Wall clock time and date at job start Mon Mar 30 2020 04:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 120.00256 * 2 1 4 4 N 1.34783 * 120.00081 * 179.97438 * 2 1 3 5 5 C 1.46925 * 120.62680 * 359.97438 * 4 2 1 6 6 C 1.53186 * 108.77350 * 233.62653 * 5 4 2 7 7 C 1.53038 * 109.31652 * 305.36693 * 6 5 4 8 8 C 1.53042 * 109.53674 * 61.36799 * 7 6 5 9 9 H 1.09006 * 109.52682 * 58.60001 * 8 7 6 10 10 C 1.52994 * 109.50076 * 178.68161 * 8 7 6 11 11 H 1.09009 * 109.47154 * 59.83655 * 10 8 7 12 12 N 1.46899 * 109.47404 * 299.84121 * 10 8 7 13 13 C 1.52996 * 109.47347 * 179.83498 * 10 8 7 14 14 C 1.50702 * 109.47159 * 185.00014 * 13 10 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.46924 * 120.63164 * 180.02562 * 4 2 1 23 23 H 1.08999 * 109.47339 * 239.99654 * 1 2 3 24 24 H 1.08998 * 109.47128 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46437 * 120.00096 * 1 2 3 26 26 H 1.08993 * 109.58820 * 353.41982 * 5 4 2 27 27 H 1.09009 * 109.58154 * 113.84629 * 5 4 2 28 28 H 1.08998 * 109.50062 * 65.32242 * 6 5 4 29 29 H 1.09005 * 109.49796 * 185.41533 * 6 5 4 30 30 H 1.09000 * 109.46404 * 301.34938 * 7 6 5 31 31 H 1.09000 * 109.46537 * 181.38494 * 7 6 5 32 32 H 1.00898 * 111.00374 * 176.04529 * 12 10 8 33 33 H 1.00901 * 110.99243 * 299.99485 * 12 10 8 34 34 H 1.09004 * 109.47066 * 65.00217 * 13 10 8 35 35 H 1.08994 * 109.47405 * 305.00047 * 13 10 8 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.58287 * 6.58253 * 22 4 2 38 38 H 1.08998 * 109.58951 * 246.16047 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4603 -2.4476 0.0017 6 6 1.9685 -3.2983 1.1698 7 6 3.4898 -3.4334 1.0734 8 6 4.1337 -2.0483 1.1687 9 1 3.8502 -1.5788 2.1107 10 6 5.6560 -2.1873 1.1053 11 1 5.9390 -2.6579 0.1636 12 7 6.1192 -3.0168 2.2257 13 6 6.2989 -0.8019 1.1965 14 6 7.7892 -0.9265 1.0110 15 1 8.2335 -1.8968 0.8442 16 6 8.5850 0.1989 1.0479 17 7 8.0441 1.3803 1.2505 18 14 10.4314 0.0453 0.8103 19 1 10.7565 0.1662 -0.6337 20 1 11.1190 1.1241 1.5644 21 1 10.8868 -1.2764 1.3111 22 6 3.6501 -1.1834 0.0011 23 1 -0.3634 -0.5139 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3632 -0.5139 -0.8901 26 1 0.3921 -2.2656 0.1196 27 1 1.6426 -2.9703 -0.9374 28 1 1.7049 -2.8175 2.1118 29 1 1.5119 -4.2872 1.1254 30 1 3.7541 -3.8919 0.1205 31 1 3.8514 -4.0588 1.8897 32 1 7.1138 -3.1771 2.1700 33 1 5.8688 -2.6016 3.1106 34 1 6.0895 -0.3679 2.1742 35 1 5.8884 -0.1589 0.4180 36 1 8.6040 2.1720 1.2768 37 1 4.0266 -0.1673 0.1187 38 1 4.0113 -1.6027 -0.9380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:48 Heat of formation + Delta-G solvation = -83.328505 kcal Electronic energy + Delta-G solvation = -17941.285542 eV Core-core repulsion = 15202.450889 eV Total energy + Delta-G solvation = -2738.834653 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.20978 -39.05236 -36.92440 -34.71445 -33.32075 -32.17826 -30.18713 -29.84460 -26.47498 -25.60062 -24.21013 -22.02717 -21.00906 -19.90521 -18.66777 -17.97057 -17.08631 -16.64315 -16.58307 -16.04203 -15.43660 -15.08079 -14.86353 -14.44199 -14.21107 -14.16030 -14.03608 -13.80908 -13.35796 -13.02406 -12.96235 -12.81791 -12.66619 -12.30108 -12.07395 -11.90497 -11.68279 -11.60398 -11.28441 -11.04299 -10.76098 -10.63290 -9.63280 -9.33908 -8.23097 -6.36178 1.36476 1.37847 1.48805 1.63204 2.07907 2.36651 3.09574 3.64475 3.78825 3.87225 4.00743 4.15489 4.32952 4.36198 4.39725 4.51413 4.64765 4.65259 4.70103 4.80788 4.90351 4.92713 4.98217 5.07676 5.16804 5.26266 5.38540 5.44749 5.54460 5.56576 5.63097 5.74761 6.15036 6.41630 6.50199 6.72795 6.82742 7.20579 7.34258 8.88286 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029203 B = 0.006295 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.581272 B = 4446.772847 C = 5216.007235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.490 3.510 3 O -0.614 6.614 4 N -0.610 5.610 5 C 0.100 3.900 6 C -0.130 4.130 7 C -0.099 4.099 8 C -0.077 4.077 9 H 0.044 0.956 10 C 0.111 3.889 11 H 0.065 0.935 12 N -0.822 5.822 13 C -0.001 4.001 14 C -0.535 4.535 15 H 0.068 0.932 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.256 1.256 22 C 0.118 3.882 23 H 0.115 0.885 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.341 0.659 33 H 0.330 0.670 34 H -0.021 1.021 35 H -0.013 1.013 36 H 0.261 0.739 37 H 0.047 0.953 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.382 -12.313 -1.707 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.281 3.719 3 O -0.496 6.496 4 N -0.342 5.342 5 C -0.021 4.021 6 C -0.168 4.168 7 C -0.136 4.136 8 C -0.097 4.097 9 H 0.063 0.937 10 C -0.001 4.001 11 H 0.083 0.917 12 N -0.348 5.348 13 C -0.040 4.040 14 C -0.573 4.573 15 H 0.086 0.914 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.180 1.180 22 C -0.006 4.006 23 H 0.134 0.866 24 H 0.104 0.896 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.141 0.859 34 H -0.003 1.003 35 H 0.006 0.994 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.539 -12.198 -1.999 20.647 hybrid contribution 2.070 1.793 0.220 2.747 sum -14.469 -10.405 -1.779 17.910 Atomic orbital electron populations 1.21941 0.87045 1.06036 1.06661 1.22004 0.92935 0.82406 0.74521 1.90737 1.72493 1.33578 1.52815 1.48373 1.06197 1.07510 1.72155 1.22171 0.97865 0.82147 0.99906 1.21957 0.95290 1.01404 0.98172 1.21419 0.95026 0.94294 1.02878 1.21315 0.94461 0.97261 0.96660 0.93731 1.21243 0.92698 0.91553 0.94642 0.91711 1.59214 1.20874 1.50138 1.04581 1.19803 0.95407 0.94486 0.94261 1.21608 0.93264 0.93596 1.48802 0.91438 1.26052 1.04200 0.94988 0.94885 1.70160 1.37495 0.99110 1.50854 0.85419 0.78956 0.78307 0.78180 1.20114 1.21279 1.17971 1.21436 0.80404 1.00103 0.98645 0.86634 0.89574 0.86279 0.86167 0.89791 0.92273 0.87458 0.91769 0.90528 0.84670 0.85911 1.00307 0.99428 0.93026 0.93473 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 8.67 71.24 0.62 -2.02 16 2 C 0.49 15.36 7.81 87.66 0.68 16.04 16 3 O -0.61 -27.69 16.50 -3.05 -0.05 -27.74 16 4 N -0.61 -17.39 2.97 -819.00 -2.43 -19.82 16 5 C 0.10 1.65 6.34 86.36 0.55 2.20 16 6 C -0.13 -2.24 6.08 30.67 0.19 -2.06 16 7 C -0.10 -2.45 5.03 30.62 0.15 -2.29 16 8 C -0.08 -2.66 2.08 -10.73 -0.02 -2.69 16 9 H 0.04 1.70 8.14 -2.38 -0.02 1.69 16 10 C 0.11 4.52 2.34 44.91 0.10 4.63 16 11 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 12 N -0.82 -29.64 8.42 -168.68 -1.42 -31.06 16 13 C 0.00 -0.05 4.41 29.85 0.13 0.08 16 14 C -0.53 -30.20 8.55 25.60 0.22 -29.98 16 15 H 0.07 3.57 7.15 -2.91 -0.02 3.55 16 16 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 17 N -0.94 -59.67 13.29 21.45 0.28 -59.39 16 18 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 22 C 0.12 4.37 5.19 86.35 0.45 4.82 16 23 H 0.12 1.27 7.69 -2.39 -0.02 1.25 16 24 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 25 H 0.12 1.21 7.94 -2.38 -0.02 1.19 16 26 H 0.12 1.10 5.93 -2.39 -0.01 1.08 16 27 H 0.08 1.18 8.14 -2.38 -0.02 1.17 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.95 7.57 -2.39 -0.02 1.94 16 32 H 0.34 12.76 7.90 -89.70 -0.71 12.05 16 33 H 0.33 11.84 9.00 -89.69 -0.81 11.04 16 34 H -0.02 -1.29 8.14 -2.38 -0.02 -1.31 16 35 H -0.01 -0.76 6.30 -2.39 -0.02 -0.78 16 36 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 37 H 0.05 2.27 5.51 -2.38 -0.01 2.26 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -77.84 300.54 1.48 -76.36 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.46 Total: 25.57 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 3.53 Total: -11.02 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -3.57 Total: -110.27 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.84 1.48 -76.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.973 kcal (2) G-P(sol) polarization free energy of solvation -77.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds