Wall clock time and date at job start Mon Mar 30 2020 04:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99547 * 2 1 4 4 N 1.34772 * 119.99938 * 180.02562 * 2 1 3 5 5 C 1.46932 * 120.63236 * 359.97438 * 4 2 1 6 6 C 1.53199 * 108.77287 * 126.37035 * 5 4 2 7 7 C 1.53044 * 109.30965 * 54.63827 * 6 5 4 8 8 C 1.53042 * 109.53632 * 298.63165 * 7 6 5 9 9 H 1.08996 * 109.49897 * 301.41258 * 8 7 6 10 10 C 1.53007 * 109.49338 * 181.34929 * 8 7 6 11 11 H 1.09001 * 109.46962 * 300.00091 * 10 8 7 12 12 C 1.50702 * 109.46787 * 180.02562 * 10 8 7 13 13 H 1.07995 * 120.00008 * 354.33221 * 12 10 8 14 14 C 1.37879 * 119.99703 * 174.33400 * 12 10 8 15 15 N 1.31514 * 120.00053 * 351.06168 * 14 12 10 16 16 Si 1.86797 * 120.00070 * 171.06516 * 14 12 10 17 17 H 1.48502 * 109.47248 * 89.99712 * 16 14 12 18 18 H 1.48496 * 109.47458 * 209.99506 * 16 14 12 19 19 H 1.48506 * 109.47086 * 330.00044 * 16 14 12 20 20 C 1.52999 * 109.47002 * 60.00328 * 10 8 7 21 21 N 1.46895 * 109.47433 * 59.20182 * 20 10 8 22 22 C 1.46929 * 120.62977 * 179.72010 * 4 2 1 23 23 H 1.08996 * 109.47190 * 89.99472 * 1 2 3 24 24 H 1.09000 * 109.46885 * 329.99399 * 1 2 3 25 25 H 1.09004 * 109.47141 * 209.99676 * 1 2 3 26 26 H 1.08991 * 109.58703 * 246.16093 * 5 4 2 27 27 H 1.08997 * 109.58394 * 6.44715 * 5 4 2 28 28 H 1.08999 * 109.49326 * 174.58732 * 6 5 4 29 29 H 1.08996 * 109.49548 * 294.68751 * 6 5 4 30 30 H 1.08997 * 109.45841 * 58.65237 * 7 6 5 31 31 H 1.08994 * 109.45762 * 178.62628 * 7 6 5 32 32 H 0.97005 * 120.00088 * 179.97438 * 15 14 12 33 33 H 1.08997 * 109.47001 * 179.20393 * 20 10 8 34 34 H 1.09000 * 109.46885 * 299.20027 * 20 10 8 35 35 H 1.00895 * 111.00492 * 181.79317 * 21 20 10 36 36 H 1.00904 * 110.99831 * 305.74911 * 21 20 10 37 37 H 1.08998 * 109.58514 * 353.41295 * 22 4 2 38 38 H 1.08993 * 109.59119 * 113.84092 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4603 -2.4477 -0.0005 6 6 1.9677 -3.2989 -1.1689 7 6 3.4891 -3.4338 -1.0734 8 6 4.1328 -2.0487 -1.1697 9 1 3.8482 -1.5800 -2.1117 10 6 5.6553 -2.1878 -1.1080 11 1 5.9395 -2.6556 -0.1653 12 6 6.2885 -0.8235 -1.2022 13 1 5.6744 0.0451 -1.3884 14 6 7.6519 -0.6844 -1.0508 15 7 8.3769 -1.7065 -0.6518 16 14 8.4692 0.9559 -1.4123 17 1 8.4983 1.7777 -0.1758 18 1 9.8577 0.7237 -1.8849 19 1 7.7014 1.6705 -2.4636 20 6 6.1358 -3.0552 -2.2731 21 7 5.7362 -2.4345 -3.5431 22 6 3.6501 -1.1833 -0.0067 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 0.8899 0.5139 25 1 -0.3633 -0.8900 0.5138 26 1 1.6431 -2.9698 0.9385 27 1 0.3918 -2.2656 -0.1154 28 1 1.5111 -4.2876 -1.1236 29 1 1.7034 -2.8183 -2.1108 30 1 3.7540 -3.8919 -0.1205 31 1 3.8501 -4.0593 -1.8898 32 1 9.3361 -1.6088 -0.5456 33 1 7.2217 -3.1427 -2.2373 34 1 5.6888 -4.0464 -2.1966 35 1 6.0166 -3.0035 -4.3277 36 1 4.7431 -2.2568 -3.5619 37 1 4.0261 -0.1675 -0.1281 38 1 4.0149 -1.6005 0.9318 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:02 Heat of formation + Delta-G solvation = -69.371058 kcal Electronic energy + Delta-G solvation = -18363.389079 eV Core-core repulsion = 15625.159666 eV Total energy + Delta-G solvation = -2738.229413 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14875 -39.02468 -36.81993 -34.15862 -33.49206 -32.51147 -30.66763 -28.67716 -26.50723 -25.70056 -23.88846 -22.50091 -20.40080 -19.85070 -18.20809 -18.02927 -17.16515 -16.66621 -16.36197 -16.14319 -15.52023 -14.98817 -14.85274 -14.68574 -14.23615 -14.08178 -13.75160 -13.54567 -13.22003 -13.09016 -12.90730 -12.70232 -12.63249 -12.24380 -11.92304 -11.85230 -11.66566 -11.57138 -11.02116 -10.75183 -10.56753 -10.38433 -9.54873 -9.08827 -8.05825 -6.05519 1.36986 1.38726 1.50073 1.69082 2.17231 2.48412 3.28525 3.73935 3.95625 4.06337 4.11870 4.14438 4.25571 4.47588 4.50294 4.55701 4.66113 4.71910 4.78557 4.91940 4.95749 5.00394 5.08886 5.12782 5.16378 5.21332 5.39526 5.47867 5.62892 5.70155 5.85667 6.04218 6.36988 6.58446 6.73779 6.92117 7.02789 7.26625 7.57717 9.02999 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.008367 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.036649 B = 3345.590146 C = 4118.281738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.491 3.509 3 O -0.613 6.613 4 N -0.610 5.610 5 C 0.098 3.902 6 C -0.126 4.126 7 C -0.116 4.116 8 C -0.075 4.075 9 H 0.052 0.948 10 C 0.054 3.946 11 H 0.005 0.995 12 C -0.483 4.483 13 H 0.033 0.967 14 C 0.020 3.980 15 N -0.922 5.922 16 Si 0.932 3.068 17 H -0.284 1.284 18 H -0.283 1.283 19 H -0.279 1.279 20 C 0.090 3.910 21 N -0.841 5.841 22 C 0.131 3.869 23 H 0.111 0.889 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.256 0.744 33 H 0.043 0.957 34 H 0.010 0.990 35 H 0.332 0.668 36 H 0.333 0.667 37 H 0.052 0.948 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.955 -6.876 -0.488 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.282 3.718 3 O -0.496 6.496 4 N -0.342 5.342 5 C -0.023 4.023 6 C -0.164 4.164 7 C -0.153 4.153 8 C -0.095 4.095 9 H 0.070 0.930 10 C 0.035 3.965 11 H 0.023 0.977 12 C -0.521 4.521 13 H 0.051 0.949 14 C -0.177 4.177 15 N -0.563 5.563 16 Si 0.760 3.240 17 H -0.211 1.211 18 H -0.209 1.209 19 H -0.204 1.204 20 C -0.041 4.041 21 N -0.372 5.372 22 C 0.008 3.992 23 H 0.130 0.870 24 H 0.110 0.890 25 H 0.134 0.866 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.071 0.929 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.997 -5.793 -0.213 17.958 hybrid contribution 0.899 0.270 -0.239 0.969 sum -16.098 -5.523 -0.453 17.025 Atomic orbital electron populations 1.21967 0.87312 1.06326 1.06308 1.21926 0.92794 0.82456 0.74592 1.90699 1.72432 1.33408 1.53044 1.48467 1.06630 1.07328 1.71818 1.22170 0.98055 0.82441 0.99613 1.21912 0.94577 1.01354 0.98537 1.21654 0.96148 0.95646 1.01863 1.21234 0.96083 0.95496 0.96678 0.92990 1.18661 0.90261 0.94317 0.93277 0.97656 1.21100 0.91896 0.93396 1.45715 0.94874 1.25392 0.98288 0.98511 0.95514 1.70013 1.06025 1.31765 1.48497 0.85964 0.77952 0.82015 0.78069 1.21061 1.20861 1.20445 1.21538 0.99283 0.92867 0.90425 1.58490 1.21010 1.53847 1.03805 1.21227 0.79223 1.00553 0.98188 0.87040 0.88962 0.86613 0.90398 0.85812 0.87708 0.91696 0.92398 0.91862 0.93503 0.93897 0.97265 0.85605 0.85286 0.92892 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.46 71.24 0.67 -2.07 16 2 C 0.49 15.64 7.81 87.66 0.68 16.32 16 3 O -0.61 -27.30 16.51 -3.03 -0.05 -27.35 16 4 N -0.61 -18.49 2.98 -819.68 -2.44 -20.93 16 5 C 0.10 1.83 6.22 86.36 0.54 2.37 16 6 C -0.13 -2.42 6.08 30.68 0.19 -2.24 16 7 C -0.12 -3.29 4.85 30.62 0.15 -3.14 16 8 C -0.08 -2.91 1.52 -10.85 -0.02 -2.93 16 9 H 0.05 2.12 6.52 -2.39 -0.02 2.10 16 10 C 0.05 2.62 1.59 -11.54 -0.02 2.60 16 11 H 0.01 0.29 8.09 -2.39 -0.02 0.27 16 12 C -0.48 -27.36 7.33 25.60 0.19 -27.17 16 13 H 0.03 1.98 6.96 -2.91 -0.02 1.96 16 14 C 0.02 1.18 5.21 84.66 0.44 1.62 16 15 N -0.92 -55.04 12.14 21.45 0.26 -54.78 16 16 Si 0.93 47.73 29.55 68.60 2.03 49.75 16 17 H -0.28 -14.39 7.11 99.48 0.71 -13.68 16 18 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 19 H -0.28 -14.40 7.11 99.48 0.71 -13.70 16 20 C 0.09 4.03 5.95 86.30 0.51 4.55 16 21 N -0.84 -33.74 9.22 -186.73 -1.72 -35.46 16 22 C 0.13 5.28 5.33 86.23 0.46 5.74 16 23 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.12 1.13 6.19 -2.39 -0.01 1.11 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.12 1.30 5.51 -2.39 -0.01 1.29 16 28 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.77 6.38 -2.39 -0.02 1.76 16 32 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 33 H 0.04 2.27 6.88 -2.39 -0.02 2.25 16 34 H 0.01 0.37 6.44 -2.39 -0.02 0.36 16 35 H 0.33 11.30 9.08 -89.70 -0.81 10.49 16 36 H 0.33 12.17 6.93 -89.69 -0.62 11.55 16 37 H 0.05 2.64 5.80 -2.39 -0.01 2.63 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -74.97 293.17 1.51 -73.47 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.37 Total: 19.64 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 3.80 Total: -4.34 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -3.90 Total: -111.17 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -74.97 1.51 -73.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.096 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds