Wall clock time and date at job start Mon Mar 30 2020 04:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21284 * 120.00269 * 2 1 4 4 N 1.34783 * 120.00243 * 180.02562 * 2 1 3 5 5 C 1.46921 * 120.62785 * 5.52174 * 4 2 1 6 6 C 1.53195 * 108.77507 * 233.58423 * 5 4 2 7 7 C 1.53033 * 109.31164 * 305.36660 * 6 5 4 8 8 C 1.53043 * 109.54207 * 61.36529 * 7 6 5 9 9 H 1.09003 * 109.52245 * 58.59582 * 8 7 6 10 10 C 1.52997 * 109.50145 * 178.68282 * 8 7 6 11 11 H 1.08999 * 109.46867 * 59.83535 * 10 8 7 12 12 C 1.50701 * 109.46883 * 299.83986 * 10 8 7 13 13 H 1.08005 * 119.99493 * 305.00125 * 12 10 8 14 14 C 1.37874 * 120.00153 * 124.73658 * 12 10 8 15 15 N 1.31514 * 119.99865 * 355.24063 * 14 12 10 16 16 Si 1.86800 * 120.00002 * 175.25050 * 14 12 10 17 17 H 1.48494 * 109.47086 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47112 * 119.99578 * 16 14 12 19 19 H 1.48505 * 109.46920 * 239.99285 * 16 14 12 20 20 C 1.52996 * 109.47305 * 179.83437 * 10 8 7 21 21 N 1.46900 * 109.47525 * 185.34949 * 20 10 8 22 22 C 1.46924 * 120.63225 * 185.49793 * 4 2 1 23 23 H 1.09007 * 109.47212 * 185.53482 * 1 2 3 24 24 H 1.08996 * 109.47244 * 305.53635 * 1 2 3 25 25 H 1.09004 * 109.47463 * 65.53769 * 1 2 3 26 26 H 1.09004 * 109.59016 * 353.37599 * 5 4 2 27 27 H 1.09002 * 109.58822 * 113.65326 * 5 4 2 28 28 H 1.09000 * 109.49718 * 65.31816 * 6 5 4 29 29 H 1.08998 * 109.49746 * 185.38090 * 6 5 4 30 30 H 1.09002 * 109.46208 * 301.34258 * 7 6 5 31 31 H 1.09005 * 109.46108 * 181.38434 * 7 6 5 32 32 H 0.97001 * 120.00267 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.47099 * 305.35728 * 20 10 8 34 34 H 1.09006 * 109.46822 * 65.35143 * 20 10 8 35 35 H 1.00895 * 111.00170 * 174.93858 * 21 20 10 36 36 H 1.00895 * 110.99940 * 298.89797 * 21 20 10 37 37 H 1.08998 * 109.58379 * 6.62352 * 22 4 2 38 38 H 1.09003 * 109.70546 * 246.27405 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4654 -2.4446 -0.1227 6 6 1.8766 -3.3533 1.0400 7 6 3.4010 -3.4864 1.0637 8 6 4.0319 -2.1091 1.2806 9 1 3.6701 -1.6863 2.2179 10 6 5.5545 -2.2478 1.3369 11 1 5.9155 -2.6717 0.3999 12 6 5.9343 -3.1557 2.4782 13 1 5.5896 -2.9387 3.4785 14 6 6.7171 -4.2663 2.2445 15 7 7.0546 -4.5859 1.0143 16 14 7.2982 -5.3173 3.6754 17 1 6.7862 -4.7479 4.9477 18 1 6.7880 -6.7022 3.5116 19 1 8.7828 -5.3369 3.7042 20 6 6.1847 -0.8700 1.5497 21 7 7.6474 -0.9838 1.4759 22 6 3.6450 -1.1863 0.1206 23 1 -0.3634 -1.0229 0.0991 24 1 -0.3633 0.5973 0.8362 25 1 -0.3634 0.4256 -0.9354 26 1 0.3907 -2.2666 -0.0850 27 1 1.7240 -2.9192 -1.0693 28 1 1.5347 -2.9191 1.9796 29 1 1.4270 -4.3376 0.9092 30 1 3.7444 -3.8977 0.1144 31 1 3.6949 -4.1523 1.8751 32 1 7.6051 -5.3674 0.8498 33 1 5.8339 -0.1867 0.7763 34 1 5.8990 -0.4872 2.5295 35 1 8.0839 -0.0758 1.5310 36 1 7.9990 -1.5983 2.1948 37 1 4.0084 -0.1780 0.3189 38 1 4.0855 -1.5581 -0.8046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:59 Heat of formation + Delta-G solvation = -69.372600 kcal Electronic energy + Delta-G solvation = -18249.186889 eV Core-core repulsion = 15510.957409 eV Total energy + Delta-G solvation = -2738.229480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14317 -38.84465 -36.76215 -34.07619 -33.83695 -32.46849 -30.77676 -28.53651 -26.68377 -25.38788 -24.04150 -21.86023 -20.83520 -19.90685 -18.41618 -18.11866 -16.77432 -16.53576 -16.42673 -16.22169 -15.51200 -15.22674 -14.77146 -14.63061 -14.32054 -14.07928 -13.59870 -13.54556 -13.41116 -12.95920 -12.88187 -12.80442 -12.44721 -12.35970 -12.05225 -11.72818 -11.57724 -11.21169 -10.91530 -10.77363 -10.63663 -10.42773 -9.54379 -9.26298 -8.01002 -6.08000 1.40340 1.45566 1.53460 1.65626 2.14476 2.47785 3.28800 3.70691 3.89798 4.05667 4.15006 4.16199 4.28646 4.46383 4.52341 4.62542 4.66657 4.69876 4.75047 4.82235 4.89996 4.98663 5.09194 5.18336 5.21676 5.34941 5.44415 5.56549 5.65899 5.73948 5.82856 6.00924 6.45189 6.56331 6.58155 6.92101 7.11795 7.21305 7.56048 9.06646 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030273 B = 0.007297 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.687434 B = 3836.033092 C = 4442.199625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.496 3.504 3 O -0.610 6.610 4 N -0.609 5.609 5 C 0.100 3.900 6 C -0.129 4.129 7 C -0.091 4.091 8 C -0.074 4.074 9 H 0.039 0.961 10 C 0.039 3.961 11 H 0.043 0.957 12 C -0.511 4.511 13 H 0.037 0.963 14 C 0.037 3.963 15 N -0.906 5.906 16 Si 0.935 3.065 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.078 3.922 21 N -0.843 5.843 22 C 0.120 3.880 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.129 0.871 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.257 0.743 33 H 0.044 0.956 34 H -0.003 1.003 35 H 0.331 0.669 36 H 0.341 0.659 37 H 0.064 0.936 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.617 2.317 -1.436 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.288 3.712 3 O -0.493 6.493 4 N -0.341 5.341 5 C -0.021 4.021 6 C -0.167 4.167 7 C -0.129 4.129 8 C -0.094 4.094 9 H 0.057 0.943 10 C 0.020 3.980 11 H 0.062 0.938 12 C -0.549 4.549 13 H 0.055 0.945 14 C -0.163 4.163 15 N -0.545 5.545 16 Si 0.762 3.238 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.053 4.053 21 N -0.373 5.373 22 C -0.003 4.003 23 H 0.130 0.870 24 H 0.119 0.881 25 H 0.127 0.873 26 H 0.146 0.854 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.016 0.984 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.347 2.399 -2.274 13.750 hybrid contribution 1.062 -0.220 1.753 2.062 sum -12.286 2.179 -0.521 12.488 Atomic orbital electron populations 1.22044 0.87667 1.06633 1.06188 1.21811 0.92683 0.82312 0.74424 1.90661 1.72258 1.33025 1.53324 1.48434 1.07175 1.07406 1.71091 1.22183 0.98569 0.82330 0.98983 1.21954 0.95321 1.00708 0.98734 1.21234 0.94714 0.96206 1.00761 1.21396 0.97770 0.95030 0.95228 0.94277 1.18884 0.89608 0.91423 0.98134 0.93827 1.21040 1.31330 1.08953 0.93560 0.94514 1.25427 0.96104 0.98085 0.96715 1.70043 1.37584 1.26715 1.20136 0.85886 0.78042 0.79066 0.80814 1.19812 1.20977 1.21000 1.21867 0.88561 0.98822 0.96047 1.58570 1.05849 1.15472 1.57369 1.21599 0.80094 1.00095 0.98473 0.87026 0.88122 0.87336 0.85381 0.90660 0.91826 0.88756 0.94149 0.93205 0.93319 0.93766 0.98448 0.85811 0.84628 0.91718 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 10.08 71.23 0.72 -2.08 16 2 C 0.50 14.98 7.80 87.65 0.68 15.66 16 3 O -0.61 -24.62 16.54 -3.04 -0.05 -24.67 16 4 N -0.61 -18.49 2.97 -818.91 -2.43 -20.93 16 5 C 0.10 2.20 6.36 86.36 0.55 2.75 16 6 C -0.13 -3.34 6.08 30.67 0.19 -3.15 16 7 C -0.09 -3.45 4.95 30.62 0.15 -3.30 16 8 C -0.07 -3.06 1.91 -10.72 -0.02 -3.08 16 9 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 10 C 0.04 1.89 1.90 -11.54 -0.02 1.87 16 11 H 0.04 2.44 6.92 -2.39 -0.02 2.42 16 12 C -0.51 -26.56 6.17 25.60 0.16 -26.40 16 13 H 0.04 1.96 7.82 -2.91 -0.02 1.93 16 14 C 0.04 1.96 5.45 84.65 0.46 2.42 16 15 N -0.91 -50.90 12.61 21.45 0.27 -50.63 16 16 Si 0.93 42.33 29.54 68.60 2.03 44.36 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 C 0.08 3.52 6.01 86.30 0.52 4.04 16 21 N -0.84 -36.73 9.58 -186.72 -1.79 -38.52 16 22 C 0.12 4.59 5.18 86.36 0.45 5.04 16 23 H 0.11 1.17 5.17 -2.38 -0.01 1.16 16 24 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.13 1.67 5.06 -2.39 -0.01 1.66 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 2.14 7.18 -2.38 -0.02 2.12 16 32 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.04 1.93 6.29 -2.39 -0.02 1.91 16 34 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 35 H 0.33 12.03 9.08 -89.70 -0.81 11.22 16 36 H 0.34 15.61 8.22 -89.70 -0.74 14.87 16 37 H 0.06 2.72 5.54 -2.39 -0.01 2.71 16 38 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -67.00 297.31 1.37 -65.63 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.49 Total: 30.99 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 3.83 Total: -6.23 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -3.95 Total: -110.07 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -67.00 1.37 -65.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.747 kcal (2) G-P(sol) polarization free energy of solvation -66.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds