317 * 295.45503 * 9 8 5 11 11 H 1.07999 * 119.99733 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00501 * 179.97438 * 10 9 8 13 13 N 1.31503 * 120.00415 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99529 * 0.02562 * 12 10 9 15 15 H 1.48490 * 109.47205 * 89.99834 * 14 12 10 16 16 H 1.48508 * 109.46878 * 209.99695 * 14 12 10 17 17 H 1.48497 * 109.47457 * 329.99297 * 14 12 10 18 18 C 1.45584 * 116.02028 * 68.45485 * 8 5 4 19 19 C 1.53146 * 110.68679 * 291.77648 * 18 8 5 20 20 C 1.33633 * 119.94330 * 90.00287 * 3 2 1 21 21 O 1.21279 * 120.05395 * 359.78016 * 20 3 2 22 22 H 1.09001 * 109.47031 * 299.99819 * 1 2 3 23 23 H 1.09002 * 109.47122 * 59.99486 * 1 2 3 24 24 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46722 * 240.00444 * 2 1 3 26 26 H 1.08997 * 109.47209 * 120.00030 * 2 1 3 27 27 H 1.09000 * 109.62413 * 10.39175 * 4 3 2 28 28 H 1.09002 * 109.62104 * 130.94382 * 4 3 2 29 29 H 1.09006 * 109.47083 * 60.00367 * 7 5 4 30 30 H 1.09000 * 109.46537 * 179.97438 * 7 5 4 31 31 H 1.08990 * 109.47284 * 300.00025 * 7 5 4 32 32 H 1.09000 * 109.47301 * 55.46357 * 9 8 5 33 33 H 1.09005 * 109.47131 * 175.45922 * 9 8 5 34 34 H 0.97003 * 120.00654 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.23759 * 171.46343 * 18 8 5 36 36 H 1.08998 * 109.22979 * 52.08550 * 18 8 5 37 37 H 1.08996 * 109.68033 * 203.86055 * 19 18 8 38 38 H 1.08997 * 109.68275 * 324.38325 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2630 2.0745 -1.2759 5 6 3.7736 2.2399 -1.4588 6 1 4.2827 1.3734 -1.0370 7 6 4.0923 2.3330 -2.9523 8 7 4.2472 3.4445 -0.7930 9 6 5.5838 3.8203 -1.2730 10 6 6.5736 2.7495 -0.8927 11 1 6.2428 1.8768 -0.3491 12 6 7.9013 2.8833 -1.2395 13 7 8.7650 1.9486 -0.9080 14 14 8.4733 4.3923 -2.1803 15 1 8.8743 5.4517 -1.2201 16 1 9.6341 4.0329 -3.0340 17 1 7.3664 4.8920 -3.0348 18 6 4.2003 3.4304 0.6620 19 6 2.7510 3.4365 1.1566 20 6 2.2408 2.0101 1.1580 21 8 2.0349 1.4396 2.2082 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.8573 1.4837 -2.0972 28 1 1.7870 3.0549 -1.2568 29 1 3.5758 3.1918 -3.3812 30 1 5.1674 2.4514 -3.0876 31 1 3.7609 1.4229 -3.4520 32 1 5.5635 3.9278 -2.3575 33 1 5.8799 4.7663 -0.8197 34 1 9.6992 2.0429 -1.1517 35 1 4.7146 4.3112 1.0464 36 1 4.7011 2.5344 1.0287 37 1 2.7098 3.8420 2.1675 38 1 2.1386 4.0455 0.4916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:17 Heat of formation + Delta-G solvation = -27.012745 kcal Electronic energy + Delta-G solvation = -18494.032393 eV Core-core repulsion = 15757.639774 eV Total energy + Delta-G solvation = -2736.392619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.14402 -37.52368 -35.48092 -32.80086 -32.17158 -31.39247 -29.02314 -26.98618 -25.62868 -23.87112 -22.30819 -22.12211 -19.21730 -18.55693 -17.15548 -16.56101 -16.30149 -15.27292 -14.71607 -14.67819 -13.93980 -13.83883 -13.55962 -13.30981 -12.57996 -12.52454 -12.36243 -12.15517 -11.98788 -11.73813 -11.53402 -11.29501 -11.00404 -10.90317 -10.79963 -10.57334 -10.43370 -10.28571 -9.90887 -9.55372 -9.30608 -8.64175 -8.43449 -7.24318 -6.14690 -4.15359 2.97545 3.23364 3.25846 3.31689 3.33161 4.34206 4.60129 4.78078 5.15551 5.18197 5.21935 5.31642 5.44422 5.47039 5.58337 5.63896 5.68701 5.73941 5.87801 5.97419 6.04345 6.09117 6.18734 6.27934 6.35757 6.61866 6.71195 6.76577 6.82859 6.89963 7.06334 7.50727 7.62786 7.95496 8.15970 8.40134 8.49224 8.88301 9.47355 10.98411 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034135 B = 0.007060 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.079931 B = 3964.829425 C = 4127.359783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.610 5.610 4 C 0.114 3.886 5 C 0.086 3.914 6 H 0.049 0.951 7 C -0.146 4.146 8 N -0.554 5.554 9 C 0.157 3.843 10 C -0.550 4.550 11 H 0.071 0.929 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.263 1.263 18 C 0.085 3.915 19 C -0.138 4.138 20 C 0.518 3.482 21 O -0.560 6.560 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.093 0.907 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 1.091 -2.962 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.342 5.342 4 C -0.009 4.009 5 C -0.024 4.024 6 H 0.067 0.933 7 C -0.204 4.204 8 N -0.279 5.279 9 C 0.031 3.969 10 C -0.589 4.589 11 H 0.089 0.911 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.187 1.187 18 C -0.043 4.043 19 C -0.178 4.178 20 C 0.307 3.693 21 O -0.439 6.439 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.963 1.052 -2.552 14.234 hybrid contribution 1.121 0.032 -0.265 1.152 sum -12.843 1.085 -2.818 13.193 Atomic orbital electron populations 1.22110 0.96156 1.01836 1.02086 1.21412 0.94048 0.82956 1.03098 1.48011 1.65356 1.13981 1.06857 1.22128 0.96884 0.97507 0.84337 1.21416 0.92604 0.93050 0.95354 0.93281 1.21947 1.04218 1.00293 0.93894 1.59961 1.28260 1.33815 1.05867 1.20277 0.84234 0.95935 0.96447 1.21666 0.92803 1.06823 1.37614 0.91115 1.24970 0.96713 0.96046 0.95281 1.69926 1.03254 1.33804 1.46555 0.86831 0.78710 0.83538 0.80537 1.20180 1.21332 1.18735 1.21365 0.92257 1.02216 0.88507 1.22175 0.99125 0.92885 1.03627 1.20816 0.76154 0.89405 0.82952 1.90651 1.53142 1.68676 1.31414 0.92416 0.92706 0.91895 0.90683 0.90126 0.89826 0.90071 0.92809 0.89823 0.93413 0.94254 0.95886 0.92650 0.90170 0.94226 0.88806 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.11 1.43 6.06 -4.04 -0.02 1.41 16 3 N -0.61 -9.28 2.48 -173.02 -0.43 -9.71 16 4 C 0.11 1.57 5.37 -3.60 -0.02 1.55 16 5 C 0.09 1.49 1.97 -68.41 -0.13 1.35 16 6 H 0.05 1.03 7.18 -51.93 -0.37 0.66 16 7 C -0.15 -2.35 8.19 37.16 0.30 -2.05 16 8 N -0.55 -10.51 4.24 -230.10 -0.98 -11.49 16 9 C 0.16 3.49 3.55 -4.97 -0.02 3.47 16 10 C -0.55 -14.66 8.00 -34.44 -0.28 -14.94 16 11 H 0.07 2.12 6.64 -52.49 -0.35 1.77 16 12 C 0.07 2.02 5.47 -17.83 -0.10 1.92 16 13 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 14 Si 0.88 20.58 27.47 -169.99 -4.67 15.92 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 18 C 0.09 1.59 4.82 -4.46 -0.02 1.57 16 19 C -0.14 -2.15 5.62 -27.42 -0.15 -2.31 16 20 C 0.52 9.10 6.82 -11.10 -0.08 9.02 16 21 O -0.56 -11.57 16.65 5.56 0.09 -11.47 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.87 8.03 -51.92 -0.42 0.45 16 26 H 0.08 1.22 7.40 -51.93 -0.38 0.83 16 27 H 0.08 0.94 7.65 -51.93 -0.40 0.55 16 28 H 0.08 1.05 7.02 -51.93 -0.36 0.68 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.62 5.70 -51.93 -0.30 1.33 16 31 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 32 H 0.04 0.87 4.88 -51.93 -0.25 0.62 16 33 H 0.02 0.52 7.36 -51.93 -0.38 0.14 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.08 1.46 7.82 -51.93 -0.41 1.06 16 36 H 0.04 0.87 7.08 -51.93 -0.37 0.51 16 37 H 0.09 1.37 8.13 -51.93 -0.42 0.94 16 38 H 0.09 1.29 7.07 -51.93 -0.37 0.93 16 LS Contribution 292.60 15.07 4.41 4.41 Total: -1.00 -31.02 292.60 -6.99 -38.01 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.06 Total: 0.85 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.14 Total: -0.43 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.63 Total: -47.28 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.02 -6.99 -38.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.994 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds