Wall clock time and date at job start Mon Mar 30 2020 04:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00098 * 2 1 4 4 N 1.34776 * 120.00173 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.62775 * 359.97438 * 4 2 1 6 6 C 1.53193 * 108.77750 * 233.61041 * 5 4 2 7 7 C 1.53041 * 109.31048 * 305.36678 * 6 5 4 8 8 C 1.53035 * 109.53841 * 61.36409 * 7 6 5 9 9 H 1.09001 * 109.49825 * 58.61841 * 8 7 6 10 10 C 1.53004 * 109.49778 * 178.68074 * 8 7 6 11 11 H 1.09006 * 109.47304 * 304.93656 * 10 8 7 12 12 N 1.46903 * 109.47018 * 64.93260 * 10 8 7 13 13 C 1.52992 * 109.47321 * 184.93515 * 10 8 7 14 14 C 1.50700 * 109.47257 * 174.99983 * 13 10 8 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 10 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99854 * 359.72512 * 16 14 13 19 19 H 1.48498 * 109.46909 * 90.00086 * 18 16 14 20 20 H 1.48497 * 109.46701 * 209.99996 * 18 16 14 21 21 H 1.48500 * 109.46867 * 330.00101 * 18 16 14 22 22 C 1.46930 * 120.61008 * 180.02562 * 4 2 1 23 23 H 1.08999 * 109.47113 * 240.00191 * 1 2 3 24 24 H 1.08998 * 109.46771 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47066 * 120.00130 * 1 2 3 26 26 H 1.09003 * 109.58320 * 113.82197 * 5 4 2 27 27 H 1.08994 * 109.70491 * 353.46987 * 5 4 2 28 28 H 1.09000 * 109.49580 * 185.41776 * 6 5 4 29 29 H 1.08999 * 109.49781 * 65.31621 * 6 5 4 30 30 H 1.08999 * 109.46018 * 301.33788 * 7 6 5 31 31 H 1.09006 * 109.44799 * 181.37939 * 7 6 5 32 32 H 1.00905 * 110.99648 * 60.00169 * 12 10 8 33 33 H 1.00895 * 111.00030 * 183.95208 * 12 10 8 34 34 H 1.09004 * 109.47330 * 55.00006 * 13 10 8 35 35 H 1.08997 * 109.47279 * 295.00493 * 13 10 8 36 36 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 37 37 H 1.09008 * 109.61231 * 6.62387 * 22 4 2 38 38 H 1.08999 * 109.56567 * 246.19390 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4603 -2.4476 0.0017 6 6 1.9688 -3.2986 1.1696 7 6 3.4901 -3.4336 1.0727 8 6 4.1340 -2.0485 1.1680 9 1 3.8508 -1.5797 2.1104 10 6 5.6563 -2.1876 1.1041 11 1 5.9913 -2.8756 1.8803 12 7 6.0456 -2.7085 -0.2132 13 6 6.3031 -0.8184 1.3225 14 6 7.8009 -0.9741 1.3820 15 1 8.2468 -1.9519 1.2752 16 6 8.6019 0.1317 1.5740 17 7 9.9090 -0.0041 1.6254 18 14 7.8309 1.8238 1.7525 19 1 7.5467 2.0895 3.1856 20 1 8.7688 2.8522 1.2349 21 1 6.5643 1.8747 0.9789 22 6 3.6501 -1.1828 0.0011 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6422 -2.9701 -0.9375 27 1 0.3917 -2.2678 0.1186 28 1 1.5122 -4.2874 1.1251 29 1 1.7055 -2.8178 2.1117 30 1 3.7540 -3.8920 0.1197 31 1 3.8517 -4.0591 1.8889 32 1 5.7461 -2.0879 -0.9503 33 1 7.0404 -2.8701 -0.2586 34 1 5.9446 -0.3925 2.2596 35 1 6.0391 -0.1561 0.4980 36 1 10.4724 0.7738 1.7608 37 1 4.0268 -0.1667 0.1195 38 1 4.0111 -1.6014 -0.9383 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261059733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:51 Heat of formation + Delta-G solvation = -54.182549 kcal Electronic energy + Delta-G solvation = -18085.580676 eV Core-core repulsion = 15348.009886 eV Total energy + Delta-G solvation = -2737.570790 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13106 -37.83830 -35.54120 -32.78586 -32.12029 -30.78091 -29.17959 -28.56796 -25.11469 -24.65915 -22.55157 -20.62936 -19.30650 -18.76252 -17.17458 -16.74054 -16.00058 -15.39900 -14.93546 -14.45559 -14.26907 -13.92885 -13.39453 -13.28085 -13.02384 -12.91561 -12.76910 -12.55316 -12.15394 -12.08806 -11.77736 -11.12618 -11.01889 -10.86811 -10.64482 -10.47603 -10.34540 -9.81196 -9.77767 -9.59172 -9.16780 -8.57327 -8.48728 -7.81475 -6.08403 -4.07398 2.69022 3.09227 3.31661 3.39612 3.47595 4.44322 4.55872 4.74308 4.94157 5.04715 5.09887 5.19888 5.23060 5.28532 5.37035 5.40267 5.50931 5.64175 5.72508 5.86528 5.94026 5.98145 6.16239 6.26247 6.31723 6.52347 6.62666 6.67685 6.73541 7.09749 7.29814 7.49956 7.73801 7.98099 8.22662 8.25380 8.46950 8.94643 9.54996 11.04230 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.007289 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.796733 B = 3840.444497 C = 4654.452419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.547 6.547 4 N -0.611 5.611 5 C 0.108 3.892 6 C -0.137 4.137 7 C -0.107 4.107 8 C -0.092 4.092 9 H 0.067 0.933 10 C 0.109 3.891 11 H 0.075 0.925 12 N -0.841 5.841 13 C -0.047 4.047 14 C -0.523 4.523 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.901 5.901 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.113 3.887 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.326 0.674 33 H 0.349 0.651 34 H 0.013 0.987 35 H 0.017 0.983 36 H 0.263 0.737 37 H 0.093 0.907 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.604 -6.256 -3.286 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.424 6.424 4 N -0.345 5.345 5 C -0.015 4.015 6 C -0.175 4.175 7 C -0.144 4.144 8 C -0.112 4.112 9 H 0.086 0.914 10 C -0.003 4.003 11 H 0.093 0.907 12 N -0.370 5.370 13 C -0.085 4.085 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.539 5.539 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.188 1.188 22 C -0.009 4.009 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.586 -6.220 -3.096 20.782 hybrid contribution 0.352 1.812 0.193 1.856 sum -19.234 -4.408 -2.903 19.945 Atomic orbital electron populations 1.21925 0.92290 1.05112 1.03803 1.20793 0.90490 0.83309 0.76018 1.90742 1.70715 1.31073 1.49888 1.48222 1.07556 1.05691 1.73014 1.21740 0.96172 0.84345 0.99256 1.21970 0.97823 0.99508 0.98238 1.21487 0.92766 0.97061 1.03123 1.21582 0.96393 0.95247 0.97995 0.91430 1.21263 0.90693 0.96582 0.91782 0.90719 1.59290 1.22047 1.51597 1.04064 1.20375 0.97306 0.94161 0.96701 1.21059 0.89088 0.95689 1.50231 0.90893 1.25007 0.94667 0.99084 0.94416 1.69915 1.03484 1.30460 1.50077 0.86832 0.79678 0.84268 0.78877 1.20347 1.21409 1.18817 1.21791 0.77859 1.02319 0.98957 0.89588 0.89271 0.89633 0.91297 0.90120 0.91027 0.91907 0.90531 0.92018 0.86244 0.83776 0.96916 0.96487 0.92720 0.88902 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 8.67 36.01 0.31 -1.23 16 2 C 0.51 7.36 7.81 -10.99 -0.09 7.27 16 3 O -0.55 -10.79 16.50 5.56 0.09 -10.70 16 4 N -0.61 -8.24 2.97 -172.79 -0.51 -8.75 16 5 C 0.11 1.02 6.34 -3.71 -0.02 1.00 16 6 C -0.14 -1.35 6.08 -26.61 -0.16 -1.51 16 7 C -0.11 -1.36 5.04 -26.69 -0.13 -1.50 16 8 C -0.09 -1.47 2.16 -90.53 -0.20 -1.67 16 9 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 10 C 0.11 2.07 2.52 -67.71 -0.17 1.90 16 11 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 12 N -0.84 -14.74 8.54 -4.66 -0.04 -14.78 16 13 C -0.05 -1.10 3.33 -27.89 -0.09 -1.19 16 14 C -0.52 -14.50 9.10 -34.44 -0.31 -14.81 16 15 H 0.07 2.14 7.39 -52.49 -0.39 1.75 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 18 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.26 -6.74 6.54 56.52 0.37 -6.38 16 22 C 0.11 1.81 5.02 -3.73 -0.02 1.80 16 23 H 0.09 0.61 7.69 -51.93 -0.40 0.21 16 24 H 0.09 0.81 8.12 -51.93 -0.42 0.38 16 25 H 0.08 0.57 7.94 -51.93 -0.41 0.16 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.55 5.94 -51.93 -0.31 0.24 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.01 7.79 -51.93 -0.40 0.60 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.33 5.52 6.92 -39.29 -0.27 5.25 16 33 H 0.35 6.67 7.90 -39.29 -0.31 6.36 16 34 H 0.01 0.31 7.58 -51.93 -0.39 -0.09 16 35 H 0.02 0.41 6.00 -51.93 -0.31 0.10 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.09 1.83 5.84 -51.92 -0.30 1.53 16 38 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 LS Contribution 294.34 15.07 4.44 4.44 Total: -1.00 -32.73 294.34 -6.86 -39.59 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.96 Total: 7.30 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.98 Total: -8.00 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.22 Total: -50.48 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.73 -6.86 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.589 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds