Wall clock time and date at job start Mon Mar 30 2020 04:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 120.00256 * 2 1 4 4 N 1.34783 * 120.00081 * 179.97438 * 2 1 3 5 5 C 1.46925 * 120.62680 * 359.97438 * 4 2 1 6 6 C 1.53186 * 108.77350 * 233.62653 * 5 4 2 7 7 C 1.53038 * 109.31652 * 305.36693 * 6 5 4 8 8 C 1.53042 * 109.53674 * 61.36799 * 7 6 5 9 9 H 1.09006 * 109.52682 * 58.60001 * 8 7 6 10 10 C 1.52994 * 109.50076 * 178.68161 * 8 7 6 11 11 H 1.09009 * 109.47154 * 59.83655 * 10 8 7 12 12 N 1.46899 * 109.47404 * 299.84121 * 10 8 7 13 13 C 1.52996 * 109.47347 * 179.83498 * 10 8 7 14 14 C 1.50702 * 109.47159 * 185.00014 * 13 10 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.46924 * 120.63164 * 180.02562 * 4 2 1 23 23 H 1.08999 * 109.47339 * 239.99654 * 1 2 3 24 24 H 1.08998 * 109.47128 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46437 * 120.00096 * 1 2 3 26 26 H 1.08993 * 109.58820 * 353.41982 * 5 4 2 27 27 H 1.09009 * 109.58154 * 113.84629 * 5 4 2 28 28 H 1.08998 * 109.50062 * 65.32242 * 6 5 4 29 29 H 1.09005 * 109.49796 * 185.41533 * 6 5 4 30 30 H 1.09000 * 109.46404 * 301.34938 * 7 6 5 31 31 H 1.09000 * 109.46537 * 181.38494 * 7 6 5 32 32 H 1.00898 * 111.00374 * 176.04529 * 12 10 8 33 33 H 1.00901 * 110.99243 * 299.99485 * 12 10 8 34 34 H 1.09004 * 109.47066 * 65.00217 * 13 10 8 35 35 H 1.08994 * 109.47405 * 305.00047 * 13 10 8 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.58287 * 6.58253 * 22 4 2 38 38 H 1.08998 * 109.58951 * 246.16047 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4603 -2.4476 0.0017 6 6 1.9685 -3.2983 1.1698 7 6 3.4898 -3.4334 1.0734 8 6 4.1337 -2.0483 1.1687 9 1 3.8502 -1.5788 2.1107 10 6 5.6560 -2.1873 1.1053 11 1 5.9390 -2.6579 0.1636 12 7 6.1192 -3.0168 2.2257 13 6 6.2989 -0.8019 1.1965 14 6 7.7892 -0.9265 1.0110 15 1 8.2335 -1.8968 0.8442 16 6 8.5850 0.1989 1.0479 17 7 8.0441 1.3803 1.2505 18 14 10.4314 0.0453 0.8103 19 1 10.7565 0.1662 -0.6337 20 1 11.1190 1.1241 1.5644 21 1 10.8868 -1.2764 1.3111 22 6 3.6501 -1.1834 0.0011 23 1 -0.3634 -0.5139 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3632 -0.5139 -0.8901 26 1 0.3921 -2.2656 0.1196 27 1 1.6426 -2.9703 -0.9374 28 1 1.7049 -2.8175 2.1118 29 1 1.5119 -4.2872 1.1254 30 1 3.7541 -3.8919 0.1205 31 1 3.8514 -4.0588 1.8897 32 1 7.1138 -3.1771 2.1700 33 1 5.8688 -2.6016 3.1106 34 1 6.0895 -0.3679 2.1742 35 1 5.8884 -0.1589 0.4180 36 1 8.6040 2.1720 1.2768 37 1 4.0266 -0.1673 0.1187 38 1 4.0113 -1.6027 -0.9380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261059732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:49 Heat of formation + Delta-G solvation = -59.105894 kcal Electronic energy + Delta-G solvation = -17940.235171 eV Core-core repulsion = 15202.450889 eV Total energy + Delta-G solvation = -2737.784282 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.97850 -37.64331 -35.41313 -32.77456 -31.94629 -30.97321 -29.14171 -27.88300 -25.07615 -24.07726 -22.72860 -20.69396 -19.39817 -18.77257 -16.97388 -16.38754 -15.80266 -15.32317 -14.64040 -14.59343 -14.23861 -13.80859 -13.41667 -13.14711 -13.02597 -12.69953 -12.44439 -12.27846 -12.09118 -12.01592 -11.44159 -11.14647 -10.91819 -10.88163 -10.60531 -10.38759 -10.15718 -10.01770 -9.66891 -9.53119 -9.03020 -8.41022 -8.39287 -7.65795 -6.01412 -4.05988 2.81773 3.20582 3.30252 3.37039 3.38985 4.43095 4.66947 4.83112 5.02962 5.13654 5.18623 5.25831 5.32252 5.35597 5.43433 5.53349 5.71099 5.74585 5.86982 5.98698 6.04380 6.10881 6.30571 6.32119 6.49022 6.68811 6.70853 6.89020 6.92146 7.53737 7.62245 7.65779 7.92230 8.12610 8.27880 8.37954 8.41288 9.01431 9.58776 11.09087 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029203 B = 0.006295 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.581272 B = 4446.772847 C = 5216.007235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.505 3.495 3 O -0.541 6.541 4 N -0.612 5.612 5 C 0.107 3.893 6 C -0.137 4.137 7 C -0.106 4.106 8 C -0.088 4.088 9 H 0.064 0.936 10 C 0.099 3.901 11 H 0.066 0.934 12 N -0.841 5.841 13 C -0.010 4.010 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.114 3.886 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.343 0.657 33 H 0.327 0.673 34 H 0.014 0.986 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.102 0.898 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.954 -9.274 -1.377 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.293 3.707 3 O -0.418 6.418 4 N -0.346 5.346 5 C -0.016 4.016 6 C -0.175 4.175 7 C -0.144 4.144 8 C -0.108 4.108 9 H 0.083 0.917 10 C -0.013 4.013 11 H 0.084 0.916 12 N -0.368 5.368 13 C -0.048 4.048 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.008 4.008 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.032 0.968 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.077 -9.084 -1.675 17.682 hybrid contribution 1.642 0.849 0.115 1.852 sum -13.435 -8.235 -1.560 15.835 Atomic orbital electron populations 1.21925 0.92421 1.05068 1.03690 1.20773 0.90411 0.83354 0.76165 1.90766 1.70624 1.30968 1.49491 1.48217 1.07605 1.05596 1.73166 1.21749 0.96230 0.84549 0.99122 1.21969 0.97890 0.99358 0.98270 1.21479 0.92715 0.97587 1.02574 1.21467 0.96427 0.94858 0.98055 0.91735 1.21440 0.90799 0.95039 0.94060 0.91605 1.59207 1.21178 1.51421 1.05005 1.19887 0.95509 0.91791 0.97599 1.21159 0.92248 0.93112 1.49834 0.92714 1.25033 0.98613 0.95439 0.95210 1.69984 1.35441 0.98112 1.49222 0.86617 0.85639 0.77689 0.78171 1.20691 1.21301 1.19887 1.21788 0.77601 1.03221 0.98232 0.89664 0.89273 0.89738 0.90169 0.91524 0.91826 0.91200 0.92471 0.90404 0.84369 0.86246 0.96796 0.95892 0.92942 0.87932 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 8.67 36.01 0.31 -1.37 16 2 C 0.50 7.89 7.81 -10.98 -0.09 7.81 16 3 O -0.54 -11.40 16.50 5.55 0.09 -11.31 16 4 N -0.61 -8.93 2.97 -172.80 -0.51 -9.44 16 5 C 0.11 1.10 6.34 -3.71 -0.02 1.07 16 6 C -0.14 -1.45 6.08 -26.62 -0.16 -1.61 16 7 C -0.11 -1.44 5.03 -26.69 -0.13 -1.57 16 8 C -0.09 -1.50 2.08 -90.53 -0.19 -1.68 16 9 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 10 C 0.10 1.95 2.34 -67.72 -0.16 1.80 16 11 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 12 N -0.84 -15.29 8.42 -4.67 -0.04 -15.33 16 13 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 14 C -0.53 -14.44 8.55 -34.44 -0.29 -14.74 16 15 H 0.05 1.45 7.15 -52.49 -0.38 1.08 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.11 2.00 5.19 -3.74 -0.02 1.98 16 23 H 0.08 0.67 7.69 -51.93 -0.40 0.27 16 24 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 25 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 26 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 27 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.10 7.57 -51.93 -0.39 0.71 16 32 H 0.34 6.54 7.90 -39.29 -0.31 6.23 16 33 H 0.33 5.84 9.00 -39.29 -0.35 5.49 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.63 6.30 -51.93 -0.33 0.30 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.10 2.23 5.51 -51.93 -0.29 1.94 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -32.56 300.54 -7.29 -39.85 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.10 Total: 8.51 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.97 Total: -7.09 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.18 Total: -51.13 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.56 -7.29 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.256 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds