Wall clock time and date at job start Mon Mar 30 2020 03:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46722 * 2 1 4 4 C 1.46012 * 118.53660 * 89.99934 * 3 2 1 5 5 C 1.52986 * 110.04225 * 198.18043 * 4 3 2 6 6 N 1.47189 * 108.73217 * 309.70868 * 5 4 3 7 7 C 1.46898 * 110.99800 * 305.63425 * 6 5 4 8 8 H 1.09002 * 109.47772 * 78.42621 * 7 6 5 9 9 C 1.53004 * 109.47005 * 318.42839 * 7 6 5 10 10 C 1.50697 * 109.47206 * 198.43066 * 7 6 5 11 11 H 1.08003 * 119.99831 * 5.83950 * 10 7 6 12 12 C 1.37883 * 120.00166 * 185.56375 * 10 7 6 13 13 N 1.31511 * 119.99906 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99783 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.47184 * 60.00078 * 14 12 10 16 16 H 1.48505 * 109.46641 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47058 * 299.99639 * 14 12 10 18 18 C 1.46901 * 110.17373 * 68.99515 * 6 5 4 19 19 H 1.08997 * 109.38876 * 69.85928 * 18 6 5 20 20 C 1.53008 * 109.38675 * 189.54886 * 18 6 5 21 21 C 1.33711 * 118.53649 * 270.01815 * 3 2 1 22 22 O 1.21280 * 118.62595 * 358.29258 * 21 3 2 23 23 H 1.09005 * 109.46911 * 60.00448 * 1 2 3 24 24 H 1.09009 * 109.46804 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47670 * 299.99800 * 1 2 3 26 26 H 1.08993 * 109.47255 * 239.99885 * 2 1 3 27 27 H 1.09005 * 109.46911 * 119.99552 * 2 1 3 28 28 H 1.08999 * 109.37538 * 78.00544 * 4 3 2 29 29 H 1.09000 * 109.37438 * 318.35138 * 4 3 2 30 30 H 1.08998 * 109.59641 * 189.93460 * 5 4 3 31 31 H 1.09008 * 109.59206 * 69.47743 * 5 4 3 32 32 H 1.09003 * 109.47461 * 184.46965 * 9 7 6 33 33 H 1.08995 * 109.47385 * 304.47318 * 9 7 6 34 34 H 1.09001 * 109.46791 * 64.47048 * 9 7 6 35 35 H 0.96997 * 119.99789 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46739 * 65.31729 * 20 18 6 37 37 H 1.08994 * 109.46991 * 185.31439 * 20 18 6 38 38 H 1.08995 * 109.46754 * 305.31779 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2507 2.0389 1.2827 5 6 2.3112 3.5555 1.0910 6 7 3.2503 3.8567 -0.0016 7 6 4.5616 3.2431 0.2473 8 1 4.5188 2.1820 0.0017 9 6 4.9314 3.4107 1.7225 10 6 5.6019 3.9157 -0.6108 11 1 5.3372 4.7789 -1.2035 12 6 6.8931 3.4326 -0.6350 13 7 7.2169 2.3851 0.0913 14 14 8.1827 4.2668 -1.6982 15 1 8.3367 5.6809 -1.2715 16 1 9.4805 3.5607 -1.5476 17 1 7.7564 4.2223 -3.1199 18 6 2.6945 3.4086 -1.2854 19 1 1.8509 4.0435 -1.5559 20 6 3.7711 3.5097 -2.3679 21 6 2.2308 1.9836 -1.1747 22 8 2.0414 1.3535 -2.1935 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.1940 1.6895 1.7025 29 1 1.4390 1.7931 1.9674 30 1 2.6573 4.0267 2.0109 31 1 1.3204 3.9314 0.8354 32 1 5.9375 3.0265 1.8908 33 1 4.8967 4.4672 1.9880 34 1 4.2233 2.8575 2.3395 35 1 8.1253 2.0454 0.0745 36 1 4.5760 2.8087 -2.1464 37 1 3.3354 3.2680 -3.3373 38 1 4.1689 4.5242 -2.3910 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261052374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:54 Heat of formation + Delta-G solvation = -32.276833 kcal Electronic energy + Delta-G solvation = -19032.358739 eV Core-core repulsion = 16295.737853 eV Total energy + Delta-G solvation = -2736.620887 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.99330 -38.76464 -36.98818 -34.85515 -32.93088 -32.04743 -30.38376 -28.56416 -27.08381 -25.40327 -24.14314 -23.26842 -21.61357 -19.43418 -18.38087 -17.86775 -17.51955 -16.59602 -16.39531 -16.12181 -15.64380 -15.38104 -14.82704 -14.38342 -14.14651 -13.77621 -13.41694 -13.28495 -12.98275 -12.92059 -12.79149 -12.64600 -12.47602 -12.41623 -12.20995 -12.07308 -11.97040 -11.88312 -11.36941 -11.27848 -10.71966 -10.39837 -9.68378 -8.93436 -8.05564 -6.07542 1.44530 1.45524 1.51580 1.60656 2.00871 2.46429 3.24655 3.25751 3.56006 4.04185 4.08376 4.11190 4.22145 4.33556 4.44200 4.49134 4.52984 4.68251 4.80663 4.88262 4.96135 4.97786 5.02742 5.08397 5.12029 5.15675 5.23931 5.49143 5.51013 5.64253 5.77669 5.83657 6.24713 6.32260 6.43034 6.67601 6.97842 7.15398 7.53895 9.01197 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031174 B = 0.008615 C = 0.008044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.981128 B = 3249.321070 C = 3479.951856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.073 3.927 5 C 0.033 3.967 6 N -0.524 5.524 7 C 0.217 3.783 8 H -0.026 1.026 9 C -0.130 4.130 10 C -0.495 4.495 11 H 0.067 0.933 12 C 0.008 3.992 13 N -0.925 5.925 14 Si 0.944 3.056 15 H -0.269 1.269 16 H -0.292 1.292 17 H -0.276 1.276 18 C 0.080 3.920 19 H 0.119 0.881 20 C -0.114 4.114 21 C 0.487 3.513 22 O -0.595 6.595 23 H 0.036 0.964 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.256 0.744 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -0.282 4.672 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 N -0.334 5.334 4 C -0.051 4.051 5 C -0.095 4.095 6 N -0.248 5.248 7 C 0.111 3.889 8 H -0.008 1.008 9 C -0.188 4.188 10 C -0.534 4.534 11 H 0.085 0.915 12 C -0.190 4.190 13 N -0.566 5.566 14 Si 0.771 3.229 15 H -0.194 1.194 16 H -0.218 1.218 17 H -0.201 1.201 18 C -0.032 4.032 19 H 0.136 0.864 20 C -0.171 4.171 21 C 0.275 3.725 22 O -0.476 6.476 23 H 0.055 0.945 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.647 -0.178 4.191 12.380 hybrid contribution 1.107 -0.843 -0.603 1.517 sum -10.540 -1.021 3.588 11.181 Atomic orbital electron populations 1.21975 0.93751 1.03191 1.01822 1.21576 0.96000 0.82241 1.02696 1.47613 1.64674 1.14844 1.06300 1.22451 1.02624 0.95440 0.84539 1.22720 0.97525 0.92182 0.97050 1.62793 1.03547 1.57935 1.00512 1.19087 0.84899 0.91053 0.93884 1.00816 1.21881 1.01125 0.99581 0.96233 1.21533 0.93706 1.13193 1.24983 0.91456 1.25557 1.00270 0.95893 0.97281 1.70024 1.19415 1.25175 1.41989 0.85817 0.78539 0.78968 0.79623 1.19371 1.21772 1.20106 1.21795 0.98973 0.89046 0.93345 0.86394 1.21842 0.96953 1.03228 0.95109 1.21708 0.76058 0.91592 0.83119 1.90577 1.54503 1.66486 1.36025 0.94517 0.89730 0.90895 0.92730 0.88844 0.92249 0.87183 0.87236 0.88777 0.93479 0.93899 0.93347 0.93457 0.93431 0.93627 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 10.23 71.98 0.74 -2.61 16 2 C 0.10 2.81 6.01 86.38 0.52 3.33 16 3 N -0.60 -20.37 2.67 -825.24 -2.21 -22.57 16 4 C 0.07 2.05 5.44 86.47 0.47 2.53 16 5 C 0.03 0.96 5.42 86.24 0.47 1.43 16 6 N -0.52 -20.19 4.83 -854.68 -4.13 -24.32 16 7 C 0.22 10.14 0.86 44.17 0.04 10.18 16 8 H -0.03 -1.40 6.45 -2.39 -0.02 -1.41 16 9 C -0.13 -5.63 7.78 71.98 0.56 -5.07 16 10 C -0.50 -25.80 5.52 25.60 0.14 -25.66 16 11 H 0.07 3.48 5.80 -2.91 -0.02 3.46 16 12 C 0.01 0.41 5.31 84.66 0.45 0.86 16 13 N -0.93 -52.86 11.73 21.45 0.25 -52.60 16 14 Si 0.94 43.61 29.54 68.60 2.03 45.63 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 C 0.08 3.13 3.01 44.03 0.13 3.26 16 19 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 20 C -0.11 -4.92 7.27 71.98 0.52 -4.40 16 21 C 0.49 19.79 6.27 87.69 0.55 20.34 16 22 O -0.60 -27.69 15.64 -3.03 -0.05 -27.74 16 23 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.88 7.21 -2.39 -0.02 1.87 16 27 H 0.09 2.26 8.03 -2.38 -0.02 2.24 16 28 H 0.06 1.94 5.43 -2.39 -0.01 1.93 16 29 H 0.11 2.19 8.12 -2.39 -0.02 2.17 16 30 H 0.11 2.86 6.71 -2.39 -0.02 2.85 16 31 H 0.09 2.27 8.08 -2.38 -0.02 2.25 16 32 H 0.05 2.35 6.44 -2.39 -0.02 2.34 16 33 H 0.04 1.77 8.12 -2.39 -0.02 1.75 16 34 H 0.05 1.74 4.89 -2.39 -0.01 1.73 16 35 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.05 2.43 5.90 -2.38 -0.01 2.42 16 37 H 0.04 1.85 7.97 -2.39 -0.02 1.83 16 38 H 0.08 3.20 6.23 -2.39 -0.01 3.19 16 Total: -1.00 -65.06 285.09 1.52 -63.54 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.04 Total: 13.88 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 4.59 Total: 4.19 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -6.08 Total: -99.49 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -65.06 1.52 -63.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.261 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds