Wall clock time and date at job start Mon Mar 30 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47089 * 2 1 4 4 C 1.47253 * 119.95051 * 270.02190 * 3 2 1 5 5 C 1.53064 * 108.56304 * 250.66784 * 4 3 2 6 6 H 1.08994 * 109.19994 * 34.62412 * 5 4 3 7 7 C 1.53001 * 109.19753 * 153.96070 * 5 4 3 8 8 N 1.45554 * 110.84875 * 274.26907 * 5 4 3 9 9 C 1.46901 * 110.99578 * 196.36868 * 8 5 4 10 10 C 1.50701 * 109.47317 * 295.45503 * 9 8 5 11 11 H 1.07999 * 119.99733 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00501 * 179.97438 * 10 9 8 13 13 N 1.31503 * 120.00415 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99529 * 0.02562 * 12 10 9 15 15 H 1.48490 * 109.47205 * 89.99834 * 14 12 10 16 16 H 1.48508 * 109.46878 * 209.99695 * 14 12 10 17 17 H 1.48497 * 109.47457 * 329.99297 * 14 12 10 18 18 C 1.45584 * 116.02028 * 68.45485 * 8 5 4 19 19 C 1.53146 * 110.68679 * 291.77648 * 18 8 5 20 20 C 1.33633 * 119.94330 * 90.00287 * 3 2 1 21 21 O 1.21279 * 120.05395 * 359.78016 * 20 3 2 22 22 H 1.09001 * 109.47031 * 299.99819 * 1 2 3 23 23 H 1.09002 * 109.47122 * 59.99486 * 1 2 3 24 24 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46722 * 240.00444 * 2 1 3 26 26 H 1.08997 * 109.47209 * 120.00030 * 2 1 3 27 27 H 1.09000 * 109.62413 * 10.39175 * 4 3 2 28 28 H 1.09002 * 109.62104 * 130.94382 * 4 3 2 29 29 H 1.09006 * 109.47083 * 60.00367 * 7 5 4 30 30 H 1.09000 * 109.46537 * 179.97438 * 7 5 4 31 31 H 1.08990 * 109.47284 * 300.00025 * 7 5 4 32 32 H 1.09000 * 109.47301 * 55.46357 * 9 8 5 33 33 H 1.09005 * 109.47131 * 175.45922 * 9 8 5 34 34 H 0.97003 * 120.00654 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.23759 * 171.46343 * 18 8 5 36 36 H 1.08998 * 109.22979 * 52.08550 * 18 8 5 37 37 H 1.08996 * 109.68033 * 203.86055 * 19 18 8 38 38 H 1.08997 * 109.68275 * 324.38325 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2630 2.0745 -1.2759 5 6 3.7736 2.2399 -1.4588 6 1 4.2827 1.3734 -1.0370 7 6 4.0923 2.3330 -2.9523 8 7 4.2472 3.4445 -0.7930 9 6 5.5838 3.8203 -1.2730 10 6 6.5736 2.7495 -0.8927 11 1 6.2428 1.8768 -0.3491 12 6 7.9013 2.8833 -1.2395 13 7 8.7650 1.9486 -0.9080 14 14 8.4733 4.3923 -2.1803 15 1 8.8743 5.4517 -1.2201 16 1 9.6341 4.0329 -3.0340 17 1 7.3664 4.8920 -3.0348 18 6 4.2003 3.4304 0.6620 19 6 2.7510 3.4365 1.1566 20 6 2.2408 2.0101 1.1580 21 8 2.0349 1.4396 2.2082 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.8573 1.4837 -2.0972 28 1 1.7870 3.0549 -1.2568 29 1 3.5758 3.1918 -3.3812 30 1 5.1674 2.4514 -3.0876 31 1 3.7609 1.4229 -3.4520 32 1 5.5635 3.9278 -2.3575 33 1 5.8799 4.7663 -0.8197 34 1 9.6992 2.0429 -1.1517 35 1 4.7146 4.3112 1.0464 36 1 4.7011 2.5344 1.0287 37 1 2.7098 3.8420 2.1675 38 1 2.1386 4.0455 0.4916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:17 Heat of formation + Delta-G solvation = -49.233663 kcal Electronic energy + Delta-G solvation = -18494.995964 eV Core-core repulsion = 15757.639774 eV Total energy + Delta-G solvation = -2737.356190 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50214 -39.05527 -36.81087 -34.74910 -33.62218 -32.75262 -30.46566 -28.60529 -27.02244 -25.16851 -24.07687 -23.36931 -20.83967 -19.86989 -18.99045 -18.07981 -17.59203 -16.77273 -16.52776 -16.10382 -15.54210 -15.07530 -14.87521 -14.68164 -14.47346 -13.90156 -13.72781 -13.38776 -13.16993 -13.12134 -12.92220 -12.75248 -12.60546 -12.32688 -12.20667 -11.99255 -11.93936 -11.84721 -11.66211 -11.48240 -10.80027 -10.71099 -9.71592 -8.94870 -8.29846 -6.35461 1.38840 1.39393 1.51237 1.58747 2.07037 2.35422 3.06412 3.10651 3.50511 4.01706 4.07288 4.15452 4.22347 4.35935 4.37374 4.41241 4.46136 4.54739 4.66016 4.84724 4.87195 4.90175 4.95347 5.00602 5.06654 5.11351 5.22376 5.27278 5.34335 5.47621 5.54304 5.61627 6.10392 6.31991 6.36037 6.60248 6.71924 7.14740 7.31722 8.87365 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034135 B = 0.007060 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.079931 B = 3964.829425 C = 4127.359783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.122 3.878 5 C 0.082 3.918 6 H -0.001 1.001 7 C -0.141 4.141 8 N -0.539 5.539 9 C 0.162 3.838 10 C -0.543 4.543 11 H 0.017 0.983 12 C 0.007 3.993 13 N -0.954 5.954 14 Si 0.950 3.050 15 H -0.270 1.270 16 H -0.289 1.289 17 H -0.233 1.233 18 C 0.090 3.910 19 C -0.123 4.123 20 C 0.506 3.494 21 O -0.601 6.601 22 H 0.037 0.963 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.083 0.917 36 H -0.010 1.010 37 H 0.105 0.895 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.993 3.118 -5.281 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.000 4.000 5 C -0.027 4.027 6 H 0.017 0.983 7 C -0.198 4.198 8 N -0.263 5.263 9 C 0.036 3.964 10 C -0.582 4.582 11 H 0.036 0.964 12 C -0.190 4.190 13 N -0.594 5.594 14 Si 0.773 3.227 15 H -0.195 1.195 16 H -0.215 1.215 17 H -0.156 1.156 18 C -0.039 4.039 19 C -0.163 4.163 20 C 0.295 3.705 21 O -0.483 6.483 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.139 0.861 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.008 0.992 37 H 0.123 0.877 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.260 3.079 -4.901 17.260 hybrid contribution 1.824 -0.736 0.499 2.029 sum -14.436 2.344 -4.402 15.273 Atomic orbital electron populations 1.22010 0.93756 1.03171 1.02033 1.21601 0.95961 0.81925 1.02734 1.48162 1.64153 1.14642 1.06860 1.22222 0.93834 0.99378 0.84549 1.21566 0.94937 0.90277 0.95943 0.98252 1.21890 1.02092 1.02904 0.92945 1.60097 1.25907 1.34462 1.05810 1.20184 0.84674 0.94306 0.97286 1.21871 0.93995 1.06224 1.36072 0.96432 1.25985 0.96805 0.99648 0.96572 1.70108 1.03723 1.36690 1.48909 0.85663 0.78781 0.78940 0.79283 1.19516 1.21508 1.15558 1.21332 0.94221 0.99962 0.88429 1.22084 0.96872 0.92397 1.04951 1.21213 0.75957 0.90179 0.83116 1.90627 1.55090 1.69641 1.32945 0.94381 0.90659 0.89955 0.88650 0.92984 0.86140 0.87781 0.89976 0.93545 0.90916 0.92788 0.95337 0.92694 0.89813 0.99190 0.87672 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 10.24 71.98 0.74 -2.25 16 2 C 0.10 2.56 6.06 86.38 0.52 3.09 16 3 N -0.61 -17.72 2.48 -820.36 -2.03 -19.75 16 4 C 0.12 2.94 5.37 86.26 0.46 3.40 16 5 C 0.08 2.77 1.97 45.19 0.09 2.86 16 6 H 0.00 -0.03 7.18 -2.39 -0.02 -0.04 16 7 C -0.14 -4.17 8.19 71.98 0.59 -3.58 16 8 N -0.54 -19.84 4.24 -881.91 -3.74 -23.58 16 9 C 0.16 7.07 3.55 85.56 0.30 7.37 16 10 C -0.54 -29.96 8.00 25.60 0.20 -29.76 16 11 H 0.02 1.13 6.64 -2.91 -0.02 1.11 16 12 C 0.01 0.41 5.47 84.66 0.46 0.88 16 13 N -0.95 -59.56 13.96 21.44 0.30 -59.26 16 14 Si 0.95 42.20 27.47 68.60 1.88 44.09 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.23 -9.14 6.54 99.48 0.65 -8.49 16 18 C 0.09 3.37 4.82 86.60 0.42 3.78 16 19 C -0.12 -3.68 5.62 30.15 0.17 -3.51 16 20 C 0.51 17.69 6.82 88.09 0.60 18.29 16 21 O -0.60 -25.49 16.65 -3.03 -0.05 -25.54 16 22 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.10 2.03 8.03 -2.38 -0.02 2.01 16 26 H 0.05 1.63 7.40 -2.39 -0.02 1.61 16 27 H 0.12 2.09 7.65 -2.39 -0.02 2.08 16 28 H 0.10 2.14 7.02 -2.39 -0.02 2.13 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.73 5.70 -2.39 -0.01 1.72 16 31 H 0.07 1.78 8.11 -2.39 -0.02 1.76 16 32 H 0.05 2.24 4.88 -2.39 -0.01 2.23 16 33 H 0.03 1.23 7.36 -2.38 -0.02 1.21 16 34 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.08 3.05 7.82 -2.39 -0.02 3.03 16 36 H -0.01 -0.49 7.08 -2.39 -0.02 -0.51 16 37 H 0.10 2.93 8.13 -2.39 -0.02 2.91 16 38 H 0.12 2.98 7.07 -2.39 -0.02 2.96 16 Total: -1.00 -72.80 292.60 1.90 -70.90 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.97 Total: 12.59 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 4.56 Total: 0.56 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -5.47 Total: -102.59 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.09 kcal Total: -72.80 1.90 -70.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.664 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds