Wall clock time and date at job start Mon Mar 30 2020 04:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21284 * 120.00269 * 2 1 4 4 N 1.34783 * 120.00243 * 180.02562 * 2 1 3 5 5 C 1.46921 * 120.62785 * 5.52174 * 4 2 1 6 6 C 1.53195 * 108.77507 * 233.58423 * 5 4 2 7 7 C 1.53033 * 109.31164 * 305.36660 * 6 5 4 8 8 C 1.53043 * 109.54207 * 61.36529 * 7 6 5 9 9 H 1.09003 * 109.52245 * 58.59582 * 8 7 6 10 10 C 1.52997 * 109.50145 * 178.68282 * 8 7 6 11 11 H 1.08999 * 109.46867 * 59.83535 * 10 8 7 12 12 C 1.50701 * 109.46883 * 299.83986 * 10 8 7 13 13 H 1.08005 * 119.99493 * 305.00125 * 12 10 8 14 14 C 1.37874 * 120.00153 * 124.73658 * 12 10 8 15 15 N 1.31514 * 119.99865 * 355.24063 * 14 12 10 16 16 Si 1.86800 * 120.00002 * 175.25050 * 14 12 10 17 17 H 1.48494 * 109.47086 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47112 * 119.99578 * 16 14 12 19 19 H 1.48505 * 109.46920 * 239.99285 * 16 14 12 20 20 C 1.52996 * 109.47305 * 179.83437 * 10 8 7 21 21 N 1.46900 * 109.47525 * 185.34949 * 20 10 8 22 22 C 1.46924 * 120.63225 * 185.49793 * 4 2 1 23 23 H 1.09007 * 109.47212 * 185.53482 * 1 2 3 24 24 H 1.08996 * 109.47244 * 305.53635 * 1 2 3 25 25 H 1.09004 * 109.47463 * 65.53769 * 1 2 3 26 26 H 1.09004 * 109.59016 * 353.37599 * 5 4 2 27 27 H 1.09002 * 109.58822 * 113.65326 * 5 4 2 28 28 H 1.09000 * 109.49718 * 65.31816 * 6 5 4 29 29 H 1.08998 * 109.49746 * 185.38090 * 6 5 4 30 30 H 1.09002 * 109.46208 * 301.34258 * 7 6 5 31 31 H 1.09005 * 109.46108 * 181.38434 * 7 6 5 32 32 H 0.97001 * 120.00267 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.47099 * 305.35728 * 20 10 8 34 34 H 1.09006 * 109.46822 * 65.35143 * 20 10 8 35 35 H 1.00895 * 111.00170 * 174.93858 * 21 20 10 36 36 H 1.00895 * 110.99940 * 298.89797 * 21 20 10 37 37 H 1.08998 * 109.58379 * 6.62352 * 22 4 2 38 38 H 1.09003 * 109.70546 * 246.27405 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4654 -2.4446 -0.1227 6 6 1.8766 -3.3533 1.0400 7 6 3.4010 -3.4864 1.0637 8 6 4.0319 -2.1091 1.2806 9 1 3.6701 -1.6863 2.2179 10 6 5.5545 -2.2478 1.3369 11 1 5.9155 -2.6717 0.3999 12 6 5.9343 -3.1557 2.4782 13 1 5.5896 -2.9387 3.4785 14 6 6.7171 -4.2663 2.2445 15 7 7.0546 -4.5859 1.0143 16 14 7.2982 -5.3173 3.6754 17 1 6.7862 -4.7479 4.9477 18 1 6.7880 -6.7022 3.5116 19 1 8.7828 -5.3369 3.7042 20 6 6.1847 -0.8700 1.5497 21 7 7.6474 -0.9838 1.4759 22 6 3.6450 -1.1863 0.1206 23 1 -0.3634 -1.0229 0.0991 24 1 -0.3633 0.5973 0.8362 25 1 -0.3634 0.4256 -0.9354 26 1 0.3907 -2.2666 -0.0850 27 1 1.7240 -2.9192 -1.0693 28 1 1.5347 -2.9191 1.9796 29 1 1.4270 -4.3376 0.9092 30 1 3.7444 -3.8977 0.1144 31 1 3.6949 -4.1523 1.8751 32 1 7.6051 -5.3674 0.8498 33 1 5.8339 -0.1867 0.7763 34 1 5.8990 -0.4872 2.5295 35 1 8.0839 -0.0758 1.5310 36 1 7.9990 -1.5983 2.1948 37 1 4.0084 -0.1780 0.3189 38 1 4.0855 -1.5581 -0.8046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:59 Heat of formation + Delta-G solvation = -48.355919 kcal Electronic energy + Delta-G solvation = -18248.275537 eV Core-core repulsion = 15510.957409 eV Total energy + Delta-G solvation = -2737.318128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.82289 -37.33273 -35.13961 -32.42176 -32.01885 -31.10414 -29.59515 -26.87542 -25.11006 -23.70999 -22.59336 -20.36500 -19.10847 -18.56781 -16.92101 -16.45591 -15.41332 -15.15853 -14.66863 -14.47921 -13.96734 -13.79872 -13.27857 -13.06243 -12.98067 -12.66001 -12.44405 -12.10599 -11.88025 -11.62347 -11.26428 -10.97985 -10.84967 -10.59008 -10.51652 -10.15415 -10.04076 -9.69684 -9.32806 -8.94504 -8.86264 -8.46395 -8.15411 -7.47702 -5.98153 -4.00672 2.87409 3.26888 3.36117 3.37222 3.40270 4.43005 4.77590 4.92470 5.23266 5.29479 5.33039 5.45962 5.54431 5.66224 5.72343 5.86588 5.93810 6.02115 6.11338 6.28980 6.32316 6.50329 6.56720 6.65846 6.70334 6.81136 7.15916 7.20327 7.27765 7.46958 7.75579 7.85427 7.98069 8.37130 8.42986 8.47316 8.63455 9.13608 9.61330 11.09599 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030273 B = 0.007297 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.687434 B = 3836.033092 C = 4442.199625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.506 3.494 3 O -0.558 6.558 4 N -0.606 5.606 5 C 0.102 3.898 6 C -0.138 4.138 7 C -0.096 4.096 8 C -0.083 4.083 9 H 0.049 0.951 10 C 0.037 3.963 11 H 0.079 0.921 12 C -0.511 4.511 13 H 0.047 0.953 14 C 0.076 3.924 15 N -0.876 5.876 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.284 1.284 20 C 0.073 3.927 21 N -0.837 5.837 22 C 0.110 3.890 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.259 0.741 33 H 0.038 0.962 34 H 0.000 1.000 35 H 0.311 0.689 36 H 0.347 0.653 37 H 0.085 0.915 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 2.606 -1.607 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.295 3.705 3 O -0.437 6.437 4 N -0.339 5.339 5 C -0.021 4.021 6 C -0.176 4.176 7 C -0.134 4.134 8 C -0.103 4.103 9 H 0.068 0.932 10 C 0.018 3.982 11 H 0.097 0.903 12 C -0.549 4.549 13 H 0.065 0.935 14 C -0.127 4.127 15 N -0.513 5.513 16 Si 0.706 3.294 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.058 4.058 21 N -0.365 5.365 22 C -0.012 4.012 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.018 0.982 35 H 0.121 0.879 36 H 0.161 0.839 37 H 0.103 0.897 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.964 2.696 -2.449 11.553 hybrid contribution 0.307 -0.345 1.816 1.874 sum -10.657 2.351 -0.633 10.931 Atomic orbital electron populations 1.22019 0.92778 1.04330 1.04729 1.20707 0.90346 0.83425 0.76044 1.90684 1.70715 1.31217 1.51111 1.48328 1.08507 1.05690 1.71382 1.21903 0.96363 0.84348 0.99442 1.22020 0.99352 0.98560 0.97676 1.21351 0.90874 0.98130 1.02998 1.21595 0.99910 0.93658 0.95125 0.93208 1.18977 0.87293 0.91284 1.00644 0.90268 1.20934 1.31668 1.08662 0.93643 0.93495 1.24889 0.95900 0.97027 0.94927 1.69920 1.36689 1.26184 1.18530 0.86777 0.78714 0.80542 0.83332 1.20032 1.21189 1.21023 1.21971 0.88239 0.99538 0.96082 1.58611 1.06058 1.14191 1.57640 1.22022 0.77414 1.01965 0.99775 0.89949 0.89171 0.89232 0.90011 0.91461 0.92190 0.91560 0.92404 0.90333 0.93124 0.94337 0.98219 0.87935 0.83908 0.89714 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 10.08 36.00 0.36 -1.53 16 2 C 0.51 8.13 7.80 -10.99 -0.09 8.05 16 3 O -0.56 -11.34 16.54 5.55 0.09 -11.25 16 4 N -0.61 -9.71 2.97 -172.77 -0.51 -10.22 16 5 C 0.10 1.30 6.36 -3.71 -0.02 1.28 16 6 C -0.14 -1.96 6.08 -26.61 -0.16 -2.13 16 7 C -0.10 -1.81 4.95 -26.69 -0.13 -1.94 16 8 C -0.08 -1.68 1.91 -90.50 -0.17 -1.85 16 9 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 10 C 0.04 0.88 1.90 -91.77 -0.17 0.70 16 11 H 0.08 2.13 6.92 -51.93 -0.36 1.77 16 12 C -0.51 -13.00 6.17 -34.44 -0.21 -13.22 16 13 H 0.05 1.23 7.82 -52.48 -0.41 0.82 16 14 C 0.08 1.98 5.45 -17.82 -0.10 1.88 16 15 N -0.88 -24.06 12.61 55.43 0.70 -23.36 16 16 Si 0.88 20.41 29.54 -169.99 -5.02 15.39 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.07 1.60 6.01 -3.83 -0.02 1.58 16 21 N -0.84 -17.98 9.58 -10.37 -0.10 -18.08 16 22 C 0.11 2.06 5.18 -3.71 -0.02 2.04 16 23 H 0.08 0.69 5.17 -51.92 -0.27 0.42 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.78 5.06 -51.93 -0.26 0.52 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.66 7.18 -51.93 -0.37 1.29 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.04 0.82 6.29 -51.93 -0.33 0.49 16 34 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.31 5.68 9.08 -39.29 -0.36 5.33 16 36 H 0.35 7.83 8.22 -39.29 -0.32 7.51 16 37 H 0.08 1.73 5.54 -51.93 -0.29 1.44 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 297.31 15.07 4.48 4.48 Total: -1.00 -29.74 297.31 -7.01 -36.75 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.91 Total: 11.42 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.74 Total: -5.13 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.09 Total: -51.66 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.74 -7.01 -36.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.609 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds